Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:31:54 (325268): wrapper (7.7.26015): starting
07:31:54 (325268): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 07:31:54] Arguments: --nthreads 8
[2025-05-24 07:31:54] Threads: 8
[2025-05-24 07:31:54] Checking for CVMFS
[2025-05-24 07:31:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 07:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 07:31:55] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 07:31:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 07:31:57] 2.11.2.0 7041 12886 147036 146366 1 63 13110926 18432000 22757 130560 0 40779258 99.247 60349433 40974 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 07:31:57] CVMFS is ok
[2025-05-24 07:31:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 07:31:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 07:31:57] Further information can be found at the LHC@home message board.
[2025-05-24 07:31:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 07:31:57] Checking for apptainer binary...
[2025-05-24 07:31:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 07:31:57] Running /usr/bin/apptainer --version
[2025-05-24 07:31:58] apptainer version 1.3.2-1.el7
[2025-05-24 07:31:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 07:32:19] c-211-33-2.aglt2.org
[2025-05-24 07:32:19] apptainer works
[2025-05-24 07:32:19] Set ATHENA_PROC_NUMBER=8
[2025-05-24 07:32:19] Set ATHENA_CORE_NUMBER=8
[2025-05-24 07:32:19] Starting ATLAS job with PandaID=6665286102
[2025-05-24 07:32:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:00:08 (325268): BOINC client no longer exists - exiting
13:00:08 (325268): timer handler: client dead, exiting
13:09:42 (300450): wrapper (7.7.26015): starting
13:09:42 (300450): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 13:09:42] Arguments: --nthreads 8
[2025-05-24 13:09:42] Threads: 8
[2025-05-24 13:09:42] This job has been restarted, cleaning up previous attempt
[2025-05-24 13:09:42] Checking for CVMFS
[2025-05-24 13:09:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 13:09:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 13:09:44] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 13:09:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 13:09:45] 2.11.2.0 7041 13224 163108 146373 1 594 13483011 18432001 18784 130560 0 42022011 99.268 60463198 39587 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 13:09:45] CVMFS is ok
[2025-05-24 13:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 13:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 13:09:45] Further information can be found at the LHC@home message board.
[2025-05-24 13:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 13:09:45] Checking for apptainer binary...
[2025-05-24 13:09:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 13:09:45] Running /usr/bin/apptainer --version
[2025-05-24 13:09:45] apptainer version 1.3.2-1.el7
[2025-05-24 13:09:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 13:09:50] c-211-33-2.aglt2.org
[2025-05-24 13:09:50] apptainer works
[2025-05-24 13:09:50] Set ATHENA_PROC_NUMBER=8
[2025-05-24 13:09:50] Set ATHENA_CORE_NUMBER=8
[2025-05-24 13:09:50] Starting ATLAS job with PandaID=6665286102
[2025-05-24 13:09:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 19:08:54]  *** The last 200 lines of the pilot log: ***
[2025-05-24 19:08:54] 2025-05-24 23:08:35,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 19:08:54] 2025-05-24 23:08:35,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 19:08:54] 2025-05-24 23:08:35,560 | INFO     | fitting pss+swap vs Time
[2025-05-24 19:08:54] 2025-05-24 23:08:35,563 | INFO     | sum of square deviations: 13181146278.882524
[2025-05-24 19:08:54] 2025-05-24 23:08:35,566 | INFO     | sum of deviations: 73187017633.58167
[2025-05-24 19:08:54] 2025-05-24 23:08:35,566 | INFO     | mean x: 1748117406.2148998
[2025-05-24 19:08:54] 2025-05-24 23:08:35,566 | INFO     | mean y: 2439282.6189111746
[2025-05-24 19:08:54] 2025-05-24 23:08:35,566 | INFO     | -- intersect: -9703810593.32643
[2025-05-24 19:08:54] 2025-05-24 23:08:35,566 | INFO     | intersect: -9703810593.32643
[2025-05-24 19:08:54] 2025-05-24 23:08:35,572 | INFO     | chi2: 5.042411793705136
[2025-05-24 19:08:54] 2025-05-24 23:08:35,573 | INFO     | sum of square deviations: 12622700306.08143
[2025-05-24 19:08:54] 2025-05-24 23:08:35,575 | INFO     | sum of deviations: 130117583559.23846
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | mean x: 1748117253.7151163
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | mean y: 2454718.6656976743
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | -- intersect: -18017524154.003555
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | intersect: -18017524154.003555
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | chi2: 3.254706437810515
[2025-05-24 19:08:54] 2025-05-24 23:08:35,580 | INFO     | current chi2=3.254706437810515 (change=35.45337883999008 %)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,581 | INFO     | sum of square deviations: 12080254511.28013
[2025-05-24 19:08:54] 2025-05-24 23:08:35,587 | INFO     | sum of deviations: 128043667202.79349
[2025-05-24 19:08:54] 2025-05-24 23:08:35,587 | INFO     | mean x: 1748117101.2153392
[2025-05-24 19:08:54] 2025-05-24 23:08:35,587 | INFO     | mean y: 2454135.5781710916
[2025-05-24 19:08:54] 2025-05-24 23:08:35,587 | INFO     | -- intersect: -18526569746.3706
[2025-05-24 19:08:54] 2025-05-24 23:08:35,588 | INFO     | intersect: -18526569746.3706
[2025-05-24 19:08:54] 2025-05-24 23:08:35,588 | INFO     | chi2: 3.255612452020878
[2025-05-24 19:08:54] 2025-05-24 23:08:35,588 | INFO     | current chi2=3.255612452020878 (change=-0.027837048522638057 %)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,588 | INFO     | right removable region: 338
[2025-05-24 19:08:54] 2025-05-24 23:08:35,589 | INFO     | sum of square deviations: 12622675723.648249
[2025-05-24 19:08:54] 2025-05-24 23:08:35,596 | INFO     | sum of deviations: -22745305927.343033
[2025-05-24 19:08:54] 2025-05-24 23:08:35,596 | INFO     | mean x: 1748117558.7180233
[2025-05-24 19:08:54] 2025-05-24 23:08:35,613 | INFO     | mean y: 2465413.3779069767
[2025-05-24 19:08:54] 2025-05-24 23:08:35,614 | INFO     | -- intersect: 3152468593.4096518
[2025-05-24 19:08:54] 2025-05-24 23:08:35,614 | INFO     | intersect: 3152468593.4096518
[2025-05-24 19:08:54] 2025-05-24 23:08:35,614 | INFO     | chi2: 1.9628597225772442
[2025-05-24 19:08:54] 2025-05-24 23:08:35,614 | INFO     | current chi2=1.9628597225772442 (change=61.07299834123731 %)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,615 | INFO     | sum of square deviations: 12080205468.407085
[2025-05-24 19:08:54] 2025-05-24 23:08:35,621 | INFO     | sum of deviations: -41766497179.64602
[2025-05-24 19:08:54] 2025-05-24 23:08:35,622 | INFO     | mean x: 1748117711.2212389
[2025-05-24 19:08:54] 2025-05-24 23:08:35,622 | INFO     | mean y: 2470754.0619469024
[2025-05-24 19:08:54] 2025-05-24 23:08:35,622 | INFO     | -- intersect: 6046470059.070349
[2025-05-24 19:08:54] 2025-05-24 23:08:35,622 | INFO     | intersect: 6046470059.070349
[2025-05-24 19:08:54] 2025-05-24 23:08:35,622 | INFO     | chi2: 1.8482418889315282
[2025-05-24 19:08:54] 2025-05-24 23:08:35,623 | INFO     | current chi2=1.8482418889315282 (change=5.839328828614518 %)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,623 | INFO     | left removable region: 20
[2025-05-24 19:08:54] 2025-05-24 23:08:35,623 | INFO     | sum of square deviations: 9971365712.74213
[2025-05-24 19:08:54] 2025-05-24 23:08:35,631 | INFO     | sum of deviations: 8597938872.15095
[2025-05-24 19:08:54] 2025-05-24 23:08:35,631 | INFO     | mean x: 1748117680.7295597
[2025-05-24 19:08:54] 2025-05-24 23:08:35,631 | INFO     | mean y: 2488909.2924528304
[2025-05-24 19:08:54] 2025-05-24 23:08:35,631 | INFO     | -- intersect: -1504848138.9347885
[2025-05-24 19:08:54] 2025-05-24 23:08:35,631 | INFO     | intersect: -1504848138.9347885
[2025-05-24 19:08:54] 2025-05-24 23:08:35,632 | INFO     | chi2: 0.0017646615186263516
[2025-05-24 19:08:54] 2025-05-24 23:08:35,632 | INFO     | -- intersect: -1504848138.9347885
[2025-05-24 19:08:54] 2025-05-24 23:08:35,632 | INFO     | current memory leak: 0.86 B/s (using 318 data points, chi2=0.00)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,655 | INFO     | monitor loop #1374: job 0:6665286102 is in state 'finished'
[2025-05-24 19:08:54] 2025-05-24 23:08:35,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | ..............................
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . Timing measurements:
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . get job = 0 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . initial setup = 5 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . payload setup = 46 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . stage-in = 0 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . payload execution = 21294 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . stage-out = 6 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | . log creation = 0 s
[2025-05-24 19:08:54] 2025-05-24 23:08:35,673 | INFO     | ..............................
[2025-05-24 19:08:54] 2025-05-24 23:08:36,151 | INFO     | 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | job summary report
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | --------------------------------------------------
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | PanDA job id: 6665286102
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | task id: 44871837
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | errors: (none)
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | pilot state: finished 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | transexitcode: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | exeerrorcode: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | exeerrordiag: 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | exitcode: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | exitmsg: OK
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | cpuconsumptiontime: 56262 s
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | nevents: 400
[2025-05-24 19:08:54] 2025-05-24 23:08:36,152 | INFO     | neventsw: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | pid: 43160
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | pgrp: 43160
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | corecount: 8
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | event service: False
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | sizes: {0: 2392911, 1: 2393596, 2: 2393795, 3: 2393795, 14: 2393823, 25: 2393851, 26: 2394213, 35: 2394241, 21345: 2427776, 21346: 2427775, 21353: 2436772, 21356: 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | --------------------------------------------------
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | 
[2025-05-24 19:08:54] 2025-05-24 23:08:36,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-05-24 19:08:54] 2025-05-24 23:08:36,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | job 6665286102 has completed (purged errors)
[2025-05-24 19:08:54] 2025-05-24 23:08:36,370 | INFO     | overall cleanup function is called
[2025-05-24 19:08:54] 2025-05-24 23:08:36,967 | INFO     | PID=325136 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-24 19:08:54] 2025-05-24 23:08:36,967 | INFO     | .. there are 18 such processes running
[2025-05-24 19:08:54] 2025-05-24 23:08:37,400 | INFO     | --- collectZombieJob: --- 10, [43160]
[2025-05-24 19:08:54] 2025-05-24 23:08:37,401 | INFO     | zombie collector waiting for pid 43160
[2025-05-24 19:08:54] 2025-05-24 23:08:37,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 19:08:54] 2025-05-24 23:08:37,401 | INFO     | collected zombie processes
[2025-05-24 19:08:54] 2025-05-24 23:08:37,401 | INFO     | will attempt to kill all subprocesses of pid=43160
[2025-05-24 19:08:54] 2025-05-24 23:08:38,482 | INFO     | process IDs to be killed: [43160] (in reverse order)
[2025-05-24 19:08:54] 2025-05-24 23:08:38,842 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 19:08:54] 2025-05-24 23:08:38,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 19:08:54] 2025-05-24 23:08:38,853 | INFO     | did not find any defunct processes belonging to 43160
[2025-05-24 19:08:54] 2025-05-24 23:08:38,865 | INFO     | did not find any defunct processes belonging to 43160
[2025-05-24 19:08:54] 2025-05-24 23:08:38,865 | INFO     | ready for new job
[2025-05-24 19:08:54] 2025-05-24 23:08:38,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 19:08:54] 2025-05-24 23:08:38,868 | INFO     | **************************************
[2025-05-24 19:08:54] 2025-05-24 23:08:38,869 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 19:08:54] 2025-05-24 23:08:38,869 | INFO     | **************************************
[2025-05-24 19:08:54] 2025-05-24 23:08:38,869 | INFO     | 
[2025-05-24 19:08:54] 2025-05-24 23:08:38,873 | INFO     | architecture information:
[2025-05-24 19:08:54] 2025-05-24 23:08:38,874 | INFO     | executing command: cat /etc/os-release
[2025-05-24 19:08:54] 2025-05-24 23:08:38,908 | INFO     | cat /etc/os-release:
[2025-05-24 19:08:54] NAME="CentOS Linux"
[2025-05-24 19:08:54] VERSION="7 (Core)"
[2025-05-24 19:08:54] ID="centos"
[2025-05-24 19:08:54] ID_LIKE="rhel fedora"
[2025-05-24 19:08:54] VERSION_ID="7"
[2025-05-24 19:08:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 19:08:54] ANSI_COLOR="0;31"
[2025-05-24 19:08:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 19:08:54] HOME_URL="https://www.centos.org/"
[2025-05-24 19:08:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 19:08:54] 
[2025-05-24 19:08:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 19:08:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 19:08:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 19:08:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 19:08:54] 
[2025-05-24 19:08:54] 2025-05-24 23:08:38,909 | INFO     | **************************************
[2025-05-24 19:08:54] 2025-05-24 23:08:39,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | INFO     | sufficient remaining disk space (103272153088 B)
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | INFO     | update_server=False
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 19:08:54] 2025-05-24 23:08:39,563 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 19:08:54] 2025-05-24 23:08:39,564 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 19:08:54] 2025-05-24 23:08:39,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 19:08:54] 2025-05-24 23:08:39,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 19:08:54] 2025-05-24 23:08:39,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 19:08:54] 2025-05-24 23:08:39,564 | INFO     | aborting loop
[2025-05-24 19:08:54] 2025-05-24 23:08:39,778 | INFO     | all data control threads have been joined
[2025-05-24 19:08:54] 2025-05-24 23:08:39,886 | INFO     | all payload control threads have been joined
[2025-05-24 19:08:54] 2025-05-24 23:08:40,514 | INFO     | all job control threads have been joined
[2025-05-24 19:08:54] 2025-05-24 23:08:40,570 | INFO     | [job] retrieve thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:40,574 | INFO     | [job] job monitor thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:40,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 19:08:54] 2025-05-24 23:08:40,785 | INFO     | [data] control thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:40,812 | INFO     | [payload] failed_post thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:40,893 | INFO     | [payload] control thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,034 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,146 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 19:08:54] 2025-05-24 23:08:41,474 | INFO     | [payload] validate_post thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,521 | INFO     | [job] control thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,559 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,775 | INFO     | [data] copytool_in thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:41,776 | INFO     | [job] validate thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:42,193 | INFO     | [job] queue monitor thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:42,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 19:08:54] 2025-05-24 23:08:42,776 | INFO     | [data] copytool_out thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:46,484 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 19:08:54] 2025-05-24 23:08:47,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349010011968)>', '<ExcThread(monitor, started 140348567308032)>']
[2025-05-24 19:08:54] 2025-05-24 23:08:47,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 19:08:54] 2025-05-24 23:08:47,616 | INFO     | [monitor] control thread has ended
[2025-05-24 19:08:54] 2025-05-24 23:08:52,156 | INFO     | all workflow threads have been joined
[2025-05-24 19:08:54] 2025-05-24 23:08:52,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 19:08:54] 2025-05-24 23:08:52,156 | INFO     | traces error code: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:52,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 19:08:54] 2025-05-24 23:08:52,597 [wrapper] ==== pilot stdout END ====
[2025-05-24 19:08:54] 2025-05-24 23:08:52,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 19:08:54] 2025-05-24 23:08:52,698 [wrapper] pilotpid: 325136
[2025-05-24 19:08:54] 2025-05-24 23:08:52,739 [wrapper] Pilot exit status: 0
[2025-05-24 19:08:54] 2025-05-24 23:08:52,940 [wrapper] pandaids: 6665286102 6665286102
[2025-05-24 19:08:54] 2025-05-24 23:08:53,505 [wrapper] cleanup supervisor_pilot  79766 325137
[2025-05-24 19:08:54] 2025-05-24 23:08:53,540 [wrapper] Test setup, not cleaning
[2025-05-24 19:08:54] 2025-05-24 23:08:53,578 [wrapper] apfmon messages muted
[2025-05-24 19:08:54] 2025-05-24 23:08:53,613 [wrapper] ==== wrapper stdout END ====
[2025-05-24 19:08:54] 2025-05-24 23:08:53,648 [wrapper] ==== wrapper stderr END ====
[2025-05-24 19:08:54]  *** Error codes and diagnostics ***
[2025-05-24 19:08:54]     "exeErrorCode": 0,
[2025-05-24 19:08:54]     "exeErrorDiag": "",
[2025-05-24 19:08:54]     "pilotErrorCode": 0,
[2025-05-24 19:08:54]     "pilotErrorDiag": "",
[2025-05-24 19:08:54]  *** Listing of results directory ***
[2025-05-24 19:08:54] total 643392
[2025-05-24 19:08:54] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas    495897 May 24 04:12 pilot3.tar.gz
[2025-05-24 19:08:54] -rwx------ 1 boincer umatlas     37140 May 24 04:17 runpilot2-wrapper.sh
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas      5111 May 24 04:17 queuedata.json
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas       100 May 24 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 19:08:54] -rwxr-xr-x 1 boincer umatlas      7986 May 24 07:31 run_atlas
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas       105 May 24 07:31 job.xml
[2025-05-24 19:08:54] -rw-r--r-- 3 boincer umatlas 226004204 May 24 07:31 EVNT.44871834._000475.pool.root.1
[2025-05-24 19:08:54] -rw-r--r-- 3 boincer umatlas 226004204 May 24 07:31 ATLAS.root_0
[2025-05-24 19:08:54] -rw-r--r-- 2 boincer umatlas     15093 May 24 07:31 start_atlas.sh
[2025-05-24 19:08:54] drwxrwx--x 2 boincer umatlas      4096 May 24 07:31 shared
[2025-05-24 19:08:54] -rw-r--r-- 2 boincer umatlas    508874 May 24 07:31 input.tar.gz
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas         0 May 24 07:31 boinc_lockfile
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas      2558 May 24 13:09 pandaJob.out
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas    988572 May 24 13:10 agis_schedconf.cvmfs.json
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas 198489964 May 24 19:04 HITS.44871837._011872.pool.root.1
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas      6301 May 24 19:04 init_data.xml
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas       532 May 24 19:05 boinc_task_state.xml
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas      1065 May 24 19:07 memory_monitor_summary.json
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas   1596740 May 24 19:07 agis_ddmendpoints.agis.ALL.json
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas    467186 May 24 19:07 log.44871837._011872.job.log.tgz.1
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas        96 May 24 19:08 pilot_heartbeat.json
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas      7763 May 24 19:08 heartbeat.json
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas      4477 May 24 19:08 pilotlog.txt
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas   1782830 May 24 19:08 log.44871837._011872.job.log.1
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas        29 May 24 19:08 wrapper_checkpoint.txt
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas       357 May 24 19:08 output.list
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas      8192 May 24 19:08 boinc_mmap_file
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas       620 May 24 19:08 runtime_log
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas   2273280 May 24 19:08 result.tar.gz
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas      8755 May 24 19:08 runtime_log.err
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas       789 May 24 19:08 l2gMDmNFzc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKZQKDmewh8No.diag
[2025-05-24 19:08:54] -rw-r--r-- 1 boincer umatlas     23362 May 24 19:08 stderr.txt
[2025-05-24 19:08:54] HITS file was successfully produced:
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas 198489964 May 24 19:04 shared/HITS.pool.root.1
[2025-05-24 19:08:54]  *** Contents of shared directory: ***
[2025-05-24 19:08:54] total 417288
[2025-05-24 19:08:54] -rw-r--r-- 3 boincer umatlas 226004204 May 24 07:31 ATLAS.root_0
[2025-05-24 19:08:54] -rw-r--r-- 2 boincer umatlas     15093 May 24 07:31 start_atlas.sh
[2025-05-24 19:08:54] -rw-r--r-- 2 boincer umatlas    508874 May 24 07:31 input.tar.gz
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas 198489964 May 24 19:04 HITS.pool.root.1
[2025-05-24 19:08:54] -rw------- 1 boincer umatlas   2273280 May 24 19:08 result.tar.gz
19:08:55 (300450): run_atlas exited; CPU time 56942.033878
19:08:55 (300450): called boinc_finish(0)

</stderr_txt>
]]>

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