Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:44:21 (270268): wrapper (7.7.26015): starting
09:44:21 (270268): wrapper: running run_atlas (--nthreads 9)
[2025-05-24 09:44:21] Arguments: --nthreads 9
[2025-05-24 09:44:21] Threads: 9
[2025-05-24 09:44:21] Checking for CVMFS
[2025-05-24 09:44:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 09:44:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 09:44:21] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 09:44:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 09:44:21] 2.12.6.0 5047 15687 309468 146368 2 311 19417901 32935937 14586 16776704 1 37070585 99.570 48848535 23290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 09:44:21] CVMFS is ok
[2025-05-24 09:44:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 09:44:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 09:44:21] Further information can be found at the LHC@home message board.
[2025-05-24 09:44:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 09:44:21] Checking for apptainer binary...
[2025-05-24 09:44:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 09:44:21] Running /usr/bin/apptainer --version
[2025-05-24 09:44:22] apptainer version 1.4.1-1.el9
[2025-05-24 09:44:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 09:44:22] c6-6-39-2.aglt2.org
[2025-05-24 09:44:22] apptainer works
[2025-05-24 09:44:22] Set ATHENA_PROC_NUMBER=9
[2025-05-24 09:44:22] Set ATHENA_CORE_NUMBER=9
[2025-05-24 09:44:22] Starting ATLAS job with PandaID=6665278871
[2025-05-24 09:44:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 13:32:26]  *** The last 200 lines of the pilot log: ***
[2025-05-24 13:32:26] 2025-05-24 17:31:40,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 13:32:26] 2025-05-24 17:31:43,166 | INFO     | monitor loop #858: job 0:6665278871 is in state 'finished'
[2025-05-24 13:32:26] 2025-05-24 17:31:43,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 13:32:26] 2025-05-24 17:31:45,671 | INFO     | monitor loop #859: job 0:6665278871 is in state 'finished'
[2025-05-24 13:32:26] 2025-05-24 17:31:45,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,589 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-24 13:32:26] 2025-05-24 17:31:47,589 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6665278871/memory_monitor_summary.json (trf name=prmon)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,595 | INFO     | extracted standard info from prmon json
[2025-05-24 13:32:26] 2025-05-24 17:31:47,595 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 13:32:26] 2025-05-24 17:31:47,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 13:32:26] 2025-05-24 17:31:47,596 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 13:32:26] 2025-05-24 17:31:47,596 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 13:32:26] 2025-05-24 17:31:47,644 | INFO     | fitting pss+swap vs Time
[2025-05-24 13:32:26] 2025-05-24 17:31:47,645 | INFO     | sum of square deviations: 3347160858.1357374
[2025-05-24 13:32:26] 2025-05-24 17:31:47,646 | INFO     | sum of deviations: 16952527219.230764
[2025-05-24 13:32:26] 2025-05-24 17:31:47,646 | INFO     | mean x: 1748101095.837104
[2025-05-24 13:32:26] 2025-05-24 17:31:47,647 | INFO     | mean y: 2179500.923076923
[2025-05-24 13:32:26] 2025-05-24 17:31:47,647 | INFO     | -- intersect: -8851512527.983845
[2025-05-24 13:32:26] 2025-05-24 17:31:47,647 | INFO     | intersect: -8851512527.983845
[2025-05-24 13:32:26] 2025-05-24 17:31:47,647 | INFO     | chi2: 1.9885092788756618
[2025-05-24 13:32:26] 2025-05-24 17:31:47,652 | INFO     | sum of square deviations: 3125012818.217578
[2025-05-24 13:32:26] 2025-05-24 17:31:47,653 | INFO     | sum of deviations: 18222868140.773155
[2025-05-24 13:32:26] 2025-05-24 17:31:47,653 | INFO     | mean x: 1748100943.3101852
[2025-05-24 13:32:26] 2025-05-24 17:31:47,653 | INFO     | mean y: 2180361.421296296
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | -- intersect: -10191509981.54252
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | intersect: -10191509981.54252
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | chi2: 1.984530984208667
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | current chi2=1.984530984208667 (change=0.20006417416589778 %)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | right removable region: 215
[2025-05-24 13:32:26] 2025-05-24 17:31:47,654 | INFO     | sum of square deviations: 3125035149.550911
[2025-05-24 13:32:26] 2025-05-24 17:31:47,655 | INFO     | sum of deviations: -17148177148.958338
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | mean x: 1748101248.3564816
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | mean y: 2202752.7916666665
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | -- intersect: 9594654820.231619
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | intersect: 9594654820.231619
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | chi2: 0.4160728335510785
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | current chi2=0.4160728335510785 (change=79.07614322089894 %)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,656 | INFO     | sum of square deviations: 2912982128.2843504
[2025-05-24 13:32:26] 2025-05-24 17:31:47,657 | INFO     | sum of deviations: -13054593077.51659
[2025-05-24 13:32:26] 2025-05-24 17:31:47,657 | INFO     | mean x: 1748101400.8672986
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | mean y: 2199756.374407583
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | -- intersect: 7836354392.949522
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | intersect: 7836354392.949522
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | chi2: 0.37061188985547183
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | current chi2=0.37061188985547183 (change=10.92619849933695 %)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | left removable region: 20
[2025-05-24 13:32:26] 2025-05-24 17:31:47,658 | INFO     | sum of square deviations: 2299222313.979479
[2025-05-24 13:32:26] 2025-05-24 17:31:47,659 | INFO     | sum of deviations: 9981900581.1641
[2025-05-24 13:32:26] 2025-05-24 17:31:47,659 | INFO     | mean x: 1748101522.8564103
[2025-05-24 13:32:26] 2025-05-24 17:31:47,659 | INFO     | mean y: 2183569.1487179487
[2025-05-24 13:32:26] 2025-05-24 17:31:47,659 | INFO     | -- intersect: -7587067588.010151
[2025-05-24 13:32:26] 2025-05-24 17:31:47,659 | INFO     | intersect: -7587067588.010151
[2025-05-24 13:32:26] 2025-05-24 17:31:47,660 | INFO     | chi2: 0.12145075475771318
[2025-05-24 13:32:26] 2025-05-24 17:31:47,660 | INFO     | -- intersect: -7587067588.010151
[2025-05-24 13:32:26] 2025-05-24 17:31:47,660 | INFO     | current memory leak: 4.34 B/s (using 195 data points, chi2=0.12)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | ..............................
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . Timing measurements:
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . get job = 0 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . initial setup = 3 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . payload setup = 23 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . stage-in = 0 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . payload execution = 13491 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . stage-out = 5 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | . log creation = 0 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,661 | INFO     | ..............................
[2025-05-24 13:32:26] 2025-05-24 17:31:47,890 | INFO     | 
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | job summary report
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | --------------------------------------------------
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | PanDA job id: 6665278871
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | task id: 44871837
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | errors: (none)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | pilot state: finished 
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | transexitcode: 0
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | exeerrorcode: 0
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | exeerrordiag: 
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | exitcode: 0
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | exitmsg: OK
[2025-05-24 13:32:26] 2025-05-24 17:31:47,891 | INFO     | cpuconsumptiontime: 51237 s
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | nevents: 400
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | neventsw: 0
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | pid: 287655
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | pgrp: 287655
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | corecount: 9
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | event service: False
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | sizes: {0: 2393564, 1: 2393763, 12: 2393763, 18: 2393997, 24: 2394025, 13519: 2423888, 13520: 2424015, 13527: 2433040, 13530: 2433096, 13565: 2433266}
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | --------------------------------------------------
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | 
[2025-05-24 13:32:26] 2025-05-24 17:31:47,892 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:47,999 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 13:32:26] 2025-05-24 17:31:48,000 | INFO     | job 6665278871 has completed (purged errors)
[2025-05-24 13:32:26] 2025-05-24 17:31:48,000 | INFO     | overall cleanup function is called
[2025-05-24 13:32:26] 2025-05-24 17:31:49,026 | INFO     | --- collectZombieJob: --- 10, [287655]
[2025-05-24 13:32:26] 2025-05-24 17:31:49,027 | INFO     | zombie collector waiting for pid 287655
[2025-05-24 13:32:26] 2025-05-24 17:31:49,027 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 13:32:26] 2025-05-24 17:31:49,027 | INFO     | collected zombie processes
[2025-05-24 13:32:26] 2025-05-24 17:31:49,027 | INFO     | will attempt to kill all subprocesses of pid=287655
[2025-05-24 13:32:26] 2025-05-24 17:31:49,738 | INFO     | 13614s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-05-24 13:32:26] 2025-05-24 17:31:51,127 | INFO     | process IDs to be killed: [287655] (in reverse order)
[2025-05-24 13:32:26] 2025-05-24 17:31:51,301 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 13:32:26] 2025-05-24 17:31:51,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 13:32:26] 2025-05-24 17:31:51,505 | INFO     | did not find any defunct processes belonging to 287655
[2025-05-24 13:32:26] 2025-05-24 17:31:51,531 | INFO     | did not find any defunct processes belonging to 287655
[2025-05-24 13:32:26] 2025-05-24 17:31:51,531 | INFO     | ready for new job
[2025-05-24 13:32:26] 2025-05-24 17:31:51,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 13:32:26] 2025-05-24 17:31:51,533 | INFO     | **************************************
[2025-05-24 13:32:26] 2025-05-24 17:31:51,544 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 13:32:26] 2025-05-24 17:31:51,544 | INFO     | **************************************
[2025-05-24 13:32:26] 2025-05-24 17:31:51,544 | INFO     | 
[2025-05-24 13:32:26] 2025-05-24 17:31:51,640 | INFO     | architecture information:
[2025-05-24 13:32:26] 2025-05-24 17:31:51,671 | INFO     | executing command: cat /etc/os-release
[2025-05-24 13:32:26] 2025-05-24 17:31:51,840 | INFO     | cat /etc/os-release:
[2025-05-24 13:32:26] NAME="CentOS Linux"
[2025-05-24 13:32:26] VERSION="7 (Core)"
[2025-05-24 13:32:26] ID="centos"
[2025-05-24 13:32:26] ID_LIKE="rhel fedora"
[2025-05-24 13:32:26] VERSION_ID="7"
[2025-05-24 13:32:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 13:32:26] ANSI_COLOR="0;31"
[2025-05-24 13:32:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 13:32:26] HOME_URL="https://www.centos.org/"
[2025-05-24 13:32:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 13:32:26] 
[2025-05-24 13:32:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 13:32:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 13:32:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 13:32:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 13:32:26] 
[2025-05-24 13:32:26] 2025-05-24 17:31:51,840 | INFO     | **************************************
[2025-05-24 13:32:26] 2025-05-24 17:31:52,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-24 13:32:26] 2025-05-24 17:31:52,460 | INFO     | sufficient remaining disk space (75099013120 B)
[2025-05-24 13:32:26] 2025-05-24 17:31:52,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 13:32:26] 2025-05-24 17:31:52,460 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 13:32:26] 2025-05-24 17:31:52,460 | INFO     | update_server=False
[2025-05-24 13:32:26] 2025-05-24 17:31:52,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 13:32:26] 2025-05-24 17:31:52,492 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 13:32:26] 2025-05-24 17:31:52,492 | INFO     | aborting loop
[2025-05-24 13:32:26] 2025-05-24 17:31:52,553 | INFO     | PID=274398 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-24 13:32:26] 2025-05-24 17:31:52,553 | INFO     | .. there are 23 such processes running
[2025-05-24 13:32:26] 2025-05-24 17:31:52,553 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 13:32:26] 2025-05-24 17:31:52,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 13:32:26] 2025-05-24 17:31:52,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 13:32:26] 2025-05-24 17:31:52,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 13:32:26] 2025-05-24 17:31:52,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 13:32:26] 2025-05-24 17:31:53,019 | INFO     | all data control threads have been joined
[2025-05-24 13:32:26] 2025-05-24 17:31:53,230 | INFO     | all job control threads have been joined
[2025-05-24 13:32:26] 2025-05-24 17:31:53,322 | INFO     | all payload control threads have been joined
[2025-05-24 13:32:26] 2025-05-24 17:31:53,466 | INFO     | [job] retrieve thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,497 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,498 | INFO     | [job] job monitor thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,660 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,716 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,740 | INFO     | [job] validate thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:53,893 | INFO     | [job] queue monitor thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,025 | INFO     | [data] control thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,236 | INFO     | [job] control thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,329 | INFO     | [payload] control thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,363 | INFO     | [payload] failed_post thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,521 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,622 | INFO     | [payload] validate_post thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,912 | INFO     | [data] copytool_out thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:54,932 | INFO     | [data] copytool_in thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:55,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 13:32:26] 2025-05-24 17:31:59,372 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 13:32:26] 2025-05-24 17:31:59,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653631010624)>', '<ExcThread(monitor, started 140652973115136)>']
[2025-05-24 13:32:26] 2025-05-24 17:32:00,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 13:32:26] 2025-05-24 17:32:00,605 | INFO     | [monitor] control thread has ended
[2025-05-24 13:32:26] 2025-05-24 17:32:04,988 | INFO     | all workflow threads have been joined
[2025-05-24 13:32:26] 2025-05-24 17:32:04,989 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 13:32:26] 2025-05-24 17:32:04,989 | INFO     | traces error code: 0
[2025-05-24 13:32:26] 2025-05-24 17:32:04,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 13:32:26] 2025-05-24 17:32:06,044 [wrapper] ==== pilot stdout END ====
[2025-05-24 13:32:26] 2025-05-24 17:32:06,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 13:32:26] 2025-05-24 17:32:06,083 [wrapper] pilotpid: 274398
[2025-05-24 13:32:26] 2025-05-24 17:32:06,122 [wrapper] Pilot exit status: 0
[2025-05-24 13:32:26] 2025-05-24 17:32:06,279 [wrapper] pandaids: 6665278871
[2025-05-24 13:32:26] 2025-05-24 17:32:06,416 [wrapper] cleanup supervisor_pilot 1052452 274399
[2025-05-24 13:32:26] 2025-05-24 17:32:06,448 [wrapper] Test setup, not cleaning
[2025-05-24 13:32:26] 2025-05-24 17:32:06,495 [wrapper] apfmon messages muted
[2025-05-24 13:32:26] 2025-05-24 17:32:06,523 [wrapper] ==== wrapper stdout END ====
[2025-05-24 13:32:26] 2025-05-24 17:32:06,540 [wrapper] ==== wrapper stderr END ====
[2025-05-24 13:32:26]  *** Error codes and diagnostics ***
[2025-05-24 13:32:26]     "exeErrorCode": 0,
[2025-05-24 13:32:26]     "exeErrorDiag": "",
[2025-05-24 13:32:26]     "pilotErrorCode": 0,
[2025-05-24 13:32:26]     "pilotErrorDiag": "",
[2025-05-24 13:32:26]  *** Listing of results directory ***
[2025-05-24 13:32:26] total 424348
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas    495897 May 24 03:04 pilot3.tar.gz
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas      5111 May 24 03:13 queuedata.json
[2025-05-24 13:32:26] -rwx------. 1 boincer umatlas     37140 May 24 03:14 runpilot2-wrapper.sh
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas       100 May 24 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 13:32:26] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 09:44 run_atlas
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas       105 May 24 09:44 job.xml
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas 226014271 May 24 09:44 EVNT.44871834._000388.pool.root.1
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas     15093 May 24 09:44 start_atlas.sh
[2025-05-24 13:32:26] drwxrwx--x. 2 boincer umatlas      4096 May 24 09:44 shared
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas    508878 May 24 09:44 input.tar.gz
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas         0 May 24 09:44 boinc_lockfile
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas      2556 May 24 09:44 pandaJob.out
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas    988556 May 24 09:44 agis_schedconf.cvmfs.json
[2025-05-24 13:32:26] drwx------. 4 boincer umatlas      4096 May 24 09:44 pilot3
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas      6841 May 24 13:28 init_data.xml
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas 201626428 May 24 13:30 HITS.44871837._009691.pool.root.1
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas       530 May 24 13:30 boinc_task_state.xml
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas      1040 May 24 13:30 memory_monitor_summary.json
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas   1596740 May 24 13:31 agis_ddmendpoints.agis.ALL.json
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas    404520 May 24 13:31 log.44871837._009691.job.log.tgz.1
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas        95 May 24 13:31 pilot_heartbeat.json
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas      7720 May 24 13:31 heartbeat.json
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas      4747 May 24 13:32 pilotlog.txt
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas   1126259 May 24 13:32 log.44871837._009691.job.log.1
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas       357 May 24 13:32 output.list
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas       620 May 24 13:32 runtime_log
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas   1546240 May 24 13:32 result.tar.gz
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas       657 May 24 13:32 sE4KDmaGyc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmk0LKDmQMpuRm.diag
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas      8665 May 24 13:32 runtime_log.err
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas        28 May 24 13:32 wrapper_checkpoint.txt
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas      8192 May 24 13:32 boinc_mmap_file
[2025-05-24 13:32:26] -rw-r--r--. 1 boincer umatlas     21271 May 24 13:32 stderr.txt
[2025-05-24 13:32:26] HITS file was successfully produced:
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas 201626428 May 24 13:30 shared/HITS.pool.root.1
[2025-05-24 13:32:26]  *** Contents of shared directory: ***
[2025-05-24 13:32:26] total 419660
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas 226014271 May 24 09:44 ATLAS.root_0
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas     15093 May 24 09:44 start_atlas.sh
[2025-05-24 13:32:26] -rw-r--r--. 2 boincer umatlas    508878 May 24 09:44 input.tar.gz
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas 201626428 May 24 13:30 HITS.pool.root.1
[2025-05-24 13:32:26] -rw-------. 1 boincer umatlas   1546240 May 24 13:32 result.tar.gz
13:32:27 (270268): run_atlas exited; CPU time 51561.226122
13:32:27 (270268): called boinc_finish(0)

</stderr_txt>
]]>

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