Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:12 (15657): wrapper (7.7.26015): starting
10:02:12 (15657): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 10:02:12] Arguments: --nthreads 8
[2025-05-24 10:02:12] Threads: 8
[2025-05-24 10:02:12] Checking for CVMFS
[2025-05-24 10:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 10:02:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 10:02:13] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 10:02:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 10:02:14] 2.11.2.0 9407 17090 92048 146359 1 129 17249013 25165825 2517 130560 0 8952502 99.749 12523334 1864 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-24 10:02:14] CVMFS is ok
[2025-05-24 10:02:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 10:02:14] Checking for apptainer binary...
[2025-05-24 10:02:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 10:02:14] Running /usr/bin/apptainer --version
[2025-05-24 10:02:14] apptainer version 1.3.2-1.el7
[2025-05-24 10:02:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 10:02:17] cg-vwn416.simple-grid.lan
[2025-05-24 10:02:17] apptainer works
[2025-05-24 10:02:17] Set ATHENA_PROC_NUMBER=8
[2025-05-24 10:02:17] Set ATHENA_CORE_NUMBER=8
[2025-05-24 10:02:17] Starting ATLAS job with PandaID=6665205887
[2025-05-24 10:02:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 16:48:31]  *** The last 200 lines of the pilot log: ***
[2025-05-24 16:48:31] 2025-05-24 13:14:54,773 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 16:48:31] 2025-05-24 13:14:54,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 16:48:31] 2025-05-24 13:14:54,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 16:48:31] 2025-05-24 13:14:54,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 16:48:31] 2025-05-24 13:14:54,779 | INFO     | fitting pss+swap vs Time
[2025-05-24 16:48:31] 2025-05-24 13:14:54,780 | INFO     | sum of square deviations: 8797783560.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,786 | INFO     | sum of deviations: 58314649460.00006
[2025-05-24 16:48:31] 2025-05-24 13:14:54,786 | INFO     | mean x: 1748083076.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,786 | INFO     | mean y: 2477466.662295082
[2025-05-24 16:48:31] 2025-05-24 13:14:54,786 | INFO     | -- intersect: -11584401331.694805
[2025-05-24 16:48:31] 2025-05-24 13:14:54,787 | INFO     | intersect: -11584401331.694805
[2025-05-24 16:48:31] 2025-05-24 13:14:54,787 | INFO     | chi2: 2.771111820990022
[2025-05-24 16:48:31] 2025-05-24 13:14:54,788 | INFO     | sum of square deviations: 8372156975.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,791 | INFO     | sum of deviations: 78406623493.49998
[2025-05-24 16:48:31] 2025-05-24 13:14:54,791 | INFO     | mean x: 1748082923.5
[2025-05-24 16:48:31] 2025-05-24 13:14:54,791 | INFO     | mean y: 2484564.0233333334
[2025-05-24 16:48:31] 2025-05-24 13:14:54,791 | INFO     | -- intersect: -16368598781.3509
[2025-05-24 16:48:31] 2025-05-24 13:14:54,791 | INFO     | intersect: -16368598781.3509
[2025-05-24 16:48:31] 2025-05-24 13:14:54,792 | INFO     | chi2: 1.9199150466536803
[2025-05-24 16:48:31] 2025-05-24 13:14:54,792 | INFO     | current chi2=1.9199150466536803 (change=30.716796337444034 %)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,792 | INFO     | sum of square deviations: 7960484140.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,795 | INFO     | sum of deviations: 76831720095.00002
[2025-05-24 16:48:31] 2025-05-24 13:14:54,795 | INFO     | mean x: 1748082771.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,795 | INFO     | mean y: 2483980.6169491527
[2025-05-24 16:48:31] 2025-05-24 13:14:54,795 | INFO     | -- intersect: -16869380067.1348
[2025-05-24 16:48:31] 2025-05-24 13:14:54,795 | INFO     | intersect: -16869380067.1348
[2025-05-24 16:48:31] 2025-05-24 13:14:54,796 | INFO     | chi2: 1.9202358762866447
[2025-05-24 16:48:31] 2025-05-24 13:14:54,799 | INFO     | current chi2=1.9202358762866447 (change=-0.01671061610374981 %)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,799 | INFO     | right removable region: 294
[2025-05-24 16:48:31] 2025-05-24 13:14:54,800 | INFO     | sum of square deviations: 8372156975.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,803 | INFO     | sum of deviations: -1396792456.9999962
[2025-05-24 16:48:31] 2025-05-24 13:14:54,803 | INFO     | mean x: 1748083228.5
[2025-05-24 16:48:31] 2025-05-24 13:14:54,803 | INFO     | mean y: 2498745.22
[2025-05-24 16:48:31] 2025-05-24 13:14:54,803 | INFO     | -- intersect: 294145148.29965574
[2025-05-24 16:48:31] 2025-05-24 13:14:54,803 | INFO     | intersect: 294145148.29965574
[2025-05-24 16:48:31] 2025-05-24 13:14:54,804 | INFO     | chi2: 0.9294540531152108
[2025-05-24 16:48:31] 2025-05-24 13:14:54,804 | INFO     | current chi2=0.9294540531152108 (change=66.45916465459885 %)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,804 | INFO     | sum of square deviations: 7960484140.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,807 | INFO     | sum of deviations: -6197996865.999996
[2025-05-24 16:48:31] 2025-05-24 13:14:54,807 | INFO     | mean x: 1748083381.0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | mean y: 2500498.3254237287
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | -- intersect: 1363550294.5938046
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | intersect: 1363550294.5938046
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | chi2: 0.8997694022730305
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | current chi2=0.8997694022730305 (change=3.193772811328064 %)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,808 | INFO     | left removable region: 20
[2025-05-24 16:48:31] 2025-05-24 13:14:54,809 | INFO     | sum of square deviations: 6378584712.5
[2025-05-24 16:48:31] 2025-05-24 13:14:54,814 | INFO     | sum of deviations: 15214743311.499998
[2025-05-24 16:48:31] 2025-05-24 13:14:54,815 | INFO     | mean x: 1748083350.5
[2025-05-24 16:48:31] 2025-05-24 13:14:54,815 | INFO     | mean y: 2507451.8649635036
[2025-05-24 16:48:31] 2025-05-24 13:14:54,815 | INFO     | -- intersect: -4167169782.7798033
[2025-05-24 16:48:31] 2025-05-24 13:14:54,815 | INFO     | intersect: -4167169782.7798033
[2025-05-24 16:48:31] 2025-05-24 13:14:54,816 | INFO     | chi2: 0.0030988104913251737
[2025-05-24 16:48:31] 2025-05-24 13:14:54,816 | INFO     | -- intersect: -4167169782.7798033
[2025-05-24 16:48:31] 2025-05-24 13:14:54,816 | INFO     | current memory leak: 2.39 B/s (using 274 data points, chi2=0.00)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,817 | INFO     | ..............................
[2025-05-24 16:48:31] 2025-05-24 13:14:54,817 | INFO     | . Timing measurements:
[2025-05-24 16:48:31] 2025-05-24 13:14:54,817 | INFO     | . get job = 0 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,817 | INFO     | . initial setup = 2 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,817 | INFO     | . payload setup = 13 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,819 | INFO     | . stage-in = 0 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,819 | INFO     | . payload execution = 18616 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,819 | INFO     | . stage-out = 3 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,819 | INFO     | . log creation = 1 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,819 | INFO     | ..............................
[2025-05-24 16:48:31] 2025-05-24 13:14:54,967 | INFO     | 
[2025-05-24 16:48:31] 2025-05-24 13:14:54,967 | INFO     | job summary report
[2025-05-24 16:48:31] 2025-05-24 13:14:54,967 | INFO     | --------------------------------------------------
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | PanDA job id: 6665205887
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | task id: 44871837
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | errors: (none)
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | pilot state: finished 
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | transexitcode: 0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | exeerrorcode: 0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | exeerrordiag: 
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | exitcode: 0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | exitmsg: OK
[2025-05-24 16:48:31] 2025-05-24 13:14:54,968 | INFO     | cpuconsumptiontime: 71529 s
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | nevents: 400
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | neventsw: 0
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | pid: 28242
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | pgrp: 28242
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | corecount: 8
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | event service: False
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | sizes: {0: 2393565, 1: 2393764, 11: 2393998, 18633: 2425838, 18636: 2434779, 18640: 2434835, 18721: 2435133}
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | --------------------------------------------------
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | 
[2025-05-24 16:48:31] 2025-05-24 13:14:54,969 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-05-24 16:48:31] 2025-05-24 13:14:55,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,563 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,563 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 16:48:31] 2025-05-24 13:14:55,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,566 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 16:48:31] 2025-05-24 13:14:55,566 | INFO     | job 6665205887 has completed (purged errors)
[2025-05-24 16:48:31] 2025-05-24 13:14:55,566 | INFO     | overall cleanup function is called
[2025-05-24 16:48:31] 2025-05-24 13:14:56,575 | INFO     | --- collectZombieJob: --- 10, [28242]
[2025-05-24 16:48:31] 2025-05-24 13:14:56,575 | INFO     | zombie collector waiting for pid 28242
[2025-05-24 16:48:31] 2025-05-24 13:14:56,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 16:48:31] 2025-05-24 13:14:56,576 | INFO     | collected zombie processes
[2025-05-24 16:48:31] 2025-05-24 13:14:56,576 | INFO     | will attempt to kill all subprocesses of pid=28242
[2025-05-24 16:48:31] 2025-05-24 13:14:56,677 | INFO     | process IDs to be killed: [28242] (in reverse order)
[2025-05-24 16:48:31] 2025-05-24 13:14:56,983 | INFO     | PID=19656 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-24 16:48:31] 2025-05-24 13:14:56,983 | INFO     | .. there are 9 such processes running
[2025-05-24 16:48:31] 2025-05-24 13:14:57,616 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 16:48:31] 2025-05-24 13:14:57,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 16:48:31] 2025-05-24 13:14:57,619 | INFO     | did not find any defunct processes belonging to 28242
[2025-05-24 16:48:31] 2025-05-24 13:14:57,622 | INFO     | did not find any defunct processes belonging to 28242
[2025-05-24 16:48:31] 2025-05-24 13:14:57,622 | INFO     | ready for new job
[2025-05-24 16:48:31] 2025-05-24 13:14:57,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 16:48:31] 2025-05-24 13:14:57,624 | INFO     | **************************************
[2025-05-24 16:48:31] 2025-05-24 13:14:57,624 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 16:48:31] 2025-05-24 13:14:57,624 | INFO     | **************************************
[2025-05-24 16:48:31] 2025-05-24 13:14:57,624 | INFO     | 
[2025-05-24 16:48:31] 2025-05-24 13:14:57,625 | INFO     | pilot is running in a VM
[2025-05-24 16:48:31] 2025-05-24 13:14:57,625 | INFO     | architecture information:
[2025-05-24 16:48:31] 2025-05-24 13:14:57,639 | INFO     | executing command: cat /etc/os-release
[2025-05-24 16:48:31] 2025-05-24 13:14:57,876 | INFO     | cat /etc/os-release:
[2025-05-24 16:48:31] NAME="CentOS Linux"
[2025-05-24 16:48:31] VERSION="7 (Core)"
[2025-05-24 16:48:31] ID="centos"
[2025-05-24 16:48:31] ID_LIKE="rhel fedora"
[2025-05-24 16:48:31] VERSION_ID="7"
[2025-05-24 16:48:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 16:48:31] ANSI_COLOR="0;31"
[2025-05-24 16:48:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 16:48:31] HOME_URL="https://www.centos.org/"
[2025-05-24 16:48:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 16:48:31] 
[2025-05-24 16:48:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 16:48:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 16:48:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 16:48:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 16:48:31] 
[2025-05-24 16:48:31] 2025-05-24 13:14:57,876 | INFO     | **************************************
[2025-05-24 16:48:31] 2025-05-24 13:14:58,378 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-05-24 16:48:31] 2025-05-24 13:14:58,651 | INFO     | sufficient remaining disk space (496305700864 B)
[2025-05-24 16:48:31] 2025-05-24 13:14:58,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 16:48:31] 2025-05-24 13:14:58,651 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 16:48:31] 2025-05-24 13:14:58,652 | INFO     | update_server=False
[2025-05-24 16:48:31] 2025-05-24 13:14:58,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 16:48:31] 2025-05-24 13:14:58,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 16:48:31] 2025-05-24 13:14:58,654 | INFO     | aborting loop
[2025-05-24 16:48:31] 2025-05-24 13:14:58,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 16:48:31] 2025-05-24 13:14:58,886 | INFO     | all job control threads have been joined
[2025-05-24 16:48:31] 2025-05-24 13:14:58,989 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 16:48:31] 2025-05-24 13:14:58,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 16:48:31] 2025-05-24 13:14:58,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 16:48:31] 2025-05-24 13:14:59,412 | INFO     | all data control threads have been joined
[2025-05-24 16:48:31] 2025-05-24 13:14:59,657 | INFO     | [job] retrieve thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,660 | INFO     | [job] job monitor thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,700 | INFO     | [payload] failed_post thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,739 | INFO     | [payload] validate_post thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,756 | INFO     | all payload control threads have been joined
[2025-05-24 16:48:31] 2025-05-24 13:14:59,850 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,892 | INFO     | [job] control thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,963 | INFO     | [job] validate thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:14:59,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 16:48:31] 2025-05-24 13:15:00,418 | INFO     | [data] control thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,762 | INFO     | [payload] control thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,763 | INFO     | [data] copytool_in thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,783 | INFO     | [data] copytool_out thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,822 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,967 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:00,996 | INFO     | [job] queue monitor thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:01,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 16:48:31] 2025-05-24 13:15:05,223 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 16:48:31] 2025-05-24 13:15:05,603 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663347316544)>', '<ExcThread(monitor, started 139662916044544)>']
[2025-05-24 16:48:31] 2025-05-24 13:15:06,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 16:48:31] 2025-05-24 13:15:06,031 | INFO     | [monitor] control thread has ended
[2025-05-24 16:48:31] 2025-05-24 13:15:10,629 | INFO     | all workflow threads have been joined
[2025-05-24 16:48:31] 2025-05-24 13:15:10,629 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 16:48:31] 2025-05-24 13:15:10,630 | INFO     | traces error code: 0
[2025-05-24 16:48:31] 2025-05-24 13:15:10,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 16:48:31] 2025-05-24 13:15:10,861 [wrapper] ==== pilot stdout END ====
[2025-05-24 16:48:31] 2025-05-24 13:15:10,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 16:48:31] 2025-05-24 13:15:10,940 [wrapper] pilotpid: 19656
[2025-05-24 16:48:31] 2025-05-24 13:15:10,980 [wrapper] Pilot exit status: 0
[2025-05-24 16:48:31] 2025-05-24 13:15:11,382 [wrapper] pandaids: 6665205887
[2025-05-24 16:48:31] 2025-05-24 13:15:12,393 [wrapper] cleanup supervisor_pilot 23602 19657
[2025-05-24 16:48:31] 2025-05-24 13:15:12,481 [wrapper] Test setup, not cleaning
[2025-05-24 16:48:31] 2025-05-24 13:15:12,608 [wrapper] apfmon messages muted
[2025-05-24 16:48:31] 2025-05-24 13:15:12,700 [wrapper] ==== wrapper stdout END ====
[2025-05-24 16:48:31] 2025-05-24 13:15:12,805 [wrapper] ==== wrapper stderr END ====
[2025-05-24 16:48:31]  *** Error codes and diagnostics ***
[2025-05-24 16:48:31]     "exeErrorCode": 0,
[2025-05-24 16:48:31]     "exeErrorDiag": "",
[2025-05-24 16:48:31]     "pilotErrorCode": 0,
[2025-05-24 16:48:31]     "pilotErrorDiag": "",
[2025-05-24 16:48:31]  *** Listing of results directory ***
[2025-05-24 16:48:31] total 418492
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc    495897 May 24 06:11 pilot3.tar.gz
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc      5111 May 24 06:59 queuedata.json
[2025-05-24 16:48:31] -rwx------. 1 boinc boinc     37140 May 24 07:00 runpilot2-wrapper.sh
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc       100 May 24 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 16:48:31] -rwxr-xr-x. 1 boinc boinc      7986 May 24 10:02 run_atlas
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc       105 May 24 10:02 job.xml
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc      6372 May 24 10:02 init_data.xml
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc 221547373 May 24 10:02 EVNT.44871834._000121.pool.root.1
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc     15093 May 24 10:02 start_atlas.sh
[2025-05-24 16:48:31] drwxrwx--x. 2 boinc boinc        68 May 24 10:02 shared
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc    508873 May 24 10:02 input.tar.gz
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc         0 May 24 10:02 boinc_lockfile
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc      2557 May 24 10:02 pandaJob.out
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc    988604 May 24 10:02 agis_schedconf.cvmfs.json
[2025-05-24 16:48:31] drwx------. 4 boinc boinc      4096 May 24 10:02 pilot3
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc 199072129 May 24 15:12 HITS.44871837._003023.pool.root.1
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc       531 May 24 15:12 boinc_task_state.xml
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc      1017 May 24 15:13 memory_monitor_summary.json
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc   1596740 May 24 15:13 agis_ddmendpoints.agis.ALL.json
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc    439264 May 24 15:13 log.44871837._003023.job.log.tgz.1
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc        95 May 24 15:14 pilot_heartbeat.json
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc      7688 May 24 15:14 heartbeat.json
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc      4416 May 24 15:15 pilotlog.txt
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc   1612630 May 24 15:15 log.44871837._003023.job.log.1
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc       357 May 24 15:15 output.list
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc       620 May 24 15:15 runtime_log
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc   2068480 May 24 15:15 result.tar.gz
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc      8659 May 24 15:15 runtime_log.err
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc       657 May 24 15:15 6vcKDmTAwc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmz8KKDmBG6E1m.diag
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc      8192 May 24 16:48 boinc_mmap_file
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc        28 May 24 16:48 wrapper_checkpoint.txt
[2025-05-24 16:48:31] -rw-r--r--. 1 boinc boinc     20542 May 24 16:48 stderr.txt
[2025-05-24 16:48:31] HITS file was successfully produced:
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc 199072129 May 24 15:12 shared/HITS.pool.root.1
[2025-05-24 16:48:31]  *** Contents of shared directory: ***
[2025-05-24 16:48:31] total 413300
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc 221547373 May 24 10:02 ATLAS.root_0
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc     15093 May 24 10:02 start_atlas.sh
[2025-05-24 16:48:31] -rw-r--r--. 2 boinc boinc    508873 May 24 10:02 input.tar.gz
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc 199072129 May 24 15:12 HITS.pool.root.1
[2025-05-24 16:48:31] -rw-------. 1 boinc boinc   2068480 May 24 15:15 result.tar.gz
16:48:33 (15657): run_atlas exited; CPU time 71776.616093
16:48:33 (15657): called boinc_finish(0)

</stderr_txt>
]]>

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