Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 11:39:22 (1120909): Detected: vboxwrapper 26206
2025-05-24 11:39:22 (1120909): Detected: BOINC client v8.2.2
2025-05-24 11:39:23 (1120909): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-05-24 11:39:23 (1120909): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 11:39:23 (1120909): Create VM. (boinc_4244a3e331b06d42, slot#3)
2025-05-24 11:39:23 (1120909): Setting Memory Size for VM. (4096MB)
2025-05-24 11:39:23 (1120909): Setting CPU Count for VM. (1)
2025-05-24 11:39:23 (1120909): Setting Chipset Options for VM.
2025-05-24 11:39:23 (1120909): Setting Graphics Controller Options for VM.
2025-05-24 11:39:23 (1120909): Setting Boot Options for VM.
2025-05-24 11:39:23 (1120909): Setting Network Configuration for NAT.
2025-05-24 11:39:24 (1120909): Enabling VM Network Access.
2025-05-24 11:39:24 (1120909): Disabling USB Support for VM.
2025-05-24 11:39:24 (1120909): Disabling COM Port Support for VM.
2025-05-24 11:39:24 (1120909): Disabling LPT Port Support for VM.
2025-05-24 11:39:24 (1120909): Disabling Audio Support for VM.
2025-05-24 11:39:24 (1120909): Disabling Clipboard Support for VM.
2025-05-24 11:39:24 (1120909): Disabling Drag and Drop Support for VM.
2025-05-24 11:39:24 (1120909): Adding storage controller(s) to VM.
2025-05-24 11:39:24 (1120909): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 11:39:25 (1120909): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 11:39:25 (1120909): forwarding host port 60759 to guest port 80
2025-05-24 11:39:25 (1120909): Enabling remote desktop for VM.
2025-05-24 11:39:25 (1120909): Enabling shared directory for VM.
2025-05-24 11:39:25 (1120909): Starting VM using VBoxManage interface. (boinc_4244a3e331b06d42, slot#3)
2025-05-24 11:39:26 (1120909): Successfully started VM. (PID = '1121297')
2025-05-24 11:39:26 (1120909): Reporting VM Process ID to BOINC.
2025-05-24 11:39:26 (1120909): Guest Log: BIOS: VirtualBox 7.0.20
2025-05-24 11:39:26 (1120909): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 11:39:26 (1120909): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 11:39:26 (1120909): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 11:39:26 (1120909): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 11:39:26 (1120909): Detected: Web Application Enabled (http://localhost:60759)
2025-05-24 11:39:26 (1120909): Detected: Remote Desktop Enabled (localhost:51851)
2025-05-24 11:39:26 (1120909): Preference change detected
2025-05-24 11:39:26 (1120909): Setting CPU throttle for VM. (100%)
2025-05-24 11:39:27 (1120909): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 11:39:28 (1120909): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 11:39:28 (1120909): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 11:39:31 (1120909): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 11:39:31 (1120909): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 11:39:31 (1120909): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 11:39:35 (1120909): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 11:39:35 (1120909): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 11:39:48 (1120909): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000215 main     Log opened 2025-05-24T09:39:46.452412000Z
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000413 main     OS Product: Linux
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000473 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000537 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000582 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000584 main     Process ID: 1233
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.000584 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 11:39:48 (1120909): Guest Log: 00:00:00.002969 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 11:39:48 (1120909): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 11:39:48 (1120909): Guest Log: [INFO] Mounting shared directory
2025-05-24 11:39:48 (1120909): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 11:39:51 (1120909): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 11:39:51 (1120909): Guest Log: [INFO] Detected branch: prod
2025-05-24 11:39:51 (1120909): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 11:39:51 (1120909): Guest Log: Copying input files
2025-05-24 11:39:53 (1120909): Guest Log: Copied input files into RunAtlas.
2025-05-24 11:39:53 (1120909): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2025-05-24 11:40:06 (1120909): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 11:40:07 (1120909): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 11:40:07 (1120909): Guest Log: 2.6.3.0 1502 0 29536 146362 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-05-24 11:40:07 (1120909): Guest Log: copied the webapp to /var/www
2025-05-24 11:40:07 (1120909): Guest Log: core_number=1
2025-05-24 11:40:08 (1120909): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 11:40:08 (1120909): Guest Log:  *** Starting ATLAS job. (PandaID=6665273642 taskID=44871837) ***
2025-05-24 13:18:27 (1120909): Status Report: Elapsed Time: '6000.000000'
2025-05-24 13:18:27 (1120909): Status Report: CPU Time: '5804.260000'
2025-05-24 14:57:28 (1120909): Status Report: Elapsed Time: '12000.000000'
2025-05-24 14:57:28 (1120909): Status Report: CPU Time: '11753.050000'
2025-05-24 16:36:28 (1120909): Status Report: Elapsed Time: '18000.000000'
2025-05-24 16:36:28 (1120909): Status Report: CPU Time: '17702.120000'
2025-05-24 18:15:29 (1120909): Status Report: Elapsed Time: '24000.000000'
2025-05-24 18:15:29 (1120909): Status Report: CPU Time: '23652.550000'
2025-05-24 19:54:29 (1120909): Status Report: Elapsed Time: '30000.000000'
2025-05-24 19:54:29 (1120909): Status Report: CPU Time: '29601.480000'
2025-05-24 21:33:30 (1120909): Status Report: Elapsed Time: '36000.000000'
2025-05-24 21:33:30 (1120909): Status Report: CPU Time: '35550.490000'
2025-05-24 22:21:17 (1120909): Guest Log:  *** Job finished ***
2025-05-24 22:21:17 (1120909): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:01,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:01,727 | INFO     | [data] copytool_out thread has finished
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:05,467 | INFO     | [data] queue_monitor thread has finished
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:06,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225805936448)>', '<ExcThread(monitor, started 140225355433728)>']
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:06,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:06,611 | INFO     | [monitor] control thread has ended
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,391 | INFO     | all workflow threads have been joined
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,391 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,392 | INFO     | traces error code: 0
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,513 [wrapper] ==== pilot stdout END ====
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,518 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,522 [wrapper] pilotpid: 5774
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:11,527 [wrapper] Pilot exit status: 0
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,546 [wrapper] pandaids: 6665273642
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,586 [wrapper] cleanup supervisor_pilot 19114 5775
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,592 [wrapper] Test setup, not cleaning
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,597 [wrapper] apfmon messages muted
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,602 [wrapper] ==== wrapper stdout END ====
2025-05-24 22:21:17 (1120909): Guest Log: 2025-05-24 20:21:17,607 [wrapper] ==== wrapper stderr END ====
2025-05-24 22:21:17 (1120909): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 22:21:17 (1120909): Guest Log:     "exeErrorCode": 0,
2025-05-24 22:21:17 (1120909): Guest Log:     "exeErrorDiag": "",
2025-05-24 22:21:17 (1120909): Guest Log:     "pilotErrorCode": 0,
2025-05-24 22:21:17 (1120909): Guest Log:     "pilotErrorDiag": "",
2025-05-24 22:21:17 (1120909): Guest Log:  *** Listing of results directory ***
2025-05-24 22:21:17 (1120909): Guest Log: total 207204
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 06:18 pilot3.tar.gz
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 06:21 queuedata.json
2025-05-24 22:21:17 (1120909): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 06:21 runpilot2-wrapper.sh
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas      9817 May 24 09:39 init_data.xml
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas    508873 May 24 09:39 input.tar.gz
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas     15093 May 24 09:39 start_atlas.sh
2025-05-24 22:21:17 (1120909): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 09:39 EVNT.44871834._000304.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May 24 09:40 pandaJob.out
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas    988596 May 24 09:41 agis_schedconf.cvmfs.json
2025-05-24 22:21:17 (1120909): Guest Log: drwx------. 4 atlas atlas      4096 May 24 09:41 pilot3
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas 200827608 May 24 20:19 HITS.44871837._007600.pool.root.1
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas      1022 May 24 20:20 memory_monitor_summary.json
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 20:20 agis_ddmendpoints.agis.ALL.json
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas    510033 May 24 20:20 log.44871837._007600.job.log.tgz.1
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas        95 May 24 20:20 pilot_heartbeat.json
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas      7708 May 24 20:20 heartbeat.json
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas      4536 May 24 20:21 pilotlog.txt
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas   3281709 May 24 20:21 log.44871837._007600.job.log.1
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas       357 May 24 20:21 output.list
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 20:21 runtime_log
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas   3809280 May 24 20:21 result.tar.gz
2025-05-24 22:21:17 (1120909): Guest Log: -rw-r--r--. 1 atlas atlas      8472 May 24 20:21 runtime_log.err
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas       657 May 24 20:21 AZiKDmhRxc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlkLKDmRdNovn.diag
2025-05-24 22:21:17 (1120909): Guest Log: Looking for outputfile HITS.44871837._007600.pool.root.1
2025-05-24 22:21:17 (1120909): Guest Log: HITS file was successfully produced
2025-05-24 22:21:17 (1120909): Guest Log: -rw-------. 1 atlas atlas 200827608 May 24 20:19 /home/atlas/RunAtlas/HITS.44871837._007600.pool.root.1
2025-05-24 22:21:18 (1120909): Guest Log: Successfully finished the ATLAS job!
2025-05-24 22:21:18 (1120909): Guest Log: Copying the results back to the shared directory!
2025-05-24 22:21:18 (1120909): Guest Log:  *** Contents of shared directory: ***
2025-05-24 22:21:18 (1120909): Guest Log: total 220980
2025-05-24 22:21:18 (1120909): Guest Log: -rw-r--r--. 1 root root 221926350 May 24 09:39 ATLAS.root_0
2025-05-24 22:21:18 (1120909): Guest Log: -rw-r--r--. 1 root root      9817 May 24 09:39 init_data.xml
2025-05-24 22:21:18 (1120909): Guest Log: -rw-r--r--. 1 root root    508873 May 24 09:39 input.tar.gz
2025-05-24 22:21:18 (1120909): Guest Log: -rw-r--r--. 1 root root   3809280 May 24 20:21 result.tar.gz
2025-05-24 22:21:18 (1120909): Guest Log: -rw-r--r--. 1 root root     15093 May 24 09:39 start_atlas.sh
2025-05-24 22:21:18 (1120909): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 22:21:18 (1120909): VM Completion File Detected.
2025-05-24 22:21:18 (1120909): Powering off VM.
2025-05-24 22:21:19 (1120909): Successfully stopped VM.
2025-05-24 22:21:19 (1120909): Deregistering VM. (boinc_4244a3e331b06d42, slot#3)
2025-05-24 22:21:19 (1120909): Removing network bandwidth throttle group from VM.
2025-05-24 22:21:19 (1120909): Removing VM from VirtualBox.
22:21:24 (1120909): called boinc_finish(0)

</stderr_txt>
]]>

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