Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:00:04 (3036779): wrapper (7.7.26015): starting
21:00:04 (3036779): wrapper: running run_atlas (--nthreads 4)
[2025-05-24 21:00:04] Arguments: --nthreads 4
[2025-05-24 21:00:04] Threads: 4
[2025-05-24 21:00:04] Checking for CVMFS
[2025-05-24 21:00:04] No cvmfs_config command found, will try listing directly
[2025-05-24 21:00:04] CVMFS is ok
[2025-05-24 21:00:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 21:00:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 21:00:04] Further information can be found at the LHC@home message board.
[2025-05-24 21:00:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 21:00:04] Checking for apptainer binary...
[2025-05-24 21:00:04] which: no apptainer in ((null))
[2025-05-24 21:00:04] apptainer is not installed, using version from CVMFS
[2025-05-24 21:00:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 21:00:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-05-24 21:00:04] apptainer works
[2025-05-24 21:00:04] Set ATHENA_PROC_NUMBER=4
[2025-05-24 21:00:04] Set ATHENA_CORE_NUMBER=4
[2025-05-24 21:00:04] Starting ATLAS job with PandaID=6665274900
[2025-05-24 21:00:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-25 00:54:28]  *** The last 200 lines of the pilot log: ***
[2025-05-25 00:54:28] 2025-05-24 22:54:01,416 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/PanDA_Pilot-6665274900/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 00:54:28] 2025-05-24 22:54:02,131 | INFO     | number of running child processes to parent process 3053204: 1
[2025-05-25 00:54:28] 2025-05-24 22:54:02,131 | INFO     | maximum number of monitored processes: 6
[2025-05-25 00:54:28] 2025-05-24 22:54:04,636 | INFO     | monitor loop #951: job 0:6665274900 is in state 'finished'
[2025-05-25 00:54:28] 2025-05-24 22:54:04,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,140 | INFO     | monitor loop #952: job 0:6665274900 is in state 'finished'
[2025-05-25 00:54:28] 2025-05-24 22:54:07,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,773 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-25 00:54:28] 2025-05-24 22:54:07,774 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/PanDA_Pilot-6665274900/memory_monitor_summary.json (trf name=prmon)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,774 | INFO     | extracted standard info from prmon json
[2025-05-25 00:54:28] 2025-05-24 22:54:07,774 | INFO     | extracted standard memory fields from prmon json
[2025-05-25 00:54:28] 2025-05-24 22:54:07,775 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-25 00:54:28] 2025-05-24 22:54:07,775 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-25 00:54:28] 2025-05-24 22:54:07,775 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-25 00:54:28] 2025-05-24 22:54:07,779 | INFO     | fitting pss+swap vs Time
[2025-05-25 00:54:28] 2025-05-24 22:54:07,780 | INFO     | sum of square deviations: 3723716330.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,782 | INFO     | sum of deviations: 40739838078.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,782 | INFO     | mean x: 1748120243.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,782 | INFO     | mean y: 2306857.4934497816
[2025-05-25 00:54:28] 2025-05-24 22:54:07,782 | INFO     | -- intersect: -19123246576.0287
[2025-05-25 00:54:28] 2025-05-24 22:54:07,782 | INFO     | intersect: -19123246576.0287
[2025-05-25 00:54:28] 2025-05-24 22:54:07,783 | INFO     | chi2: 1.4959871509480152
[2025-05-25 00:54:28] 2025-05-24 22:54:07,783 | INFO     | sum of square deviations: 3485088600.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,784 | INFO     | sum of deviations: 39676030072.5
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | mean x: 1748120090.5
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | mean y: 2306177.59375
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | -- intersect: -19899186507.848858
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | intersect: -19899186507.848858
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | chi2: 1.4964466386655066
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | current chi2=1.4964466386655066 (change=-0.03071468342494195 %)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,785 | INFO     | right removable region: 223
[2025-05-25 00:54:28] 2025-05-24 22:54:07,786 | INFO     | sum of square deviations: 3485088600.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | sum of deviations: 7223266505.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | mean x: 1748120395.5
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | mean y: 2328068.0446428573
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | -- intersect: -3620862314.983927
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | intersect: -3620862314.983927
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | chi2: 0.0010981828130363072
[2025-05-25 00:54:28] 2025-05-24 22:54:07,788 | INFO     | current chi2=0.0010981828130363072 (change=99.9265914274504 %)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,789 | INFO     | sum of square deviations: 3256879670.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,790 | INFO     | sum of deviations: 6608704376.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | mean x: 1748120548.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | mean y: 2328476.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | -- intersect: -3544874087.7788205
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | intersect: -3544874087.7788205
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | chi2: 0.0009828261398317753
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | current chi2=0.0009828261398317753 (change=10.504323308938734 %)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,791 | INFO     | left removable region: 20
[2025-05-25 00:54:28] 2025-05-24 22:54:07,792 | INFO     | sum of square deviations: 2593916542.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,793 | INFO     | sum of deviations: 5651591440.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,793 | INFO     | mean x: 1748120670.0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,793 | INFO     | mean y: 2328693.128078818
[2025-05-25 00:54:28] 2025-05-24 22:54:07,793 | INFO     | -- intersect: -3806453761.777544
[2025-05-25 00:54:28] 2025-05-24 22:54:07,793 | INFO     | intersect: -3806453761.777544
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | chi2: 0.0006810911132187009
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | -- intersect: -3806453761.777544
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | current memory leak: 2.18 B/s (using 203 data points, chi2=0.00)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | ..............................
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | . Timing measurements:
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | . get job = 0 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,794 | INFO     | . initial setup = 1 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | . payload setup = 16 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | . stage-in = 0 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | . payload execution = 13955 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | . stage-out = 1 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | . log creation = 0 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,795 | INFO     | ..............................
[2025-05-25 00:54:28] 2025-05-24 22:54:07,896 | INFO     | 
[2025-05-25 00:54:28] 2025-05-24 22:54:07,896 | INFO     | job summary report
[2025-05-25 00:54:28] 2025-05-24 22:54:07,896 | INFO     | --------------------------------------------------
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | PanDA job id: 6665274900
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | task id: 44871837
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | errors: (none)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | pilot state: finished 
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | transexitcode: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | exeerrorcode: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | exeerrordiag: 
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | exitcode: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | exitmsg: OK
[2025-05-25 00:54:28] 2025-05-24 22:54:07,897 | INFO     | cpuconsumptiontime: 53407 s
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | nevents: 400
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | neventsw: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | pid: 3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | pgrp: 3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | corecount: 4
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | event service: False
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | sizes: {0: 2393518, 1: 2393773, 12: 2393773, 13: 2394007, 23: 2394063, 13976: 2425086, 13978: 2434049, 13980: 2434105, 13987: 2434275}
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | --------------------------------------------------
[2025-05-25 00:54:28] 2025-05-24 22:54:07,898 | INFO     | 
[2025-05-25 00:54:28] 2025-05-24 22:54:07,899 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2025-05-25 00:54:28] 2025-05-24 22:54:07,930 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,931 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | job 6665274900 has completed (purged errors)
[2025-05-25 00:54:28] 2025-05-24 22:54:07,932 | INFO     | overall cleanup function is called
[2025-05-25 00:54:28] 2025-05-24 22:54:08,938 | INFO     | --- collectZombieJob: --- 10, [3053204]
[2025-05-25 00:54:28] 2025-05-24 22:54:08,938 | INFO     | zombie collector waiting for pid 3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:08,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-25 00:54:28] 2025-05-24 22:54:08,938 | INFO     | collected zombie processes
[2025-05-25 00:54:28] 2025-05-24 22:54:08,938 | INFO     | will attempt to kill all subprocesses of pid=3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:09,659 | INFO     | process IDs to be killed: [3053204] (in reverse order)
[2025-05-25 00:54:28] 2025-05-24 22:54:09,952 | WARNING  | found no corresponding commands to process id(s)
[2025-05-25 00:54:28] 2025-05-24 22:54:09,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-25 00:54:28] 2025-05-24 22:54:09,977 | INFO     | did not find any defunct processes belonging to 3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:09,997 | INFO     | did not find any defunct processes belonging to 3053204
[2025-05-25 00:54:28] 2025-05-24 22:54:09,997 | INFO     | ready for new job
[2025-05-25 00:54:28] 2025-05-24 22:54:09,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-25 00:54:28] 2025-05-24 22:54:09,999 | INFO     | **************************************
[2025-05-25 00:54:28] 2025-05-24 22:54:10,000 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-25 00:54:28] 2025-05-24 22:54:10,000 | INFO     | **************************************
[2025-05-25 00:54:28] 2025-05-24 22:54:10,000 | INFO     | 
[2025-05-25 00:54:28] 2025-05-24 22:54:10,008 | INFO     | architecture information:
[2025-05-25 00:54:28] 2025-05-24 22:54:10,008 | INFO     | executing command: cat /etc/os-release
[2025-05-25 00:54:28] 2025-05-24 22:54:10,030 | INFO     | cat /etc/os-release:
[2025-05-25 00:54:28] NAME="CentOS Linux"
[2025-05-25 00:54:28] VERSION="7 (Core)"
[2025-05-25 00:54:28] ID="centos"
[2025-05-25 00:54:28] ID_LIKE="rhel fedora"
[2025-05-25 00:54:28] VERSION_ID="7"
[2025-05-25 00:54:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-25 00:54:28] ANSI_COLOR="0;31"
[2025-05-25 00:54:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-25 00:54:28] HOME_URL="https://www.centos.org/"
[2025-05-25 00:54:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-25 00:54:28] 
[2025-05-25 00:54:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-25 00:54:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-25 00:54:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-25 00:54:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-25 00:54:28] 
[2025-05-25 00:54:28] 2025-05-24 22:54:10,030 | INFO     | **************************************
[2025-05-25 00:54:28] 2025-05-24 22:54:10,534 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2025-05-25 00:54:28] 2025-05-24 22:54:10,557 | INFO     | sufficient remaining disk space (3307039883264 B)
[2025-05-25 00:54:28] 2025-05-24 22:54:10,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-25 00:54:28] 2025-05-24 22:54:10,557 | INFO     | current server update state: UPDATING_FINAL
[2025-05-25 00:54:28] 2025-05-24 22:54:10,557 | INFO     | update_server=False
[2025-05-25 00:54:28] 2025-05-24 22:54:10,557 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-25 00:54:28] 2025-05-24 22:54:10,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-25 00:54:28] 2025-05-24 22:54:10,649 | INFO     | aborting loop
[2025-05-25 00:54:28] 2025-05-24 22:54:11,025 | INFO     | all job control threads have been joined
[2025-05-25 00:54:28] 2025-05-24 22:54:11,025 | INFO     | all payload control threads have been joined
[2025-05-25 00:54:28] 2025-05-24 22:54:11,036 | INFO     | found 0 job(s) in 20 queues
[2025-05-25 00:54:28] 2025-05-24 22:54:11,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-25 00:54:28] 2025-05-24 22:54:11,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-25 00:54:28] 2025-05-24 22:54:11,126 | INFO     | all data control threads have been joined
[2025-05-25 00:54:28] 2025-05-24 22:54:11,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-25 00:54:28] 2025-05-24 22:54:11,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-25 00:54:28] 2025-05-24 22:54:11,562 | INFO     | [job] retrieve thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:11,653 | INFO     | [job] job monitor thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:11,705 | INFO     | [payload] validate_post thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,030 | INFO     | [job] control thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,031 | INFO     | [payload] control thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,057 | INFO     | [payload] validate_pre thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,130 | INFO     | [data] control thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,153 | INFO     | [data] copytool_in thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,185 | INFO     | [payload] execute_payloads thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,460 | INFO     | [job] create_data_payload thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,559 | INFO     | [job] validate thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,723 | INFO     | [payload] failed_post thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:12,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-25 00:54:28] 2025-05-24 22:54:13,227 | INFO     | [data] copytool_out thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:13,910 | INFO     | [job] queue monitor thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:15,523 | INFO     | [data] queue_monitor thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:21,599 | INFO     | job.realtimelogging is not enabled
[2025-05-25 00:54:28] 2025-05-24 22:54:22,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-25 00:54:28] 2025-05-24 22:54:23,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23303448127296)>', '<ExcThread(monitor, started 23303005644544)>']
[2025-05-25 00:54:28] 2025-05-24 22:54:24,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-25 00:54:28] 2025-05-24 22:54:24,103 | INFO     | [monitor] control thread has ended
[2025-05-25 00:54:28] 2025-05-24 22:54:28,304 | INFO     | all workflow threads have been joined
[2025-05-25 00:54:28] 2025-05-24 22:54:28,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-25 00:54:28] 2025-05-24 22:54:28,305 | INFO     | traces error code: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:28,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-25 00:54:28] 2025-05-24 22:54:28,439 [wrapper] ==== pilot stdout END ====
[2025-05-25 00:54:28] 2025-05-24 22:54:28,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-25 00:54:28] 2025-05-24 22:54:28,448 [wrapper] pilotpid: 3043497
[2025-05-25 00:54:28] 2025-05-24 22:54:28,452 [wrapper] Pilot exit status: 0
[2025-05-25 00:54:28] 2025-05-24 22:54:28,469 [wrapper] pandaids: 6665274900
[2025-05-25 00:54:28] 2025-05-24 22:54:28,623 [wrapper] cleanup supervisor_pilot  127366 3043498
[2025-05-25 00:54:28] 2025-05-24 22:54:28,628 [wrapper] Test setup, not cleaning
[2025-05-25 00:54:28] 2025-05-24 22:54:28,632 [wrapper] apfmon messages muted
[2025-05-25 00:54:28] 2025-05-24 22:54:28,636 [wrapper] ==== wrapper stdout END ====
[2025-05-25 00:54:28] 2025-05-24 22:54:28,639 [wrapper] ==== wrapper stderr END ====
[2025-05-25 00:54:28]  *** Error codes and diagnostics ***
[2025-05-25 00:54:28]     "exeErrorCode": 0,
[2025-05-25 00:54:28]     "exeErrorDiag": "",
[2025-05-25 00:54:28]     "pilotErrorCode": 0,
[2025-05-25 00:54:28]     "pilotErrorDiag": "",
[2025-05-25 00:54:28]  *** Listing of results directory ***
[2025-05-25 00:54:28] total 428624
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc    495897 May 24 08:34 pilot3.tar.gz
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc      5111 May 24 08:42 queuedata.json
[2025-05-25 00:54:28] -rwx------ 1 boinc boinc     37140 May 24 08:42 runpilot2-wrapper.sh
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc       100 May 24 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-25 00:54:28] -rwxr-xr-x 1 boinc boinc      7986 May 24 20:59 run_atlas
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc       105 May 24 20:59 job.xml
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc 224246811 May 24 21:00 EVNT.44871834._000326.pool.root.1
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc      6676 May 24 21:00 init_data.xml
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc    508872 May 24 21:00 input.tar.gz
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc     15093 May 24 21:00 start_atlas.sh
[2025-05-25 00:54:28] drwxrwx--x 2 boinc boinc      4096 May 24 21:00 shared
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc         0 May 24 21:00 boinc_lockfile
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc      2555 May 24 21:00 pandaJob.out
[2025-05-25 00:54:28] -rw------- 1 boinc boinc    988572 May 24 21:00 agis_schedconf.cvmfs.json
[2025-05-25 00:54:28] drwx------ 4 boinc boinc      4096 May 24 21:00 pilot3
[2025-05-25 00:54:28] -rw------- 1 boinc boinc 207633025 May 25 00:53 HITS.44871837._008136.pool.root.1
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc       531 May 25 00:53 boinc_task_state.xml
[2025-05-25 00:54:28] -rw------- 1 boinc boinc        95 May 25 00:53 pilot_heartbeat.json
[2025-05-25 00:54:28] -rw------- 1 boinc boinc      1026 May 25 00:53 memory_monitor_summary.json
[2025-05-25 00:54:28] -rw------- 1 boinc boinc   1596740 May 25 00:53 agis_ddmendpoints.agis.ALL.json
[2025-05-25 00:54:28] -rw------- 1 boinc boinc    330697 May 25 00:53 log.44871837._008136.job.log.tgz.1
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc      8192 May 25 00:54 boinc_mmap_file
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc        28 May 25 00:54 wrapper_checkpoint.txt
[2025-05-25 00:54:28] -rw------- 1 boinc boinc      7697 May 25 00:54 heartbeat.json
[2025-05-25 00:54:28] -rw------- 1 boinc boinc      4436 May 25 00:54 pilotlog.txt
[2025-05-25 00:54:28] -rw------- 1 boinc boinc   1269930 May 25 00:54 log.44871837._008136.job.log.1
[2025-05-25 00:54:28] -rw------- 1 boinc boinc       357 May 25 00:54 output.list
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc       620 May 25 00:54 runtime_log
[2025-05-25 00:54:28] -rw------- 1 boinc boinc   1617920 May 25 00:54 result.tar.gz
[2025-05-25 00:54:28] -rw------- 1 boinc boinc       666 May 25 00:54 w6jKDmjlxc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfzPKDmESoEPm.diag
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc      9026 May 25 00:54 runtime_log.err
[2025-05-25 00:54:28] -rw-r--r-- 1 boinc boinc     20869 May 25 00:54 stderr.txt
[2025-05-25 00:54:28] HITS file was successfully produced:
[2025-05-25 00:54:28] -rw------- 1 boinc boinc 207633025 May 25 00:53 shared/HITS.pool.root.1
[2025-05-25 00:54:28]  *** Contents of shared directory: ***
[2025-05-25 00:54:28] total 423864
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc 224246811 May 24 21:00 ATLAS.root_0
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc    508872 May 24 21:00 input.tar.gz
[2025-05-25 00:54:28] -rw-r--r-- 2 boinc boinc     15093 May 24 21:00 start_atlas.sh
[2025-05-25 00:54:28] -rw------- 1 boinc boinc 207633025 May 25 00:53 HITS.pool.root.1
[2025-05-25 00:54:28] -rw------- 1 boinc boinc   1617920 May 25 00:54 result.tar.gz
00:54:30 (3036779): run_atlas exited; CPU time 54213.857180
00:54:30 (3036779): called boinc_finish(0)

</stderr_txt>
]]>

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