Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:37:52 (50680): wrapper (7.7.26015): starting
07:37:52 (50680): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 07:37:52] Arguments: --nthreads 8
[2025-05-24 07:37:52] Threads: 8
[2025-05-24 07:37:52] Checking for CVMFS
[2025-05-24 07:37:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 07:37:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 07:37:52] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 07:37:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 07:37:53] 2.11.2.0 7041 12892 159932 146366 3 195 13111892 18432001 20142 130560 0 40916434 99.249 60349502 40957 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 07:37:53] CVMFS is ok
[2025-05-24 07:37:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 07:37:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 07:37:53] Further information can be found at the LHC@home message board.
[2025-05-24 07:37:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 07:37:53] Checking for apptainer binary...
[2025-05-24 07:37:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 07:37:53] Running /usr/bin/apptainer --version
[2025-05-24 07:37:53] apptainer version 1.3.2-1.el7
[2025-05-24 07:37:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 07:37:55] c-211-33-2.aglt2.org
[2025-05-24 07:37:55] apptainer works
[2025-05-24 07:37:55] Set ATHENA_PROC_NUMBER=8
[2025-05-24 07:37:55] Set ATHENA_CORE_NUMBER=8
[2025-05-24 07:37:55] Starting ATLAS job with PandaID=6665286039
[2025-05-24 07:37:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:09:42 (300453): wrapper (7.7.26015): starting
13:09:42 (300453): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 13:09:42] Arguments: --nthreads 8
[2025-05-24 13:09:42] Threads: 8
[2025-05-24 13:09:42] This job has been restarted, cleaning up previous attempt
[2025-05-24 13:09:42] Checking for CVMFS
[2025-05-24 13:09:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 13:09:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 13:09:44] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 13:09:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 13:09:45] 2.11.2.0 7041 13224 163108 146373 1 594 13483011 18432001 18784 130560 0 42022011 99.268 60463198 39587 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 13:09:45] CVMFS is ok
[2025-05-24 13:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 13:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 13:09:45] Further information can be found at the LHC@home message board.
[2025-05-24 13:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 13:09:45] Checking for apptainer binary...
[2025-05-24 13:09:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 13:09:45] Running /usr/bin/apptainer --version
[2025-05-24 13:09:45] apptainer version 1.3.2-1.el7
[2025-05-24 13:09:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 13:09:50] c-211-33-2.aglt2.org
[2025-05-24 13:09:50] apptainer works
[2025-05-24 13:09:50] Set ATHENA_PROC_NUMBER=8
[2025-05-24 13:09:50] Set ATHENA_CORE_NUMBER=8
[2025-05-24 13:09:50] Starting ATLAS job with PandaID=6665286039
[2025-05-24 13:09:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 19:09:54]  *** The last 200 lines of the pilot log: ***
[2025-05-24 19:09:54] 2025-05-24 23:09:32,867 | INFO     | extracted standard info from prmon json
[2025-05-24 19:09:54] 2025-05-24 23:09:32,867 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 19:09:54] 2025-05-24 23:09:32,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 19:09:54] 2025-05-24 23:09:32,867 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 19:09:54] 2025-05-24 23:09:32,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 19:09:54] 2025-05-24 23:09:32,887 | INFO     | fitting pss+swap vs Time
[2025-05-24 19:09:54] 2025-05-24 23:09:32,904 | INFO     | sum of square deviations: 13294574140.354422
[2025-05-24 19:09:54] 2025-05-24 23:09:32,924 | INFO     | sum of deviations: 77252707951.00572
[2025-05-24 19:09:54] 2025-05-24 23:09:32,925 | INFO     | mean x: 1748117436.7885714
[2025-05-24 19:09:54] 2025-05-24 23:09:32,925 | INFO     | mean y: 2441733.3514285716
[2025-05-24 19:09:54] 2025-05-24 23:09:32,925 | INFO     | -- intersect: -10155597507.511986
[2025-05-24 19:09:54] 2025-05-24 23:09:32,925 | INFO     | intersect: -10155597507.511986
[2025-05-24 19:09:54] 2025-05-24 23:09:32,925 | INFO     | chi2: 4.621249148185898
[2025-05-24 19:09:54] 2025-05-24 23:09:32,926 | INFO     | sum of square deviations: 12732929297.431885
[2025-05-24 19:09:54] 2025-05-24 23:09:32,949 | INFO     | sum of deviations: 122543942602.16525
[2025-05-24 19:09:54] 2025-05-24 23:09:32,949 | INFO     | mean x: 1748117284.2927537
[2025-05-24 19:09:54] 2025-05-24 23:09:32,949 | INFO     | mean y: 2453921.2260869564
[2025-05-24 19:09:54] 2025-05-24 23:09:32,950 | INFO     | -- intersect: -16821733125.145924
[2025-05-24 19:09:54] 2025-05-24 23:09:32,950 | INFO     | intersect: -16821733125.145924
[2025-05-24 19:09:54] 2025-05-24 23:09:32,950 | INFO     | chi2: 3.039755286378944
[2025-05-24 19:09:54] 2025-05-24 23:09:32,950 | INFO     | current chi2=3.039755286378944 (change=34.22221592245854 %)
[2025-05-24 19:09:54] 2025-05-24 23:09:32,951 | INFO     | sum of square deviations: 12187331266.997047
[2025-05-24 19:09:54] 2025-05-24 23:09:32,971 | INFO     | sum of deviations: 120547605297.79996
[2025-05-24 19:09:54] 2025-05-24 23:09:32,971 | INFO     | mean x: 1748117131.7970588
[2025-05-24 19:09:54] 2025-05-24 23:09:32,971 | INFO     | mean y: 2453363.2
[2025-05-24 19:09:54] 2025-05-24 23:09:32,971 | INFO     | -- intersect: -17288562151.316174
[2025-05-24 19:09:54] 2025-05-24 23:09:32,971 | INFO     | intersect: -17288562151.316174
[2025-05-24 19:09:54] 2025-05-24 23:09:32,984 | INFO     | chi2: 3.0405997727864236
[2025-05-24 19:09:54] 2025-05-24 23:09:32,984 | INFO     | current chi2=3.0405997727864236 (change=-0.027781394484733407 %)
[2025-05-24 19:09:54] 2025-05-24 23:09:32,984 | INFO     | right removable region: 339
[2025-05-24 19:09:54] 2025-05-24 23:09:32,984 | INFO     | sum of square deviations: 12732867687.431885
[2025-05-24 19:09:54] 2025-05-24 23:09:32,987 | INFO     | sum of deviations: -16667398989.507248
[2025-05-24 19:09:54] 2025-05-24 23:09:33,005 | INFO     | mean x: 1748117589.2927537
[2025-05-24 19:09:54] 2025-05-24 23:09:33,005 | INFO     | mean y: 2467167.797101449
[2025-05-24 19:09:54] 2025-05-24 23:09:33,005 | INFO     | -- intersect: 2290763414.6887155
[2025-05-24 19:09:54] 2025-05-24 23:09:33,005 | INFO     | intersect: 2290763414.6887155
[2025-05-24 19:09:54] 2025-05-24 23:09:33,006 | INFO     | chi2: 1.6957027861858958
[2025-05-24 19:09:54] 2025-05-24 23:09:33,006 | INFO     | current chi2=1.6957027861858958 (change=63.30639764680173 %)
[2025-05-24 19:09:54] 2025-05-24 23:09:33,006 | INFO     | sum of square deviations: 12187208046.997055
[2025-05-24 19:09:54] 2025-05-24 23:09:33,021 | INFO     | sum of deviations: -27617794555.42353
[2025-05-24 19:09:54] 2025-05-24 23:09:33,021 | INFO     | mean x: 1748117741.7970588
[2025-05-24 19:09:54] 2025-05-24 23:09:33,021 | INFO     | mean y: 2470207.776470588
[2025-05-24 19:09:54] 2025-05-24 23:09:33,021 | INFO     | -- intersect: 3963931804.679146
[2025-05-24 19:09:54] 2025-05-24 23:09:33,021 | INFO     | intersect: 3963931804.679146
[2025-05-24 19:09:54] 2025-05-24 23:09:33,022 | INFO     | chi2: 1.6332136704424665
[2025-05-24 19:09:54] 2025-05-24 23:09:33,022 | INFO     | current chi2=1.6332136704424665 (change=3.6851455486479794 %)
[2025-05-24 19:09:54] 2025-05-24 23:09:33,022 | INFO     | left removable region: 20
[2025-05-24 19:09:54] 2025-05-24 23:09:33,036 | INFO     | sum of square deviations: 10065556915.504671
[2025-05-24 19:09:54] 2025-05-24 23:09:33,039 | INFO     | sum of deviations: 12460830824.432608
[2025-05-24 19:09:54] 2025-05-24 23:09:33,039 | INFO     | mean x: 1748117711.3040752
[2025-05-24 19:09:54] 2025-05-24 23:09:33,040 | INFO     | mean y: 2484543.97492163
[2025-05-24 19:09:54] 2025-05-24 23:09:33,040 | INFO     | -- intersect: -2161628107.1790895
[2025-05-24 19:09:54] 2025-05-24 23:09:33,040 | INFO     | intersect: -2161628107.1790895
[2025-05-24 19:09:54] 2025-05-24 23:09:33,040 | INFO     | chi2: 0.0012918609934705135
[2025-05-24 19:09:54] 2025-05-24 23:09:33,040 | INFO     | -- intersect: -2161628107.1790895
[2025-05-24 19:09:54] 2025-05-24 23:09:33,062 | INFO     | current memory leak: 1.24 B/s (using 319 data points, chi2=0.00)
[2025-05-24 19:09:54] 2025-05-24 23:09:33,063 | INFO     | ..............................
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . Timing measurements:
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . get job = 0 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . initial setup = 6 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . payload setup = 46 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . stage-in = 0 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . payload execution = 21356 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . stage-out = 7 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | . log creation = 1 s
[2025-05-24 19:09:54] 2025-05-24 23:09:33,064 | INFO     | ..............................
[2025-05-24 19:09:54] 2025-05-24 23:09:34,006 | INFO     | 
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | job summary report
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | --------------------------------------------------
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | PanDA job id: 6665286039
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | task id: 44871837
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | errors: (none)
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | pilot state: finished 
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | transexitcode: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | exeerrorcode: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:34,007 | INFO     | exeerrordiag: 
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | exitcode: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | exitmsg: OK
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | cpuconsumptiontime: 57608 s
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | nevents: 400
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | neventsw: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | pid: 43572
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | pgrp: 43572
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | corecount: 8
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | event service: False
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | sizes: {0: 2393568, 1: 2393767, 12: 2393767, 23: 2393795, 27: 2394029, 34: 2394057, 21407: 2427675, 21416: 2436616, 21418: 2436672, 21471: 2436842}
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | --------------------------------------------------
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | 
[2025-05-24 19:09:54] 2025-05-24 23:09:34,008 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-24 19:09:54] 2025-05-24 23:09:34,190 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,190 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,190 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,190 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | job 6665286039 has completed (purged errors)
[2025-05-24 19:09:54] 2025-05-24 23:09:34,192 | INFO     | overall cleanup function is called
[2025-05-24 19:09:54] 2025-05-24 23:09:35,201 | INFO     | --- collectZombieJob: --- 10, [43572]
[2025-05-24 19:09:54] 2025-05-24 23:09:35,202 | INFO     | zombie collector waiting for pid 43572
[2025-05-24 19:09:54] 2025-05-24 23:09:35,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 19:09:54] 2025-05-24 23:09:35,202 | INFO     | collected zombie processes
[2025-05-24 19:09:54] 2025-05-24 23:09:35,202 | INFO     | will attempt to kill all subprocesses of pid=43572
[2025-05-24 19:09:54] 2025-05-24 23:09:36,927 | INFO     | process IDs to be killed: [43572] (in reverse order)
[2025-05-24 19:09:54] 2025-05-24 23:09:37,564 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 19:09:54] 2025-05-24 23:09:37,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 19:09:54] 2025-05-24 23:09:37,574 | INFO     | did not find any defunct processes belonging to 43572
[2025-05-24 19:09:54] 2025-05-24 23:09:37,583 | INFO     | did not find any defunct processes belonging to 43572
[2025-05-24 19:09:54] 2025-05-24 23:09:37,584 | INFO     | ready for new job
[2025-05-24 19:09:54] 2025-05-24 23:09:37,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 19:09:54] 2025-05-24 23:09:37,586 | INFO     | **************************************
[2025-05-24 19:09:54] 2025-05-24 23:09:37,586 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 19:09:54] 2025-05-24 23:09:37,586 | INFO     | **************************************
[2025-05-24 19:09:54] 2025-05-24 23:09:37,586 | INFO     | 
[2025-05-24 19:09:54] 2025-05-24 23:09:37,590 | INFO     | architecture information:
[2025-05-24 19:09:54] 2025-05-24 23:09:37,591 | INFO     | executing command: cat /etc/os-release
[2025-05-24 19:09:54] 2025-05-24 23:09:37,748 | INFO     | cat /etc/os-release:
[2025-05-24 19:09:54] NAME="CentOS Linux"
[2025-05-24 19:09:54] VERSION="7 (Core)"
[2025-05-24 19:09:54] ID="centos"
[2025-05-24 19:09:54] ID_LIKE="rhel fedora"
[2025-05-24 19:09:54] VERSION_ID="7"
[2025-05-24 19:09:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 19:09:54] ANSI_COLOR="0;31"
[2025-05-24 19:09:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 19:09:54] HOME_URL="https://www.centos.org/"
[2025-05-24 19:09:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 19:09:54] 
[2025-05-24 19:09:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 19:09:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 19:09:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 19:09:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 19:09:54] 
[2025-05-24 19:09:54] 2025-05-24 23:09:37,748 | INFO     | **************************************
[2025-05-24 19:09:54] 2025-05-24 23:09:38,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-24 19:09:54] 2025-05-24 23:09:38,482 | INFO     | sufficient remaining disk space (103056146432 B)
[2025-05-24 19:09:54] 2025-05-24 23:09:38,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 19:09:54] 2025-05-24 23:09:38,483 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 19:09:54] 2025-05-24 23:09:38,483 | INFO     | update_server=False
[2025-05-24 19:09:54] 2025-05-24 23:09:38,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 19:09:54] 2025-05-24 23:09:38,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 19:09:54] 2025-05-24 23:09:38,597 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-24 19:09:54] 2025-05-24 23:09:38,598 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-24 19:09:54] 2025-05-24 23:09:38,598 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 19:09:54] 2025-05-24 23:09:38,598 | INFO     | will abort loop
[2025-05-24 19:09:54] 2025-05-24 23:09:38,975 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 19:09:54] 2025-05-24 23:09:38,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 19:09:54] 2025-05-24 23:09:38,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 19:09:54] 2025-05-24 23:09:39,102 | INFO     | all data control threads have been joined
[2025-05-24 19:09:54] 2025-05-24 23:09:39,144 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 19:09:54] 2025-05-24 23:09:39,355 | INFO     | all payload control threads have been joined
[2025-05-24 19:09:54] 2025-05-24 23:09:39,470 | INFO     | all job control threads have been joined
[2025-05-24 19:09:54] 2025-05-24 23:09:39,489 | INFO     | [job] retrieve thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:39,548 | INFO     | [job] queue monitor thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:39,604 | INFO     | [job] job monitor thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:39,812 | INFO     | [payload] failed_post thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,109 | INFO     | [data] control thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,362 | INFO     | [payload] control thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,476 | INFO     | [job] control thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,497 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,549 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,596 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,600 | INFO     | [data] copytool_in thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,604 | INFO     | [job] validate thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,734 | INFO     | [payload] validate_post thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:40,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 19:09:54] 2025-05-24 23:09:41,160 | INFO     | [data] copytool_out thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:44,988 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 19:09:54] 2025-05-24 23:09:46,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423720081216)>', '<ExcThread(monitor, started 140423150434048)>']
[2025-05-24 19:09:54] 2025-05-24 23:09:47,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 19:09:54] 2025-05-24 23:09:47,023 | INFO     | [monitor] control thread has ended
[2025-05-24 19:09:54] 2025-05-24 23:09:51,277 | INFO     | all workflow threads have been joined
[2025-05-24 19:09:54] 2025-05-24 23:09:51,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 19:09:54] 2025-05-24 23:09:51,277 | INFO     | traces error code: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:51,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 19:09:54] 2025-05-24 23:09:51,641 [wrapper] ==== pilot stdout END ====
[2025-05-24 19:09:54] 2025-05-24 23:09:51,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 19:09:54] 2025-05-24 23:09:51,685 [wrapper] pilotpid: 325093
[2025-05-24 19:09:54] 2025-05-24 23:09:51,728 [wrapper] Pilot exit status: 0
[2025-05-24 19:09:54] 2025-05-24 23:09:51,893 [wrapper] pandaids: 6665286039 6665286039
[2025-05-24 19:09:54] 2025-05-24 23:09:52,417 [wrapper] cleanup supervisor_pilot  79762 325094
[2025-05-24 19:09:54] 2025-05-24 23:09:52,455 [wrapper] Test setup, not cleaning
[2025-05-24 19:09:54] 2025-05-24 23:09:52,499 [wrapper] apfmon messages muted
[2025-05-24 19:09:54] 2025-05-24 23:09:52,538 [wrapper] ==== wrapper stdout END ====
[2025-05-24 19:09:54] 2025-05-24 23:09:52,584 [wrapper] ==== wrapper stderr END ====
[2025-05-24 19:09:54]  *** Error codes and diagnostics ***
[2025-05-24 19:09:54]     "exeErrorCode": 0,
[2025-05-24 19:09:54]     "exeErrorDiag": "",
[2025-05-24 19:09:54]     "pilotErrorCode": 0,
[2025-05-24 19:09:54]     "pilotErrorDiag": "",
[2025-05-24 19:09:54]  *** Listing of results directory ***
[2025-05-24 19:09:54] total 642424
[2025-05-24 19:09:54] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas    495897 May 24 04:12 pilot3.tar.gz
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas      5111 May 24 04:14 queuedata.json
[2025-05-24 19:09:54] -rwx------ 1 boincer umatlas     37140 May 24 04:15 runpilot2-wrapper.sh
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas       100 May 24 07:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 19:09:54] -rwxr-xr-x 1 boincer umatlas      7986 May 24 07:37 run_atlas
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas       105 May 24 07:37 job.xml
[2025-05-24 19:09:54] -rw-r--r-- 3 boincer umatlas 225195758 May 24 07:37 EVNT.44871834._000473.pool.root.1
[2025-05-24 19:09:54] -rw-r--r-- 3 boincer umatlas 225195758 May 24 07:37 ATLAS.root_0
[2025-05-24 19:09:54] -rw-r--r-- 2 boincer umatlas     15093 May 24 07:37 start_atlas.sh
[2025-05-24 19:09:54] drwxrwx--x 2 boincer umatlas      4096 May 24 07:37 shared
[2025-05-24 19:09:54] -rw-r--r-- 2 boincer umatlas    508880 May 24 07:37 input.tar.gz
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas         0 May 24 07:37 boinc_lockfile
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas      2558 May 24 13:09 pandaJob.out
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas    988572 May 24 13:10 agis_schedconf.cvmfs.json
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas      6301 May 24 19:04 init_data.xml
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas 199125745 May 24 19:06 HITS.44871837._011809.pool.root.1
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas       532 May 24 19:06 boinc_task_state.xml
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas      1065 May 24 19:08 memory_monitor_summary.json
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas   1596740 May 24 19:08 agis_ddmendpoints.agis.ALL.json
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas    451953 May 24 19:08 log.44871837._011809.job.log.tgz.1
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas        96 May 24 19:08 pilot_heartbeat.json
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas      7767 May 24 19:09 heartbeat.json
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas      8192 May 24 19:09 boinc_mmap_file
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas      4540 May 24 19:09 pilotlog.txt
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas        29 May 24 19:09 wrapper_checkpoint.txt
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas   1795626 May 24 19:09 log.44871837._011809.job.log.1
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas       357 May 24 19:09 output.list
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas       620 May 24 19:09 runtime_log
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas   2263040 May 24 19:09 result.tar.gz
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas      8755 May 24 19:09 runtime_log.err
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas       789 May 24 19:09 GNjKDmQDzc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfYQKDmd1xEXm.diag
[2025-05-24 19:09:54] -rw-r--r-- 1 boincer umatlas     23047 May 24 19:09 stderr.txt
[2025-05-24 19:09:54] HITS file was successfully produced:
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas 199125745 May 24 19:06 shared/HITS.pool.root.1
[2025-05-24 19:09:54]  *** Contents of shared directory: ***
[2025-05-24 19:09:54] total 417112
[2025-05-24 19:09:54] -rw-r--r-- 3 boincer umatlas 225195758 May 24 07:37 ATLAS.root_0
[2025-05-24 19:09:54] -rw-r--r-- 2 boincer umatlas     15093 May 24 07:37 start_atlas.sh
[2025-05-24 19:09:54] -rw-r--r-- 2 boincer umatlas    508880 May 24 07:37 input.tar.gz
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas 199125745 May 24 19:06 HITS.pool.root.1
[2025-05-24 19:09:54] -rw------- 1 boincer umatlas   2263040 May 24 19:09 result.tar.gz
19:09:56 (300453): run_atlas exited; CPU time 58291.399621
19:09:56 (300453): called boinc_finish(0)

</stderr_txt>
]]>

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