Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 14:37:33 (17116): Detected: vboxwrapper 26206
2025-05-24 14:37:33 (17116): Detected: BOINC client v8.2.1
2025-05-24 14:37:33 (17116): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-24 14:37:33 (17116): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 14:37:34 (17116): Create VM. (boinc_4555958a39d6464f, slot#3)
2025-05-24 14:37:35 (17116): Setting Memory Size for VM. (4096MB)
2025-05-24 14:37:35 (17116): Setting CPU Count for VM. (1)
2025-05-24 14:37:35 (17116): Setting Chipset Options for VM.
2025-05-24 14:37:35 (17116): Setting Graphics Controller Options for VM.
2025-05-24 14:37:36 (17116): Setting Boot Options for VM.
2025-05-24 14:37:36 (17116): Setting Network Configuration for NAT.
2025-05-24 14:37:36 (17116): Enabling VM Network Access.
2025-05-24 14:37:36 (17116): Disabling USB Support for VM.
2025-05-24 14:37:37 (17116): Disabling COM Port Support for VM.
2025-05-24 14:37:37 (17116): Disabling LPT Port Support for VM.
2025-05-24 14:37:37 (17116): Disabling Audio Support for VM.
2025-05-24 14:37:37 (17116): Disabling Clipboard Support for VM.
2025-05-24 14:37:38 (17116): Disabling Drag and Drop Support for VM.
2025-05-24 14:37:38 (17116): Adding storage controller(s) to VM.
2025-05-24 14:37:38 (17116): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 14:37:39 (17116): Adding VirtualBox Guest Additions to VM.
2025-05-24 14:37:39 (17116): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 14:37:39 (17116): forwarding host port 62047 to guest port 80
2025-05-24 14:37:40 (17116): Enabling remote desktop for VM.
2025-05-24 14:37:40 (17116): Required extension pack not installed, remote desktop not enabled.
2025-05-24 14:37:40 (17116): Enabling shared directory for VM.
2025-05-24 14:37:40 (17116): Starting VM using VBoxManage interface. (boinc_4555958a39d6464f, slot#3)
2025-05-24 14:37:48 (17116): Successfully started VM. (PID = '8060')
2025-05-24 14:37:48 (17116): Reporting VM Process ID to BOINC.
2025-05-24 14:37:48 (17116): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-24 14:37:48 (17116): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 14:37:48 (17116): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 14:37:48 (17116): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 14:37:48 (17116): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 14:37:48 (17116): Detected: Web Application Enabled (http://localhost:62047)
2025-05-24 14:37:48 (17116): Preference change detected
2025-05-24 14:37:48 (17116): Setting CPU throttle for VM. (100%)
2025-05-24 14:37:49 (17116): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 14:37:50 (17116): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 14:37:50 (17116): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 14:37:54 (17116): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 14:37:54 (17116): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 14:37:54 (17116): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 14:38:01 (17116): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 14:38:01 (17116): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 14:38:20 (17116): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000300 main     Log opened 2025-05-24T14:38:18.977661000Z
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000489 main     OS Product: Linux
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000563 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000610 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000674 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000675 main     Process ID: 1255
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.000676 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 14:38:20 (17116): Guest Log: 00:00:00.003257 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 14:38:20 (17116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 14:38:20 (17116): Guest Log: [INFO] Mounting shared directory
2025-05-24 14:38:21 (17116): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 14:38:25 (17116): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 14:38:25 (17116): Guest Log: [INFO] Detected branch: prod
2025-05-24 14:38:25 (17116): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 14:38:25 (17116): Guest Log: Copying input files
2025-05-24 14:38:27 (17116): Guest Log: Copied input files into RunAtlas.
2025-05-24 14:38:27 (17116): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-05-24 14:38:30 (17116): Guest Log: 00:00:10.036458 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 540 260 000ns (GuestNow=1 748 090 310 472 245 000 ns GuestLast=1 748 097 499 012 505 000 ns fSetTimeLastLoop=true )
2025-05-24 14:38:37 (17116): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 14:38:37 (17116): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 14:38:37 (17116): Guest Log: 2.6.3.0 1524 0 29532 146367 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-05-24 14:38:38 (17116): Guest Log: copied the webapp to /var/www
2025-05-24 14:38:38 (17116): Guest Log: core_number=1
2025-05-24 14:38:38 (17116): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 14:38:39 (17116): Guest Log:  *** Starting ATLAS job. (PandaID=6665289959 taskID=44871837) ***
2025-05-24 16:17:55 (17116): Status Report: Elapsed Time: '6000.000000'
2025-05-24 16:17:55 (17116): Status Report: CPU Time: '5955.156250'
2025-05-24 17:58:02 (17116): Status Report: Elapsed Time: '12000.000000'
2025-05-24 17:58:02 (17116): Status Report: CPU Time: '11936.031250'
2025-05-24 19:38:09 (17116): Status Report: Elapsed Time: '18000.000000'
2025-05-24 19:38:09 (17116): Status Report: CPU Time: '17915.750000'
2025-05-24 21:18:16 (17116): Status Report: Elapsed Time: '24000.000000'
2025-05-24 21:18:16 (17116): Status Report: CPU Time: '23895.718750'
2025-05-24 22:58:22 (17116): Status Report: Elapsed Time: '30000.000000'
2025-05-24 22:58:22 (17116): Status Report: CPU Time: '29875.984375'
2025-05-25 00:38:27 (17116): Status Report: Elapsed Time: '36000.000000'
2025-05-25 00:38:27 (17116): Status Report: CPU Time: '35859.250000'
2025-05-25 02:18:32 (17116): Status Report: Elapsed Time: '42000.000000'
2025-05-25 02:18:32 (17116): Status Report: CPU Time: '41839.359375'
2025-05-25 03:58:38 (17116): Status Report: Elapsed Time: '48000.000000'
2025-05-25 03:58:38 (17116): Status Report: CPU Time: '47817.437500'
2025-05-25 05:38:43 (17116): Status Report: Elapsed Time: '54000.000000'
2025-05-25 05:38:43 (17116): Status Report: CPU Time: '53800.875000'
2025-05-25 07:18:49 (17116): Status Report: Elapsed Time: '60000.000000'
2025-05-25 07:18:49 (17116): Status Report: CPU Time: '59781.312500'
2025-05-25 08:58:54 (17116): Status Report: Elapsed Time: '66000.000000'
2025-05-25 08:58:54 (17116): Status Report: CPU Time: '65756.109375'
2025-05-25 10:29:40 (17116): Guest Log:  *** Job finished ***
2025-05-25 10:29:40 (17116): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:25,917 | INFO     | [data] queue_monitor thread has finished
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:32,007 | INFO     | job.realtimelogging is not enabled
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:33,009 | INFO     | [payload] run_realtimelog thread has finished
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:34,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055441377088)>', '<ExcThread(monitor, started 140054781486848)>']
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:35,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:35,119 | INFO     | [monitor] control thread has ended
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,600 | INFO     | all workflow threads have been joined
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,600 | INFO     | end of generic workflow (traces error code: 0)
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,600 | INFO     | traces error code: 0
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,755 [wrapper] ==== pilot stdout END ====
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,760 [wrapper] ==== wrapper stdout RESUME ====
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,764 [wrapper] pilotpid: 5780
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,769 [wrapper] Pilot exit status: 0
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,801 [wrapper] pandaids: 6665289959
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,824 [wrapper] cleanup supervisor_pilot  7118 5781
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,828 [wrapper] Test setup, not cleaning
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,833 [wrapper] apfmon messages muted
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,837 [wrapper] ==== wrapper stdout END ====
2025-05-25 10:29:40 (17116): Guest Log: 2025-05-25 08:29:39,840 [wrapper] ==== wrapper stderr END ====
2025-05-25 10:29:40 (17116): Guest Log:  *** Error codes and diagnostics ***
2025-05-25 10:29:40 (17116): Guest Log:     "exeErrorCode": 0,
2025-05-25 10:29:40 (17116): Guest Log:     "exeErrorDiag": "",
2025-05-25 10:29:40 (17116): Guest Log:     "pilotErrorCode": 0,
2025-05-25 10:29:40 (17116): Guest Log:     "pilotErrorDiag": "",
2025-05-25 10:29:40 (17116): Guest Log:  *** Listing of results directory ***
2025-05-25 10:29:40 (17116): Guest Log: total 213300
2025-05-25 10:29:40 (17116): Guest Log: -rw-r--r--. 1 atlas atlas    503527 Apr  3 07:42 pilot3.tar.gz
2025-05-25 10:29:40 (17116): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 08:54 queuedata.json
2025-05-25 10:29:40 (17116): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 08:54 runpilot2-wrapper.sh
2025-05-25 10:29:40 (17116): Guest Log: -rwxr-xr-x. 1 atlas atlas      9394 May 24 12:38 init_data.xml
2025-05-25 10:29:40 (17116): Guest Log: -rwxr-xr-x. 1 atlas atlas    517091 May 24 12:38 input.tar.gz
2025-05-25 10:29:40 (17116): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 12:38 start_atlas.sh
2025-05-25 10:29:40 (17116): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 12:38 EVNT.44871834._000524.pool.root.1 -> /data/./ATLAS.root_0
2025-05-25 10:29:40 (17116): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 24 12:38 pandaJob.out
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas    988556 May 24 12:39 agis_schedconf.cvmfs.json
2025-05-25 10:29:40 (17116): Guest Log: drwx------. 4 atlas atlas      4096 May 24 12:39 pilot3
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas 200914684 May 25 08:28 HITS.44871837._013082.pool.root.1
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas        95 May 25 08:28 pilot_heartbeat.json
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas      1033 May 25 08:29 memory_monitor_summary.json
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas   1596740 May 25 08:29 agis_ddmendpoints.agis.ALL.json
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas    769027 May 25 08:29 log.44871837._013082.job.log.tgz.1
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas      7680 May 25 08:29 heartbeat.json
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas      4485 May 25 08:29 pilotlog.txt
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas   6098047 May 25 08:29 log.44871837._013082.job.log.1
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas       357 May 25 08:29 output.list
2025-05-25 10:29:40 (17116): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 25 08:29 runtime_log
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas   6881280 May 25 08:29 result.tar.gz
2025-05-25 10:29:40 (17116): Guest Log: -rw-r--r--. 1 atlas atlas      8459 May 25 08:29 runtime_log.err
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas       656 May 25 08:29 0XVMDmCpzc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDmQKDmGreiPm.diag
2025-05-25 10:29:40 (17116): Guest Log: Looking for outputfile HITS.44871837._013082.pool.root.1
2025-05-25 10:29:40 (17116): Guest Log: HITS file was successfully produced
2025-05-25 10:29:40 (17116): Guest Log: -rw-------. 1 atlas atlas 200914684 May 25 08:28 /home/atlas/RunAtlas/HITS.44871837._013082.pool.root.1
2025-05-25 10:29:42 (17116): Guest Log: Successfully finished the ATLAS job!
2025-05-25 10:29:42 (17116): Guest Log: Copying the results back to the shared directory!
2025-05-25 10:29:42 (17116): Guest Log:  *** Contents of shared directory: ***
2025-05-25 10:29:42 (17116): Guest Log: total 422184
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root 223967259 May 24 12:37 ATLAS.root_0
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root 200914684 May 25 08:29 HITS.pool.root.1
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root      9394 May 24 12:37 init_data.xml
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root    517091 May 24 12:25 input.tar.gz
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root   6881280 May 25 08:29 result.tar.gz
2025-05-25 10:29:42 (17116): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 12:25 start_atlas.sh
2025-05-25 10:29:42 (17116): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-25 10:29:42 (17116): VM Completion File Detected.
2025-05-25 10:29:42 (17116): Powering off VM.
2025-05-25 10:29:43 (17116): Successfully stopped VM.
2025-05-25 10:29:43 (17116): Deregistering VM. (boinc_4555958a39d6464f, slot#3)
2025-05-25 10:29:43 (17116): Removing network bandwidth throttle group from VM.
2025-05-25 10:29:43 (17116): Removing VM from VirtualBox.
10:29:48 (17116): called boinc_finish(0)

</stderr_txt>
]]>

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