Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 10:25:36 (13360): Detected: vboxwrapper 26206
2025-05-24 10:25:36 (13360): Detected: BOINC client v8.0.2
2025-05-24 10:25:36 (13360): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-24 10:25:36 (13360): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 10:25:37 (13360): Create VM. (boinc_5841b9daae950f27, slot#15)
2025-05-24 10:25:37 (13360): Setting Memory Size for VM. (4300MB)
2025-05-24 10:25:38 (13360): Setting CPU Count for VM. (3)
2025-05-24 10:25:38 (13360): Setting Chipset Options for VM.
2025-05-24 10:25:38 (13360): Setting Graphics Controller Options for VM.
2025-05-24 10:25:39 (13360): Setting Boot Options for VM.
2025-05-24 10:25:39 (13360): Setting Network Configuration for NAT.
2025-05-24 10:25:39 (13360): Enabling VM Network Access.
2025-05-24 10:25:39 (13360): Disabling USB Support for VM.
2025-05-24 10:25:40 (13360): Disabling COM Port Support for VM.
2025-05-24 10:25:40 (13360): Disabling LPT Port Support for VM.
2025-05-24 10:25:40 (13360): Disabling Audio Support for VM.
2025-05-24 10:25:40 (13360): Disabling Clipboard Support for VM.
2025-05-24 10:25:41 (13360): Disabling Drag and Drop Support for VM.
2025-05-24 10:25:41 (13360): Adding storage controller(s) to VM.
2025-05-24 10:25:41 (13360): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 10:25:42 (13360): Adding VirtualBox Guest Additions to VM.
2025-05-24 10:25:42 (13360): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 10:25:42 (13360): forwarding host port 49238 to guest port 80
2025-05-24 10:25:42 (13360): Enabling remote desktop for VM.
2025-05-24 10:25:43 (13360): Required extension pack not installed, remote desktop not enabled.
2025-05-24 10:25:43 (13360): Enabling shared directory for VM.
2025-05-24 10:25:43 (13360): Starting VM using VBoxManage interface. (boinc_5841b9daae950f27, slot#15)
2025-05-24 10:25:48 (13360): Successfully started VM. (PID = '32184')
2025-05-24 10:25:48 (13360): Reporting VM Process ID to BOINC.
2025-05-24 10:25:48 (13360): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-24 10:25:48 (13360): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 10:25:48 (13360): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 10:25:48 (13360): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 10:25:48 (13360): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 10:25:48 (13360): Detected: Web Application Enabled (http://localhost:49238)
2025-05-24 10:25:48 (13360): Preference change detected
2025-05-24 10:25:48 (13360): Setting CPU throttle for VM. (90%)
2025-05-24 10:25:48 (13360): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 10:25:50 (13360): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 10:25:50 (13360): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 10:25:52 (13360): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 10:25:52 (13360): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 10:25:52 (13360): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 10:26:06 (13360): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 10:26:06 (13360): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 10:26:10 (13360): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000064 main     Log opened 2025-05-24T10:26:07.951120000Z
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000166 main     OS Product: Linux
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000186 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000202 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000217 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000218 main     Process ID: 1292
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000218 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 10:26:10 (13360): Guest Log: 00:00:00.000728 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 10:26:10 (13360): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 10:26:10 (13360): Guest Log: [INFO] Mounting shared directory
2025-05-24 10:26:10 (13360): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 10:26:16 (13360): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 10:26:16 (13360): Guest Log: [INFO] Detected branch: prod
2025-05-24 10:26:17 (13360): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 10:26:17 (13360): Guest Log: Copying input files
2025-05-24 10:26:18 (13360): Guest Log: Copied input files into RunAtlas.
2025-05-24 10:26:18 (13360): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 10:26:18 (13360): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 10:26:18 (13360): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 10:26:18 (13360): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 10:26:20 (13360): Guest Log: 00:00:10.002203 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 198 835 572 000ns (GuestNow=1 748 075 169 117 318 000 ns GuestLast=1 748 082 367 952 890 000 ns fSetTimeLastLoop=true )
2025-05-24 10:26:26 (13360): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 10:26:26 (13360): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 10:26:26 (13360): Guest Log: 2.6.3.0 1567 0 30196 146360 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 10:26:26 (13360): Guest Log: copied the webapp to /var/www
2025-05-24 10:26:26 (13360): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-24 10:26:26 (13360): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-24 10:26:28 (13360): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 10:26:28 (13360): Guest Log:  *** Starting ATLAS job. (PandaID=6665270516 taskID=44871837) ***
2025-05-24 12:05:51 (13360): Status Report: Elapsed Time: '6000.000000'
2025-05-24 12:05:51 (13360): Status Report: CPU Time: '9314.656250'
2025-05-24 12:51:24 (13360): Preference change detected
2025-05-24 12:51:24 (13360): Setting CPU throttle for VM. (100%)
2025-05-24 12:51:24 (13360): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 13:45:54 (13360): Status Report: Elapsed Time: '12000.000000'
2025-05-24 13:45:54 (13360): Status Report: CPU Time: '26390.296875'
2025-05-24 14:39:28 (13360): Guest Log:  *** Job finished ***
2025-05-24 14:39:28 (13360): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:25,940 | INFO     | [job] control thread has finished
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:26,974 | INFO     | [data] copytool_out thread has finished
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:27,813 | INFO     | [data] queue_monitor thread has finished
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:28,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410995738432)>', '<ExcThread(monitor, started 140410047420160)>']
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:28,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:28,405 | INFO     | [monitor] control thread has ended
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,350 | INFO     | all workflow threads have been joined
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,350 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,350 | INFO     | traces error code: 0
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,414 [wrapper] ==== pilot stdout END ====
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,417 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,420 [wrapper] pilotpid: 6040
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,423 [wrapper] Pilot exit status: 0
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,666 [wrapper] pandaids: 6665270516
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,680 [wrapper] cleanup supervisor_pilot 15231 6041
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,682 [wrapper] Test setup, not cleaning
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,685 [wrapper] apfmon messages muted
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,687 [wrapper] ==== wrapper stdout END ====
2025-05-24 14:39:28 (13360): Guest Log: 2025-05-24 12:39:33,690 [wrapper] ==== wrapper stderr END ====
2025-05-24 14:39:28 (13360): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 14:39:28 (13360): Guest Log:     "exeErrorCode": 0,
2025-05-24 14:39:28 (13360): Guest Log:     "exeErrorDiag": "",
2025-05-24 14:39:28 (13360): Guest Log:     "pilotErrorCode": 0,
2025-05-24 14:39:28 (13360): Guest Log:     "pilotErrorDiag": "",
2025-05-24 14:39:28 (13360): Guest Log:  *** Listing of results directory ***
2025-05-24 14:39:28 (13360): Guest Log: total 208388
2025-05-24 14:39:28 (13360): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:59 pilot3.tar.gz
2025-05-24 14:39:28 (13360): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 06:04 runpilot2-wrapper.sh
2025-05-24 14:39:28 (13360): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 06:04 queuedata.json
2025-05-24 14:39:28 (13360): Guest Log: -rwxr-xr-x. 1 atlas atlas      9091 May 24 08:26 init_data.xml
2025-05-24 14:39:28 (13360): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 May 24 08:26 input.tar.gz
2025-05-24 14:39:28 (13360): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 08:26 start_atlas.sh
2025-05-24 14:39:28 (13360): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 08:26 EVNT.44871834._000264.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 14:39:28 (13360): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 24 08:26 pandaJob.out
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas    988612 May 24 08:41 agis_schedconf.cvmfs.json
2025-05-24 14:39:28 (13360): Guest Log: drwx------. 4 atlas atlas      4096 May 24 08:41 pilot3
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas        95 May 24 12:38 pilot_heartbeat.json
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas 206606001 May 24 12:38 HITS.44871837._006587.pool.root.1
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas      1027 May 24 12:39 memory_monitor_summary.json
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 12:39 agis_ddmendpoints.agis.ALL.json
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas    307290 May 24 12:39 log.44871837._006587.job.log.tgz.1
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas      7676 May 24 12:39 heartbeat.json
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas      4413 May 24 12:39 pilotlog.txt
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas   1202645 May 24 12:39 log.44871837._006587.job.log.1
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas       357 May 24 12:39 output.list
2025-05-24 14:39:28 (13360): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 12:39 runtime_log
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas   1525760 May 24 12:39 result.tar.gz
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas       648 May 24 12:39 WbZLDmuAxc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkdLKDmtXKiyn.diag
2025-05-24 14:39:28 (13360): Guest Log: -rw-r--r--. 1 atlas atlas      8556 May 24 12:39 runtime_log.err
2025-05-24 14:39:28 (13360): Guest Log: Looking for outputfile HITS.44871837._006587.pool.root.1
2025-05-24 14:39:28 (13360): Guest Log: HITS file was successfully produced
2025-05-24 14:39:28 (13360): Guest Log: -rw-------. 1 atlas atlas 206606001 May 24 12:38 /home/atlas/RunAtlas/HITS.44871837._006587.pool.root.1
2025-05-24 14:39:28 (13360): Guest Log: Successfully finished the ATLAS job!
2025-05-24 14:39:28 (13360): Guest Log: Copying the results back to the shared directory!
2025-05-24 14:39:29 (13360): Guest Log:  *** Contents of shared directory: ***
2025-05-24 14:39:29 (13360): Guest Log: total 424316
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root 225824142 May 24 08:25 ATLAS.root_0
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root 206606001 May 24 12:39 HITS.pool.root.1
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root      9091 May 24 08:25 init_data.xml
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root    508876 May 24 08:22 input.tar.gz
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root   1525760 May 24 12:39 result.tar.gz
2025-05-24 14:39:29 (13360): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 08:22 start_atlas.sh
2025-05-24 14:39:29 (13360): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 14:39:29 (13360): VM Completion File Detected.
2025-05-24 14:39:29 (13360): Powering off VM.
2025-05-24 14:39:29 (13360): Successfully stopped VM.
2025-05-24 14:39:29 (13360): Deregistering VM. (boinc_5841b9daae950f27, slot#15)
2025-05-24 14:39:30 (13360): Removing network bandwidth throttle group from VM.
2025-05-24 14:39:30 (13360): Removing VM from VirtualBox.
14:39:35 (13360): called boinc_finish(0)

</stderr_txt>
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