Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 06:26:47 (588): Detected: vboxwrapper 26206
2025-05-24 06:26:47 (588): Detected: BOINC client v8.0.4
2025-05-24 06:26:48 (588): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-24 06:26:48 (588): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 06:26:49 (588): Create VM. (boinc_f8bd7cd419df0d19, slot#2)
2025-05-24 06:26:49 (588): Setting Memory Size for VM. (4400MB)
2025-05-24 06:26:49 (588): Setting CPU Count for VM. (4)
2025-05-24 06:26:50 (588): Setting Chipset Options for VM.
2025-05-24 06:26:50 (588): Setting Graphics Controller Options for VM.
2025-05-24 06:26:50 (588): Setting Boot Options for VM.
2025-05-24 06:26:50 (588): Setting Network Configuration for NAT.
2025-05-24 06:26:51 (588): Enabling VM Network Access.
2025-05-24 06:26:51 (588): Disabling USB Support for VM.
2025-05-24 06:26:51 (588): Disabling COM Port Support for VM.
2025-05-24 06:26:51 (588): Disabling LPT Port Support for VM.
2025-05-24 06:26:52 (588): Disabling Audio Support for VM.
2025-05-24 06:26:52 (588): Disabling Clipboard Support for VM.
2025-05-24 06:26:52 (588): Disabling Drag and Drop Support for VM.
2025-05-24 06:26:52 (588): Adding storage controller(s) to VM.
2025-05-24 06:26:53 (588): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 06:26:53 (588): Adding VirtualBox Guest Additions to VM.
2025-05-24 06:26:53 (588): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 06:26:54 (588): forwarding host port 53553 to guest port 80
2025-05-24 06:26:54 (588): Enabling remote desktop for VM.
2025-05-24 06:26:54 (588): Required extension pack not installed, remote desktop not enabled.
2025-05-24 06:26:54 (588): Enabling shared directory for VM.
2025-05-24 06:26:55 (588): Starting VM using VBoxManage interface. (boinc_f8bd7cd419df0d19, slot#2)
2025-05-24 06:27:00 (588): Successfully started VM. (PID = '2208')
2025-05-24 06:27:00 (588): Reporting VM Process ID to BOINC.
2025-05-24 06:27:00 (588): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-24 06:27:00 (588): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 06:27:00 (588): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 06:27:00 (588): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 06:27:00 (588): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 06:27:00 (588): Detected: Web Application Enabled (http://localhost:53553)
2025-05-24 06:27:00 (588): Preference change detected
2025-05-24 06:27:00 (588): Setting CPU throttle for VM. (60%)
2025-05-24 06:27:00 (588): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 06:27:02 (588): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 06:27:02 (588): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 06:27:05 (588): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 06:27:05 (588): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 06:27:05 (588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 06:27:12 (588): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 06:27:12 (588): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 06:27:21 (588): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000128 main     Log opened 2025-05-24T06:27:18.819509000Z
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000205 main     OS Product: Linux
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000240 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000264 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000286 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000287 main     Process ID: 1306
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.000287 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 06:27:21 (588): Guest Log: 00:00:00.001044 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 06:27:21 (588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 06:27:21 (588): Guest Log: [INFO] Mounting shared directory
2025-05-24 06:27:21 (588): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 06:27:23 (588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 06:27:23 (588): Guest Log: [INFO] Detected branch: prod
2025-05-24 06:27:23 (588): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 06:27:23 (588): Guest Log: Copying input files
2025-05-24 06:27:25 (588): Guest Log: Copied input files into RunAtlas.
2025-05-24 06:27:25 (588): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 06:27:25 (588): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 06:27:25 (588): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 06:27:25 (588): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 06:27:31 (588): Guest Log: 00:00:10.012637 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 866 919 000ns (GuestNow=1 748 082 450 688 431 000 ns GuestLast=1 748 068 038 821 512 000 ns fSetTimeLastLoop=true )
2025-05-24 06:27:33 (588): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 06:27:33 (588): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 06:27:33 (588): Guest Log: 2.6.3.0 1583 0 30156 146364 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 06:27:34 (588): Guest Log: copied the webapp to /var/www
2025-05-24 06:27:34 (588): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-24 06:27:34 (588): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-24 06:27:35 (588): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 06:27:35 (588): Guest Log:  *** Starting ATLAS job. (PandaID=6665281283 taskID=44871837) ***
2025-05-24 08:07:04 (588): Status Report: Elapsed Time: '6000.000000'
2025-05-24 08:07:04 (588): Status Report: CPU Time: '13585.171875'
2025-05-24 09:47:09 (588): Status Report: Elapsed Time: '12000.000000'
2025-05-24 09:47:09 (588): Status Report: CPU Time: '28069.796875'
2025-05-24 11:14:30 (588): Guest Log:  *** Job finished ***
2025-05-24 11:14:30 (588): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:20,363 | INFO     | [data] copytool_out thread has finished
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:20,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:24,507 | INFO     | [data] queue_monitor thread has finished
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:24,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767934027584)>', '<ExcThread(monitor, started 139767220004608)>']
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:25,522 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:25,522 | INFO     | [monitor] control thread has ended
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,614 | INFO     | all workflow threads have been joined
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,614 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,614 | INFO     | traces error code: 0
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,614 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,671 [wrapper] ==== pilot stdout END ====
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,677 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,683 [wrapper] pilotpid: 5879
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,689 [wrapper] Pilot exit status: 0
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,748 [wrapper] pandaids: 6665281283
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,769 [wrapper] cleanup supervisor_pilot 17483 5880
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,778 [wrapper] Test setup, not cleaning
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,782 [wrapper] apfmon messages muted
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,785 [wrapper] ==== wrapper stdout END ====
2025-05-24 11:14:30 (588): Guest Log: 2025-05-24 15:14:29,789 [wrapper] ==== wrapper stderr END ====
2025-05-24 11:14:30 (588): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 11:14:30 (588): Guest Log:     "exeErrorCode": 0,
2025-05-24 11:14:30 (588): Guest Log:     "exeErrorDiag": "",
2025-05-24 11:14:30 (588): Guest Log:     "pilotErrorCode": 0,
2025-05-24 11:14:30 (588): Guest Log:     "pilotErrorDiag": "",
2025-05-24 11:14:30 (588): Guest Log:  *** Listing of results directory ***
2025-05-24 11:14:30 (588): Guest Log: total 201200
2025-05-24 11:14:30 (588): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 07:23 pilot3.tar.gz
2025-05-24 11:14:30 (588): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 07:41 runpilot2-wrapper.sh
2025-05-24 11:14:30 (588): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 07:41 queuedata.json
2025-05-24 11:14:30 (588): Guest Log: -rwxr-xr-x. 1 atlas atlas     12280 May 24 10:27 init_data.xml
2025-05-24 11:14:30 (588): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 May 24 10:27 input.tar.gz
2025-05-24 11:14:30 (588): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 10:27 start_atlas.sh
2025-05-24 11:14:30 (588): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 10:27 EVNT.44871834._000425.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 11:14:30 (588): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 24 10:27 pandaJob.out
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas    988564 May 24 10:28 agis_schedconf.cvmfs.json
2025-05-24 11:14:30 (588): Guest Log: drwx------. 4 atlas atlas      4096 May 24 10:28 pilot3
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas 199231103 May 24 15:13 HITS.44871837._010613.pool.root.1
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas        95 May 24 15:13 pilot_heartbeat.json
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas      1035 May 24 15:14 memory_monitor_summary.json
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 15:14 agis_ddmendpoints.agis.ALL.json
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas    329111 May 24 15:14 log.44871837._010613.job.log.tgz.1
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas      7696 May 24 15:14 heartbeat.json
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas      4722 May 24 15:14 pilotlog.txt
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas   1188464 May 24 15:14 log.44871837._010613.job.log.1
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas       357 May 24 15:14 output.list
2025-05-24 11:14:30 (588): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 15:14 runtime_log
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas   1536000 May 24 15:14 result.tar.gz
2025-05-24 11:14:30 (588): Guest Log: -rw-r--r--. 1 atlas atlas      8553 May 24 15:14 runtime_log.err
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas       647 May 24 15:14 G6JLDmYgyc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmb5LKDmWKS13n.diag
2025-05-24 11:14:30 (588): Guest Log: Looking for outputfile HITS.44871837._010613.pool.root.1
2025-05-24 11:14:30 (588): Guest Log: HITS file was successfully produced
2025-05-24 11:14:30 (588): Guest Log: -rw-------. 1 atlas atlas 199231103 May 24 15:13 /home/atlas/RunAtlas/HITS.44871837._010613.pool.root.1
2025-05-24 11:14:32 (588): Guest Log: Successfully finished the ATLAS job!
2025-05-24 11:14:32 (588): Guest Log: Copying the results back to the shared directory!
2025-05-24 11:14:32 (588): Guest Log:  *** Contents of shared directory: ***
2025-05-24 11:14:32 (588): Guest Log: total 415476
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root 224136949 May 24 10:26 ATLAS.root_0
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root 199231103 May 24 15:14 HITS.pool.root.1
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root     12280 May 24 10:26 init_data.xml
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root    508874 May 24 10:26 input.tar.gz
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root   1536000 May 24 15:14 result.tar.gz
2025-05-24 11:14:32 (588): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 10:26 start_atlas.sh
2025-05-24 11:14:32 (588): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 11:14:32 (588): VM Completion File Detected.
2025-05-24 11:14:32 (588): Powering off VM.
2025-05-24 11:14:32 (588): Successfully stopped VM.
2025-05-24 11:14:32 (588): Deregistering VM. (boinc_f8bd7cd419df0d19, slot#2)
2025-05-24 11:14:32 (588): Removing network bandwidth throttle group from VM.
2025-05-24 11:14:33 (588): Removing VM from VirtualBox.
11:14:38 (588): called boinc_finish(0)

</stderr_txt>
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