Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 13:57:14 (33304): Detected: vboxwrapper 26206
2025-05-24 13:57:14 (33304): Detected: BOINC client v8.0.2
2025-05-24 13:57:14 (33304): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-24 13:57:15 (33304): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 13:57:15 (33304): Create VM. (boinc_4c45cbf8c2fb85b7, slot#12)
2025-05-24 13:57:16 (33304): Setting Memory Size for VM. (4300MB)
2025-05-24 13:57:16 (33304): Setting CPU Count for VM. (3)
2025-05-24 13:57:16 (33304): Setting Chipset Options for VM.
2025-05-24 13:57:16 (33304): Setting Graphics Controller Options for VM.
2025-05-24 13:57:17 (33304): Setting Boot Options for VM.
2025-05-24 13:57:17 (33304): Setting Network Configuration for NAT.
2025-05-24 13:57:17 (33304): Enabling VM Network Access.
2025-05-24 13:57:18 (33304): Disabling USB Support for VM.
2025-05-24 13:57:18 (33304): Disabling COM Port Support for VM.
2025-05-24 13:57:18 (33304): Disabling LPT Port Support for VM.
2025-05-24 13:57:18 (33304): Disabling Audio Support for VM.
2025-05-24 13:57:19 (33304): Disabling Clipboard Support for VM.
2025-05-24 13:57:19 (33304): Disabling Drag and Drop Support for VM.
2025-05-24 13:57:19 (33304): Adding storage controller(s) to VM.
2025-05-24 13:57:19 (33304): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 13:57:20 (33304): Adding VirtualBox Guest Additions to VM.
2025-05-24 13:57:20 (33304): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 13:57:20 (33304): forwarding host port 50393 to guest port 80
2025-05-24 13:57:21 (33304): Enabling remote desktop for VM.
2025-05-24 13:57:21 (33304): Required extension pack not installed, remote desktop not enabled.
2025-05-24 13:57:21 (33304): Enabling shared directory for VM.
2025-05-24 13:57:21 (33304): Starting VM using VBoxManage interface. (boinc_4c45cbf8c2fb85b7, slot#12)
2025-05-24 13:57:26 (33304): Successfully started VM. (PID = '19368')
2025-05-24 13:57:26 (33304): Reporting VM Process ID to BOINC.
2025-05-24 13:57:26 (33304): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-24 13:57:26 (33304): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 13:57:26 (33304): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 13:57:26 (33304): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 13:57:26 (33304): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 13:57:26 (33304): Detected: Web Application Enabled (http://localhost:50393)
2025-05-24 13:57:26 (33304): Preference change detected
2025-05-24 13:57:26 (33304): Setting CPU throttle for VM. (100%)
2025-05-24 13:57:27 (33304): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 13:57:28 (33304): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 13:57:28 (33304): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 13:57:30 (33304): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 13:57:30 (33304): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 13:57:30 (33304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 13:58:35 (33304): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 13:58:35 (33304): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 13:58:39 (33304): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000097 main     Log opened 2025-05-24T13:58:37.475050000Z
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000182 main     OS Product: Linux
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000198 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000212 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000227 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000227 main     Process ID: 1292
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000227 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 13:58:39 (33304): Guest Log: 00:00:00.000759 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 13:58:39 (33304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 13:58:39 (33304): Guest Log: [INFO] Mounting shared directory
2025-05-24 13:58:39 (33304): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 13:58:45 (33304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 13:58:45 (33304): Guest Log: [INFO] Detected branch: prod
2025-05-24 13:58:46 (33304): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 13:58:46 (33304): Guest Log: Copying input files
2025-05-24 13:58:46 (33304): Guest Log: Copied input files into RunAtlas.
2025-05-24 13:58:46 (33304): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 13:58:46 (33304): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 13:58:46 (33304): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 13:58:46 (33304): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 13:58:49 (33304): Guest Log: 00:00:10.003893 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 190 518 229 000ns (GuestNow=1 748 087 926 958 280 000 ns GuestLast=1 748 095 117 476 509 000 ns fSetTimeLastLoop=true )
2025-05-24 13:59:43 (33304): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 13:59:43 (33304): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 13:59:43 (33304): Guest Log: 2.6.3.0 1567 0 32024 146366 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 13:59:43 (33304): Guest Log: copied the webapp to /var/www
2025-05-24 13:59:43 (33304): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-24 13:59:43 (33304): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-24 13:59:44 (33304): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 13:59:44 (33304): Guest Log:  *** Starting ATLAS job. (PandaID=6665146844 taskID=44871837) ***
2025-05-24 15:37:29 (33304): Status Report: Elapsed Time: '6000.000000'
2025-05-24 15:37:29 (33304): Status Report: CPU Time: '13328.421875'
2025-05-24 17:17:33 (33304): Status Report: Elapsed Time: '12000.000000'
2025-05-24 17:17:33 (33304): Status Report: CPU Time: '31270.906250'
2025-05-24 17:22:42 (33304): Guest Log:  *** Job finished ***
2025-05-24 17:22:42 (33304): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:33,238 | INFO     | [data] queue_monitor thread has finished
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:39,506 | INFO     | job.realtimelogging is not enabled
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:40,512 | INFO     | [payload] run_realtimelog thread has finished
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:42,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626636695360)>', '<ExcThread(monitor, started 139626207495936)>']
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:42,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:42,334 | INFO     | [monitor] control thread has ended
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,179 | INFO     | all workflow threads have been joined
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,179 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,180 | INFO     | traces error code: 0
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,254 [wrapper] ==== pilot stdout END ====
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,257 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,259 [wrapper] pilotpid: 5968
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,261 [wrapper] Pilot exit status: 0
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,515 [wrapper] pandaids: 6665146844
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,533 [wrapper] cleanup supervisor_pilot  9803 5969
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,536 [wrapper] Test setup, not cleaning
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,538 [wrapper] apfmon messages muted
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,541 [wrapper] ==== wrapper stdout END ====
2025-05-24 17:22:42 (33304): Guest Log: 2025-05-24 15:22:47,543 [wrapper] ==== wrapper stderr END ====
2025-05-24 17:22:42 (33304): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 17:22:42 (33304): Guest Log:     "exeErrorCode": 0,
2025-05-24 17:22:42 (33304): Guest Log:     "exeErrorDiag": "",
2025-05-24 17:22:42 (33304): Guest Log:     "pilotErrorCode": 0,
2025-05-24 17:22:42 (33304): Guest Log:     "pilotErrorDiag": "",
2025-05-24 17:22:42 (33304): Guest Log:  *** Listing of results directory ***
2025-05-24 17:22:42 (33304): Guest Log: total 193900
2025-05-24 17:22:42 (33304): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 02:59 pilot3.tar.gz
2025-05-24 17:22:42 (33304): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 04:03 queuedata.json
2025-05-24 17:22:42 (33304): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 04:04 runpilot2-wrapper.sh
2025-05-24 17:22:42 (33304): Guest Log: -rwxr-xr-x. 1 atlas atlas      9093 May 24 11:58 init_data.xml
2025-05-24 17:22:42 (33304): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 May 24 11:58 input.tar.gz
2025-05-24 17:22:42 (33304): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 11:58 start_atlas.sh
2025-05-24 17:22:42 (33304): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 11:58 EVNT.44871834._000048.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 17:22:42 (33304): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May 24 11:59 pandaJob.out
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas    988564 May 24 12:07 agis_schedconf.cvmfs.json
2025-05-24 17:22:42 (33304): Guest Log: drwx------. 4 atlas atlas      4096 May 24 12:08 pilot3
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas 192190414 May 24 15:21 HITS.44871837._001180.pool.root.1
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas      1026 May 24 15:21 memory_monitor_summary.json
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 15:22 agis_ddmendpoints.agis.ALL.json
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas    277802 May 24 15:22 log.44871837._001180.job.log.tgz.1
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas        95 May 24 15:22 pilot_heartbeat.json
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas      7674 May 24 15:22 heartbeat.json
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas      4608 May 24 15:22 pilotlog.txt
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas   1022482 May 24 15:22 log.44871837._001180.job.log.1
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas       357 May 24 15:22 output.list
2025-05-24 17:22:42 (33304): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 15:22 runtime_log
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas   1320960 May 24 15:22 result.tar.gz
2025-05-24 17:22:42 (33304): Guest Log: -rw-r--r--. 1 atlas atlas      8556 May 24 15:22 runtime_log.err
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas       647 May 24 15:22 pwJODmZIvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJxKKDmrPRIRo.diag
2025-05-24 17:22:42 (33304): Guest Log: Looking for outputfile HITS.44871837._001180.pool.root.1
2025-05-24 17:22:42 (33304): Guest Log: HITS file was successfully produced
2025-05-24 17:22:42 (33304): Guest Log: -rw-------. 1 atlas atlas 192190414 May 24 15:21 /home/atlas/RunAtlas/HITS.44871837._001180.pool.root.1
2025-05-24 17:22:42 (33304): Guest Log: Successfully finished the ATLAS job!
2025-05-24 17:22:42 (33304): Guest Log: Copying the results back to the shared directory!
2025-05-24 17:22:42 (33304): Guest Log:  *** Contents of shared directory: ***
2025-05-24 17:22:42 (33304): Guest Log: total 406560
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root 222258202 May 24 11:57 ATLAS.root_0
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root 192190414 May 24 15:22 HITS.pool.root.1
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root      9093 May 24 11:57 init_data.xml
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root    508876 May 24 08:26 input.tar.gz
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root   1320960 May 24 15:22 result.tar.gz
2025-05-24 17:22:42 (33304): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 08:26 start_atlas.sh
2025-05-24 17:22:42 (33304): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 17:22:42 (33304): VM Completion File Detected.
2025-05-24 17:22:42 (33304): Powering off VM.
2025-05-24 17:22:42 (33304): Successfully stopped VM.
2025-05-24 17:22:42 (33304): Deregistering VM. (boinc_4c45cbf8c2fb85b7, slot#12)
2025-05-24 17:22:42 (33304): Removing network bandwidth throttle group from VM.
2025-05-24 17:22:43 (33304): Removing VM from VirtualBox.
17:22:48 (33304): called boinc_finish(0)

</stderr_txt>
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