Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:32:43 (3428126): wrapper (7.7.26015): starting
10:32:43 (3428126): wrapper: running run_atlas (--nthreads 4)
[2025-05-25 10:32:43] Arguments: --nthreads 4
[2025-05-25 10:32:43] Threads: 4
[2025-05-25 10:32:43] Checking for CVMFS
[2025-05-25 10:32:43] No cvmfs_config command found, will try listing directly
[2025-05-25 10:32:43] CVMFS is ok
[2025-05-25 10:32:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-25 10:32:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-25 10:32:43] Further information can be found at the LHC@home message board.
[2025-05-25 10:32:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-25 10:32:43] Checking for apptainer binary...
[2025-05-25 10:32:43] which: no apptainer in ((null))
[2025-05-25 10:32:43] apptainer is not installed, using version from CVMFS
[2025-05-25 10:32:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-25 10:32:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot16/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-05-25 10:32:43] apptainer works
[2025-05-25 10:32:43] Set ATHENA_PROC_NUMBER=4
[2025-05-25 10:32:43] Set ATHENA_CORE_NUMBER=4
[2025-05-25 10:32:43] Starting ATLAS job with PandaID=6665375913
[2025-05-25 10:32:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot16/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 14:14:25]  *** The last 200 lines of the pilot log: ***
[2025-05-25 14:14:25] 2025-05-25 12:14:01,241 | INFO     | number of running child processes to parent process 3439726: 1
[2025-05-25 14:14:25] 2025-05-25 12:14:01,242 | INFO     | maximum number of monitored processes: 6
[2025-05-25 14:14:25] 2025-05-25 12:14:03,747 | INFO     | monitor loop #893: job 0:6665375913 is in state 'finished'
[2025-05-25 14:14:25] 2025-05-25 12:14:03,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 14:14:25] 2025-05-25 12:14:05,298 | INFO     | PID=3432063 has CPU usage=22.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-25 14:14:25] 2025-05-25 12:14:05,299 | INFO     | .. there are 30 such processes running
[2025-05-25 14:14:25] 2025-05-25 12:14:06,252 | INFO     | monitor loop #894: job 0:6665375913 is in state 'finished'
[2025-05-25 14:14:25] 2025-05-25 12:14:06,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 14:14:25] 2025-05-25 12:14:07,738 | INFO     | using path: /scratch/boinc/var/slot16/slots/0/PanDA_Pilot-6665375913/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,739 | INFO     | extracted standard info from prmon json
[2025-05-25 14:14:25] 2025-05-25 12:14:07,739 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 14:14:25] 2025-05-25 12:14:07,739 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 14:14:25] 2025-05-25 12:14:07,740 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 14:14:25] 2025-05-25 12:14:07,740 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 14:14:25] 2025-05-25 12:14:07,744 | INFO     | fitting pss+swap vs Time
[2025-05-25 14:14:25] 2025-05-25 12:14:07,744 | INFO     | sum of square deviations: 3168461268.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,746 | INFO     | sum of deviations: 22028230451.999996
[2025-05-25 14:14:25] 2025-05-25 12:14:07,746 | INFO     | mean x: 1748168604.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,746 | INFO     | mean y: 2315081.64516129
[2025-05-25 14:14:25] 2025-05-25 12:14:07,746 | INFO     | -- intersect: -12151553190.877817
[2025-05-25 14:14:25] 2025-05-25 12:14:07,746 | INFO     | intersect: -12151553190.877817
[2025-05-25 14:14:25] 2025-05-25 12:14:07,747 | INFO     | chi2: 1.4390707592395038
[2025-05-25 14:14:25] 2025-05-25 12:14:07,747 | INFO     | sum of square deviations: 2954447953.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,748 | INFO     | sum of deviations: 21374306730.999992
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | mean x: 1748168451.5
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | mean y: 2314615.613207547
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | -- intersect: -12645018928.332384
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | intersect: -12645018928.332384
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | chi2: 1.4398960262618004
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | current chi2=1.4398960262618004 (change=-0.057347216389324406 %)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,749 | INFO     | right removable region: 211
[2025-05-25 14:14:25] 2025-05-25 12:14:07,750 | INFO     | sum of square deviations: 2954447953.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,751 | INFO     | sum of deviations: -7447884822.499992
[2025-05-25 14:14:25] 2025-05-25 12:14:07,751 | INFO     | mean x: 1748168756.5
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | mean y: 2335846.853773585
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | -- intersect: 4409304510.99427
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | intersect: 4409304510.99427
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | chi2: 0.018939847139297673
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | current chi2=0.018939847139297673 (change=98.68388353959004 %)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,752 | INFO     | sum of square deviations: 2750295288.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,754 | INFO     | sum of deviations: -5867996686.999999
[2025-05-25 14:14:25] 2025-05-25 12:14:07,754 | INFO     | mean x: 1748168909.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,754 | INFO     | mean y: 2334667.850241546
[2025-05-25 14:14:25] 2025-05-25 12:14:07,754 | INFO     | -- intersect: 3732206660.5365787
[2025-05-25 14:14:25] 2025-05-25 12:14:07,754 | INFO     | intersect: 3732206660.5365787
[2025-05-25 14:14:25] 2025-05-25 12:14:07,755 | INFO     | chi2: 0.017833165924497962
[2025-05-25 14:14:25] 2025-05-25 12:14:07,755 | INFO     | current chi2=0.017833165924497962 (change=5.84313699398077 %)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,755 | INFO     | left removable region: 20
[2025-05-25 14:14:25] 2025-05-25 12:14:07,755 | INFO     | sum of square deviations: 2160561440.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,756 | INFO     | sum of deviations: -2327862236.000002
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | mean x: 1748169031.0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | mean y: 2331624.7434554975
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | -- intersect: 1885868280.5719593
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | intersect: 1885868280.5719593
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | chi2: 0.013184267669384324
[2025-05-25 14:14:25] 2025-05-25 12:14:07,757 | INFO     | -- intersect: 1885868280.5719593
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | current memory leak: -1.08 B/s (using 191 data points, chi2=0.01)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | ..............................
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . Timing measurements:
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . get job = 0 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . initial setup = 1 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . payload setup = 10 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . stage-in = 0 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,758 | INFO     | . payload execution = 13223 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,759 | INFO     | . stage-out = 1 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,759 | INFO     | . log creation = 0 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,759 | INFO     | ..............................
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | 
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | job summary report
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | --------------------------------------------------
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | PanDA job id: 6665375913
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | task id: 44871837
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | errors: (none)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 14:14:25] 2025-05-25 12:14:07,862 | INFO     | pilot state: finished 
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | transexitcode: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | exeerrorcode: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | exeerrordiag: 
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | exitcode: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | exitmsg: OK
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | cpuconsumptiontime: 50550 s
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | nevents: 400
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | neventsw: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | pid: 3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | pgrp: 3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | corecount: 4
[2025-05-25 14:14:25] 2025-05-25 12:14:07,863 | INFO     | event service: False
[2025-05-25 14:14:25] 2025-05-25 12:14:07,864 | INFO     | sizes: {0: 2393579, 1: 2393778, 7: 2393984, 12: 2394012, 13238: 2424485, 13239: 2433448, 13242: 2433632, 13251: 2433802}
[2025-05-25 14:14:25] 2025-05-25 12:14:07,864 | INFO     | --------------------------------------------------
[2025-05-25 14:14:25] 2025-05-25 12:14:07,864 | INFO     | 
[2025-05-25 14:14:25] 2025-05-25 12:14:07,864 | INFO     | executing command: ls -lF /scratch/boinc/var/slot16/slots/0
[2025-05-25 14:14:25] 2025-05-25 12:14:07,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 14:14:25] 2025-05-25 12:14:07,895 | INFO     | job 6665375913 has completed (purged errors)
[2025-05-25 14:14:25] 2025-05-25 12:14:07,896 | INFO     | overall cleanup function is called
[2025-05-25 14:14:25] 2025-05-25 12:14:08,904 | INFO     | --- collectZombieJob: --- 10, [3439726]
[2025-05-25 14:14:25] 2025-05-25 12:14:08,904 | INFO     | zombie collector waiting for pid 3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:08,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 14:14:25] 2025-05-25 12:14:08,905 | INFO     | collected zombie processes
[2025-05-25 14:14:25] 2025-05-25 12:14:08,905 | INFO     | will attempt to kill all subprocesses of pid=3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:09,649 | INFO     | process IDs to be killed: [3439726] (in reverse order)
[2025-05-25 14:14:25] 2025-05-25 12:14:09,945 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 14:14:25] 2025-05-25 12:14:09,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 14:14:25] 2025-05-25 12:14:09,970 | INFO     | did not find any defunct processes belonging to 3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:09,990 | INFO     | did not find any defunct processes belonging to 3439726
[2025-05-25 14:14:25] 2025-05-25 12:14:09,991 | INFO     | ready for new job
[2025-05-25 14:14:25] 2025-05-25 12:14:09,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 14:14:25] 2025-05-25 12:14:09,993 | INFO     | **************************************
[2025-05-25 14:14:25] 2025-05-25 12:14:09,993 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 14:14:25] 2025-05-25 12:14:09,993 | INFO     | **************************************
[2025-05-25 14:14:25] 2025-05-25 12:14:09,993 | INFO     | 
[2025-05-25 14:14:25] 2025-05-25 12:14:10,002 | INFO     | architecture information:
[2025-05-25 14:14:25] 2025-05-25 12:14:10,002 | INFO     | executing command: cat /etc/os-release
[2025-05-25 14:14:25] 2025-05-25 12:14:10,027 | INFO     | cat /etc/os-release:
[2025-05-25 14:14:25] NAME="CentOS Linux"
[2025-05-25 14:14:25] VERSION="7 (Core)"
[2025-05-25 14:14:25] ID="centos"
[2025-05-25 14:14:25] ID_LIKE="rhel fedora"
[2025-05-25 14:14:25] VERSION_ID="7"
[2025-05-25 14:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 14:14:25] ANSI_COLOR="0;31"
[2025-05-25 14:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 14:14:25] HOME_URL="https://www.centos.org/"
[2025-05-25 14:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 14:14:25] 
[2025-05-25 14:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 14:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 14:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 14:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 14:14:25] 
[2025-05-25 14:14:25] 2025-05-25 12:14:10,028 | INFO     | **************************************
[2025-05-25 14:14:25] 2025-05-25 12:14:10,531 | INFO     | executing command: df -mP /scratch/boinc/var/slot16/slots/0
[2025-05-25 14:14:25] 2025-05-25 12:14:10,555 | INFO     | sufficient remaining disk space (3297767325696 B)
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | INFO     | update_server=False
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 14:14:25] 2025-05-25 12:14:10,556 | INFO     | aborting loop
[2025-05-25 14:14:25] 2025-05-25 12:14:10,721 | INFO     | all data control threads have been joined
[2025-05-25 14:14:25] 2025-05-25 12:14:11,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 14:14:25] 2025-05-25 12:14:11,100 | INFO     | all job control threads have been joined
[2025-05-25 14:14:25] 2025-05-25 12:14:11,113 | INFO     | all payload control threads have been joined
[2025-05-25 14:14:25] 2025-05-25 12:14:11,314 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 14:14:25] 2025-05-25 12:14:11,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 14:14:25] 2025-05-25 12:14:11,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 14:14:25] 2025-05-25 12:14:11,561 | INFO     | [job] retrieve thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:11,562 | INFO     | [job] job monitor thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:11,695 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:11,726 | INFO     | [data] control thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:11,786 | INFO     | [job] validate thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:11,966 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,106 | INFO     | [job] control thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,118 | INFO     | [payload] control thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,315 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,741 | INFO     | [data] copytool_in thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,775 | INFO     | [payload] failed_post thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:12,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 14:14:25] 2025-05-25 12:14:12,911 | INFO     | [payload] validate_post thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:13,013 | INFO     | [data] copytool_out thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:13,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 14:14:25] 2025-05-25 12:14:13,877 | INFO     | [job] queue monitor thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:17,668 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 14:14:25] 2025-05-25 12:14:19,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23266058876736)>', '<ExcThread(monitor, started 23265808426752)>']
[2025-05-25 14:14:25] 2025-05-25 12:14:20,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 14:14:25] 2025-05-25 12:14:20,360 | INFO     | [monitor] control thread has ended
[2025-05-25 14:14:25] 2025-05-25 12:14:24,577 | INFO     | all workflow threads have been joined
[2025-05-25 14:14:25] 2025-05-25 12:14:24,578 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 14:14:25] 2025-05-25 12:14:24,578 | INFO     | traces error code: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:24,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 14:14:25] 2025-05-25 12:14:24,726 [wrapper] ==== pilot stdout END ====
[2025-05-25 14:14:25] 2025-05-25 12:14:24,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 14:14:25] 2025-05-25 12:14:24,733 [wrapper] pilotpid: 3432063
[2025-05-25 14:14:25] 2025-05-25 12:14:24,737 [wrapper] Pilot exit status: 0
[2025-05-25 14:14:25] 2025-05-25 12:14:24,749 [wrapper] pandaids: 6665375913
[2025-05-25 14:14:25] 2025-05-25 12:14:24,903 [wrapper] cleanup supervisor_pilot  420871 3432064
[2025-05-25 14:14:25] 2025-05-25 12:14:24,908 [wrapper] Test setup, not cleaning
[2025-05-25 14:14:25] 2025-05-25 12:14:24,913 [wrapper] apfmon messages muted
[2025-05-25 14:14:25] 2025-05-25 12:14:24,917 [wrapper] ==== wrapper stdout END ====
[2025-05-25 14:14:25] 2025-05-25 12:14:24,920 [wrapper] ==== wrapper stderr END ====
[2025-05-25 14:14:25]  *** Error codes and diagnostics ***
[2025-05-25 14:14:25]     "exeErrorCode": 0,
[2025-05-25 14:14:25]     "exeErrorDiag": "",
[2025-05-25 14:14:25]     "pilotErrorCode": 0,
[2025-05-25 14:14:25]     "pilotErrorDiag": "",
[2025-05-25 14:14:25]  *** Listing of results directory ***
[2025-05-25 14:14:25] total 414304
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc    495897 May 24 11:05 pilot3.tar.gz
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc      5111 May 24 11:09 queuedata.json
[2025-05-25 14:14:25] -rwx------ 1 boinc boinc     37140 May 24 11:11 runpilot2-wrapper.sh
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc       100 May 25 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 14:14:25] -rwxr-xr-x 1 boinc boinc      7986 May 25 10:32 run_atlas
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc       105 May 25 10:32 job.xml
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc 222237202 May 25 10:32 EVNT.44871834._000552.pool.root.1
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc      6675 May 25 10:32 init_data.xml
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc     15093 May 25 10:32 start_atlas.sh
[2025-05-25 14:14:25] drwxrwx--x 2 boinc boinc      4096 May 25 10:32 shared
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc    508873 May 25 10:32 input.tar.gz
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc         0 May 25 10:32 boinc_lockfile
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc      2558 May 25 10:32 pandaJob.out
[2025-05-25 14:14:25] -rw------- 1 boinc boinc    990811 May 25 10:32 agis_schedconf.cvmfs.json
[2025-05-25 14:14:25] drwx------ 4 boinc boinc      4096 May 25 10:32 pilot3
[2025-05-25 14:14:25] -rw------- 1 boinc boinc 195104579 May 25 14:13 HITS.44871837._013798.pool.root.1
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc       530 May 25 14:13 boinc_task_state.xml
[2025-05-25 14:14:25] -rw------- 1 boinc boinc      1027 May 25 14:13 memory_monitor_summary.json
[2025-05-25 14:14:25] -rw------- 1 boinc boinc   1596740 May 25 14:13 agis_ddmendpoints.agis.ALL.json
[2025-05-25 14:14:25] -rw------- 1 boinc boinc    332350 May 25 14:13 log.44871837._013798.job.log.tgz.1
[2025-05-25 14:14:25] -rw------- 1 boinc boinc        95 May 25 14:14 pilot_heartbeat.json
[2025-05-25 14:14:25] -rw------- 1 boinc boinc      7697 May 25 14:14 heartbeat.json
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc      8192 May 25 14:14 boinc_mmap_file
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc        28 May 25 14:14 wrapper_checkpoint.txt
[2025-05-25 14:14:25] -rw------- 1 boinc boinc      4364 May 25 14:14 pilotlog.txt
[2025-05-25 14:14:25] -rw------- 1 boinc boinc   1203755 May 25 14:14 log.44871837._013798.job.log.1
[2025-05-25 14:14:25] -rw------- 1 boinc boinc       357 May 25 14:14 output.list
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc       620 May 25 14:14 runtime_log
[2025-05-25 14:14:25] -rw------- 1 boinc boinc   1556480 May 25 14:14 result.tar.gz
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc      9026 May 25 14:14 runtime_log.err
[2025-05-25 14:14:25] -rw------- 1 boinc boinc       666 May 25 14:14 e1OKDmu5zc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnsQKDm03BcUm.diag
[2025-05-25 14:14:25] -rw-r--r-- 1 boinc boinc     20941 May 25 14:14 stderr.txt
[2025-05-25 14:14:25] HITS file was successfully produced:
[2025-05-25 14:14:25] -rw------- 1 boinc boinc 195104579 May 25 14:13 shared/HITS.pool.root.1
[2025-05-25 14:14:25]  *** Contents of shared directory: ***
[2025-05-25 14:14:25] total 409608
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc 222237202 May 25 10:32 ATLAS.root_0
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc     15093 May 25 10:32 start_atlas.sh
[2025-05-25 14:14:25] -rw-r--r-- 2 boinc boinc    508873 May 25 10:32 input.tar.gz
[2025-05-25 14:14:25] -rw------- 1 boinc boinc 195104579 May 25 14:13 HITS.pool.root.1
[2025-05-25 14:14:25] -rw------- 1 boinc boinc   1556480 May 25 14:14 result.tar.gz
14:14:26 (3428126): run_atlas exited; CPU time 51277.292043
14:14:26 (3428126): called boinc_finish(0)

</stderr_txt>
]]>

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