Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 03:36:12 (25392): Detected: vboxwrapper 26206
2025-05-24 03:36:12 (25392): Detected: BOINC client v8.0.2
2025-05-24 03:36:13 (25392): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-05-24 03:36:13 (25392): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 03:36:14 (25392): Create VM. (boinc_54a4d5c0c2adbb84, slot#0)
2025-05-24 03:36:14 (25392): Setting Memory Size for VM. (4400MB)
2025-05-24 03:36:14 (25392): Setting CPU Count for VM. (4)
2025-05-24 03:36:15 (25392): Setting Chipset Options for VM.
2025-05-24 03:36:15 (25392): Setting Graphics Controller Options for VM.
2025-05-24 03:36:15 (25392): Setting Boot Options for VM.
2025-05-24 03:36:16 (25392): Setting Network Configuration for NAT.
2025-05-24 03:36:16 (25392): Enabling VM Network Access.
2025-05-24 03:36:16 (25392): Disabling USB Support for VM.
2025-05-24 03:36:16 (25392): Disabling COM Port Support for VM.
2025-05-24 03:36:17 (25392): Disabling LPT Port Support for VM.
2025-05-24 03:36:17 (25392): Disabling Audio Support for VM.
2025-05-24 03:36:17 (25392): Disabling Clipboard Support for VM.
2025-05-24 03:36:17 (25392): Disabling Drag and Drop Support for VM.
2025-05-24 03:36:18 (25392): Adding storage controller(s) to VM.
2025-05-24 03:36:18 (25392): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 03:36:21 (25392): Adding VirtualBox Guest Additions to VM.
2025-05-24 03:36:21 (25392): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 03:36:21 (25392): forwarding host port 61583 to guest port 80
2025-05-24 03:36:22 (25392): Enabling remote desktop for VM.
2025-05-24 03:36:22 (25392): Required extension pack not installed, remote desktop not enabled.
2025-05-24 03:36:22 (25392): Enabling shared directory for VM.
2025-05-24 03:36:22 (25392): Starting VM using VBoxManage interface. (boinc_54a4d5c0c2adbb84, slot#0)
2025-05-24 03:36:29 (25392): Successfully started VM. (PID = '4812')
2025-05-24 03:36:29 (25392): Reporting VM Process ID to BOINC.
2025-05-24 03:36:29 (25392): Guest Log: BIOS: VirtualBox 7.1.4
2025-05-24 03:36:29 (25392): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 03:36:29 (25392): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 03:36:29 (25392): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 03:36:29 (25392): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 03:36:29 (25392): Detected: Web Application Enabled (http://localhost:61583)
2025-05-24 03:36:29 (25392): Preference change detected
2025-05-24 03:36:29 (25392): Setting CPU throttle for VM. (90%)
2025-05-24 03:36:29 (25392): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 03:36:31 (25392): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 03:36:31 (25392): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 03:36:34 (25392): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 03:36:34 (25392): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 03:36:34 (25392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 03:36:37 (25392): VM state change detected. (old = 'running', new = 'paused')
2025-05-24 03:36:57 (25392): VM state change detected. (old = 'paused', new = 'running')
2025-05-24 03:36:59 (25392): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 03:36:59 (25392): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 03:37:03 (25392): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000072 main     Log opened 2025-05-24T03:36:41.582714000Z
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000137 main     OS Product: Linux
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000163 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000184 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000205 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000205 main     Process ID: 1311
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000206 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 03:37:03 (25392): Guest Log: 00:00:00.000877 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 03:37:03 (25392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 03:37:03 (25392): Guest Log: [INFO] Mounting shared directory
2025-05-24 03:37:03 (25392): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 03:37:08 (25392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 03:37:08 (25392): Guest Log: [INFO] Detected branch: prod
2025-05-24 03:37:08 (25392): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 03:37:08 (25392): Guest Log: Copying input files
2025-05-24 03:37:10 (25392): Guest Log: Copied input files into RunAtlas.
2025-05-24 03:37:10 (25392): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 03:37:10 (25392): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 03:37:10 (25392): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 03:37:10 (25392): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 03:37:13 (25392): Guest Log: 00:00:10.003726 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 431 301 796 000ns (GuestNow=1 748 072 232 887 046 000 ns GuestLast=1 748 057 801 585 250 000 ns fSetTimeLastLoop=true )
2025-05-24 03:37:19 (25392): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 03:37:19 (25392): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 03:37:19 (25392): Guest Log: 2.6.3.0 1589 0 32128 146359 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 03:37:20 (25392): Guest Log: copied the webapp to /var/www
2025-05-24 03:37:20 (25392): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-24 03:37:20 (25392): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-24 03:37:20 (25392): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 03:37:20 (25392): Guest Log:  *** Starting ATLAS job. (PandaID=6665206601 taskID=44871837) ***
2025-05-24 04:35:50 (25392): VM state change detected. (old = 'running', new = 'paused')
2025-05-24 04:36:10 (25392): VM state change detected. (old = 'paused', new = 'running')
2025-05-24 05:17:15 (25392): Status Report: Elapsed Time: '6000.000000'
2025-05-24 05:17:15 (25392): Status Report: CPU Time: '20373.156250'
2025-05-24 05:36:04 (25392): VM state change detected. (old = 'running', new = 'paused')
2025-05-24 05:36:24 (25392): VM state change detected. (old = 'paused', new = 'running')
2025-05-24 05:40:37 (25392): Guest Log:  *** Job finished ***
2025-05-24 05:40:37 (25392): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:47,117 | INFO     | [data] queue_monitor thread has finished
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:50,753 | INFO     | job.realtimelogging is not enabled
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:51,756 | INFO     | [payload] run_realtimelog thread has finished
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:53,562 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546458269504)>', '<ExcThread(monitor, started 140545892546304)>']
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:54,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:54,426 | INFO     | [monitor] control thread has ended
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,575 | INFO     | all workflow threads have been joined
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,575 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,575 | INFO     | traces error code: 0
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,575 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,631 [wrapper] ==== pilot stdout END ====
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,634 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,637 [wrapper] pilotpid: 5901
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,639 [wrapper] Pilot exit status: 0
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,759 [wrapper] pandaids: 6665206601
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,777 [wrapper] cleanup supervisor_pilot  4913 5902
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,780 [wrapper] Test setup, not cleaning
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,783 [wrapper] apfmon messages muted
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,786 [wrapper] ==== wrapper stdout END ====
2025-05-24 05:40:37 (25392): Guest Log: 2025-05-24 09:39:58,789 [wrapper] ==== wrapper stderr END ====
2025-05-24 05:40:37 (25392): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 05:40:37 (25392): Guest Log:     "exeErrorCode": 0,
2025-05-24 05:40:37 (25392): Guest Log:     "exeErrorDiag": "",
2025-05-24 05:40:37 (25392): Guest Log:     "pilotErrorCode": 0,
2025-05-24 05:40:37 (25392): Guest Log:     "pilotErrorDiag": "",
2025-05-24 05:40:37 (25392): Guest Log:  *** Listing of results directory ***
2025-05-24 05:40:37 (25392): Guest Log: total 204412
2025-05-24 05:40:37 (25392): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:01 pilot3.tar.gz
2025-05-24 05:40:37 (25392): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 05:04 runpilot2-wrapper.sh
2025-05-24 05:40:37 (25392): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 05:05 queuedata.json
2025-05-24 05:40:37 (25392): Guest Log: -rwxr-xr-x. 1 atlas atlas     12241 May 24 07:37 init_data.xml
2025-05-24 05:40:37 (25392): Guest Log: -rwxr-xr-x. 1 atlas atlas    508867 May 24 07:37 input.tar.gz
2025-05-24 05:40:37 (25392): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 07:37 start_atlas.sh
2025-05-24 05:40:37 (25392): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 07:37 EVNT.44871834._000146.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 05:40:37 (25392): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 24 07:37 pandaJob.out
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas    988604 May 24 07:38 agis_schedconf.cvmfs.json
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 07:38 agis_ddmendpoints.agis.ALL.json
2025-05-24 05:40:37 (25392): Guest Log: drwx------. 4 atlas atlas      4096 May 24 07:38 pilot3
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas 203765706 May 24 09:38 HITS.44871837._003641.pool.root.1
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas      1029 May 24 09:38 memory_monitor_summary.json
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas    265161 May 24 09:38 log.44871837._003641.job.log.tgz.1
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas        95 May 24 09:39 pilot_heartbeat.json
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas      7678 May 24 09:39 heartbeat.json
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas      4485 May 24 09:39 pilotlog.txt
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas    632238 May 24 09:39 log.44871837._003641.job.log.1
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas       357 May 24 09:39 output.list
2025-05-24 05:40:37 (25392): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 09:39 runtime_log
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas    911360 May 24 09:39 result.tar.gz
2025-05-24 05:40:37 (25392): Guest Log: -rw-r--r--. 1 atlas atlas      8591 May 24 09:39 runtime_log.err
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas       656 May 24 09:39 1YuLDmeEwc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPRPKDm0AmFVo.diag
2025-05-24 05:40:37 (25392): Guest Log: Looking for outputfile HITS.44871837._003641.pool.root.1
2025-05-24 05:40:37 (25392): Guest Log: HITS file was successfully produced
2025-05-24 05:40:37 (25392): Guest Log: -rw-------. 1 atlas atlas 203765706 May 24 09:38 /home/atlas/RunAtlas/HITS.44871837._003641.pool.root.1
2025-05-24 05:40:38 (25392): Guest Log: Successfully finished the ATLAS job!
2025-05-24 05:40:38 (25392): Guest Log: Copying the results back to the shared directory!
2025-05-24 05:40:38 (25392): Guest Log:  *** Contents of shared directory: ***
2025-05-24 05:40:38 (25392): Guest Log: total 422732
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root 227652287 May 24 07:36 ATLAS.root_0
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root 203765706 May 24  2025 HITS.pool.root.1
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root     12241 May 24 07:36 init_data.xml
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root    508867 May 24 07:35 input.tar.gz
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root    911360 May 24  2025 result.tar.gz
2025-05-24 05:40:38 (25392): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 07:35 start_atlas.sh
2025-05-24 05:40:38 (25392): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 05:40:38 (25392): VM Completion File Detected.
2025-05-24 05:40:38 (25392): Powering off VM.
2025-05-24 05:40:39 (25392): Successfully stopped VM.
2025-05-24 05:40:39 (25392): Deregistering VM. (boinc_54a4d5c0c2adbb84, slot#0)
2025-05-24 05:40:39 (25392): Removing network bandwidth throttle group from VM.
2025-05-24 05:40:39 (25392): Removing VM from VirtualBox.
05:40:44 (25392): called boinc_finish(0)

</stderr_txt>
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