Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 11:39:56 (1122276): Detected: vboxwrapper 26206
2025-05-24 11:39:56 (1122276): Detected: BOINC client v8.2.2
2025-05-24 11:39:56 (1122276): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-05-24 11:39:56 (1122276): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 11:39:56 (1122276): Create VM. (boinc_c63bd09e3ba24e2d, slot#9)
2025-05-24 11:39:56 (1122276): Setting Memory Size for VM. (4096MB)
2025-05-24 11:39:56 (1122276): Setting CPU Count for VM. (1)
2025-05-24 11:39:56 (1122276): Setting Chipset Options for VM.
2025-05-24 11:39:56 (1122276): Setting Graphics Controller Options for VM.
2025-05-24 11:39:57 (1122276): Setting Boot Options for VM.
2025-05-24 11:39:57 (1122276): Setting Network Configuration for NAT.
2025-05-24 11:39:57 (1122276): Enabling VM Network Access.
2025-05-24 11:39:57 (1122276): Disabling USB Support for VM.
2025-05-24 11:39:57 (1122276): Disabling COM Port Support for VM.
2025-05-24 11:39:57 (1122276): Disabling LPT Port Support for VM.
2025-05-24 11:39:57 (1122276): Disabling Audio Support for VM.
2025-05-24 11:39:57 (1122276): Disabling Clipboard Support for VM.
2025-05-24 11:39:57 (1122276): Disabling Drag and Drop Support for VM.
2025-05-24 11:39:57 (1122276): Adding storage controller(s) to VM.
2025-05-24 11:39:57 (1122276): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 11:39:58 (1122276): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 11:39:58 (1122276): forwarding host port 53625 to guest port 80
2025-05-24 11:39:58 (1122276): Enabling remote desktop for VM.
2025-05-24 11:39:58 (1122276): Enabling shared directory for VM.
2025-05-24 11:39:58 (1122276): Starting VM using VBoxManage interface. (boinc_c63bd09e3ba24e2d, slot#9)
2025-05-24 11:39:59 (1122276): Successfully started VM. (PID = '1122664')
2025-05-24 11:39:59 (1122276): Reporting VM Process ID to BOINC.
2025-05-24 11:39:59 (1122276): Guest Log: BIOS: VirtualBox 7.0.20
2025-05-24 11:39:59 (1122276): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 11:39:59 (1122276): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 11:39:59 (1122276): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 11:39:59 (1122276): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 11:39:59 (1122276): Detected: Web Application Enabled (http://localhost:53625)
2025-05-24 11:39:59 (1122276): Detected: Remote Desktop Enabled (localhost:57839)
2025-05-24 11:39:59 (1122276): Preference change detected
2025-05-24 11:39:59 (1122276): Setting CPU throttle for VM. (100%)
2025-05-24 11:40:00 (1122276): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 11:40:01 (1122276): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 11:40:01 (1122276): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 11:40:04 (1122276): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 11:40:04 (1122276): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 11:40:04 (1122276): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 11:40:10 (1122276): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 11:40:10 (1122276): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 11:40:21 (1122276): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000231 main     Log opened 2025-05-24T09:40:18.607295000Z
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000420 main     OS Product: Linux
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000495 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000557 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000630 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000632 main     Process ID: 1236
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.000632 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 11:40:21 (1122276): Guest Log: 00:00:00.003064 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 11:40:21 (1122276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 11:40:21 (1122276): Guest Log: [INFO] Mounting shared directory
2025-05-24 11:40:21 (1122276): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 11:41:22 (1122276): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 11:41:22 (1122276): Guest Log: [INFO] Detected branch: prod
2025-05-24 11:41:22 (1122276): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 11:41:22 (1122276): Guest Log: Copying input files
2025-05-24 11:41:24 (1122276): Guest Log: Copied input files into RunAtlas.
2025-05-24 11:41:24 (1122276): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2025-05-24 11:42:43 (1122276): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 11:42:43 (1122276): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 11:42:43 (1122276): Guest Log: 2.6.3.0 1525 2 31560 146362 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-05-24 11:42:44 (1122276): Guest Log: copied the webapp to /var/www
2025-05-24 11:42:44 (1122276): Guest Log: core_number=1
2025-05-24 11:42:44 (1122276): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 11:42:44 (1122276): Guest Log:  *** Starting ATLAS job. (PandaID=6665278287 taskID=44871837) ***
2025-05-24 13:19:00 (1122276): Status Report: Elapsed Time: '6000.000000'
2025-05-24 13:19:00 (1122276): Status Report: CPU Time: '5676.630000'
2025-05-24 14:58:01 (1122276): Status Report: Elapsed Time: '12000.000000'
2025-05-24 14:58:01 (1122276): Status Report: CPU Time: '11625.370000'
2025-05-24 16:37:01 (1122276): Status Report: Elapsed Time: '18000.000000'
2025-05-24 16:37:01 (1122276): Status Report: CPU Time: '17573.880000'
2025-05-24 18:16:02 (1122276): Status Report: Elapsed Time: '24000.000000'
2025-05-24 18:16:02 (1122276): Status Report: CPU Time: '23523.740000'
2025-05-24 19:55:03 (1122276): Status Report: Elapsed Time: '30000.000000'
2025-05-24 19:55:03 (1122276): Status Report: CPU Time: '29472.460000'
2025-05-24 21:34:03 (1122276): Status Report: Elapsed Time: '36000.000000'
2025-05-24 21:34:03 (1122276): Status Report: CPU Time: '35421.650000'
2025-05-24 23:13:04 (1122276): Status Report: Elapsed Time: '42000.000000'
2025-05-24 23:13:04 (1122276): Status Report: CPU Time: '41371.210000'
2025-05-25 00:41:35 (1122276): Guest Log:  *** Job finished ***
2025-05-25 00:41:35 (1122276): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:24,688 | INFO     | [data] copytool_out thread has finished
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:24,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:28,846 | INFO     | [data] queue_monitor thread has finished
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:28,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853526468416)>', '<ExcThread(monitor, started 139853211604736)>']
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:29,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:29,349 | INFO     | [monitor] control thread has ended
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:33,926 | INFO     | all workflow threads have been joined
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:33,927 | INFO     | end of generic workflow (traces error code: 0)
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:33,927 | INFO     | traces error code: 0
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:33,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,048 [wrapper] ==== pilot stdout END ====
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,054 [wrapper] ==== wrapper stdout RESUME ====
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,058 [wrapper] pilotpid: 5811
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,063 [wrapper] Pilot exit status: 0
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,131 [wrapper] pandaids: 6665278287
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,161 [wrapper] cleanup supervisor_pilot   444 5812
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,166 [wrapper] Test setup, not cleaning
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,171 [wrapper] apfmon messages muted
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,177 [wrapper] ==== wrapper stdout END ====
2025-05-25 00:41:35 (1122276): Guest Log: 2025-05-24 22:41:34,181 [wrapper] ==== wrapper stderr END ====
2025-05-25 00:41:35 (1122276): Guest Log:  *** Error codes and diagnostics ***
2025-05-25 00:41:35 (1122276): Guest Log:     "exeErrorCode": 0,
2025-05-25 00:41:35 (1122276): Guest Log:     "exeErrorDiag": "",
2025-05-25 00:41:35 (1122276): Guest Log:     "pilotErrorCode": 0,
2025-05-25 00:41:35 (1122276): Guest Log:     "pilotErrorDiag": "",
2025-05-25 00:41:35 (1122276): Guest Log:  *** Listing of results directory ***
2025-05-25 00:41:35 (1122276): Guest Log: total 204824
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 07:04 pilot3.tar.gz
2025-05-25 00:41:35 (1122276): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 07:13 runpilot2-wrapper.sh
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 07:13 queuedata.json
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas      9817 May 24 09:41 init_data.xml
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas    508879 May 24 09:41 input.tar.gz
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas     15093 May 24 09:41 start_atlas.sh
2025-05-25 00:41:35 (1122276): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 09:41 EVNT.44871834._000383.pool.root.1 -> /data/./ATLAS.root_0
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May 24 09:42 pandaJob.out
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas    988596 May 24 09:44 agis_schedconf.cvmfs.json
2025-05-25 00:41:35 (1122276): Guest Log: drwx------. 4 atlas atlas      4096 May 24 09:44 pilot3
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas 196844119 May 24 22:39 HITS.44871837._009565.pool.root.1
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas      1021 May 24 22:40 memory_monitor_summary.json
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 22:40 agis_ddmendpoints.agis.ALL.json
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas    573331 May 24 22:40 log.44871837._009565.job.log.tgz.1
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas        95 May 24 22:41 pilot_heartbeat.json
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas      7703 May 24 22:41 heartbeat.json
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas      4413 May 24 22:41 pilotlog.txt
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas   3990776 May 24 22:41 log.44871837._009565.job.log.1
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas       357 May 24 22:41 output.list
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 22:41 runtime_log
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas   4587520 May 24 22:41 result.tar.gz
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 atlas atlas      8472 May 24 22:41 runtime_log.err
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas       657 May 24 22:41 Q52KDmPFyc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN0LKDmykbU6m.diag
2025-05-25 00:41:35 (1122276): Guest Log: Looking for outputfile HITS.44871837._009565.pool.root.1
2025-05-25 00:41:35 (1122276): Guest Log: HITS file was successfully produced
2025-05-25 00:41:35 (1122276): Guest Log: -rw-------. 1 atlas atlas 196844119 May 24 22:39 /home/atlas/RunAtlas/HITS.44871837._009565.pool.root.1
2025-05-25 00:41:35 (1122276): Guest Log: Successfully finished the ATLAS job!
2025-05-25 00:41:35 (1122276): Guest Log: Copying the results back to the shared directory!
2025-05-25 00:41:35 (1122276): Guest Log:  *** Contents of shared directory: ***
2025-05-25 00:41:35 (1122276): Guest Log: total 224528
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 root root 224782174 May 24 09:39 ATLAS.root_0
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 root root      9817 May 24 09:39 init_data.xml
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 root root    508879 May 24 09:39 input.tar.gz
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 root root   4587520 May 24 22:41 result.tar.gz
2025-05-25 00:41:35 (1122276): Guest Log: -rw-r--r--. 1 root root     15093 May 24 09:39 start_atlas.sh
2025-05-25 00:41:35 (1122276): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-25 00:41:35 (1122276): VM Completion File Detected.
2025-05-25 00:41:35 (1122276): Powering off VM.
2025-05-25 00:41:35 (1122276): Successfully stopped VM.
2025-05-25 00:41:35 (1122276): Deregistering VM. (boinc_c63bd09e3ba24e2d, slot#9)
2025-05-25 00:41:35 (1122276): Removing network bandwidth throttle group from VM.
2025-05-25 00:41:35 (1122276): Removing VM from VirtualBox.
00:41:40 (1122276): called boinc_finish(0)

</stderr_txt>
]]>

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