Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-25 03:26:32 (9244): Detected: vboxwrapper 26206
2025-05-25 03:26:32 (9244): Detected: BOINC client v8.0.2
2025-05-25 03:26:32 (9244): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-25 03:26:33 (9244): Successfully copied 'init_data.xml' to the shared directory.
2025-05-25 03:26:33 (9244): Create VM. (boinc_4025143c1e5d3fe6, slot#3)
2025-05-25 03:26:34 (9244): Setting Memory Size for VM. (4400MB)
2025-05-25 03:26:34 (9244): Setting CPU Count for VM. (4)
2025-05-25 03:26:34 (9244): Setting Chipset Options for VM.
2025-05-25 03:26:35 (9244): Setting Graphics Controller Options for VM.
2025-05-25 03:26:35 (9244): Setting Boot Options for VM.
2025-05-25 03:26:35 (9244): Setting Network Configuration for NAT.
2025-05-25 03:26:35 (9244): Enabling VM Network Access.
2025-05-25 03:26:36 (9244): Disabling USB Support for VM.
2025-05-25 03:26:36 (9244): Disabling COM Port Support for VM.
2025-05-25 03:26:36 (9244): Disabling LPT Port Support for VM.
2025-05-25 03:26:36 (9244): Disabling Audio Support for VM.
2025-05-25 03:26:37 (9244): Disabling Clipboard Support for VM.
2025-05-25 03:26:37 (9244): Disabling Drag and Drop Support for VM.
2025-05-25 03:26:37 (9244): Adding storage controller(s) to VM.
2025-05-25 03:26:37 (9244): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-25 03:26:38 (9244): Adding VirtualBox Guest Additions to VM.
2025-05-25 03:26:38 (9244): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-25 03:26:39 (9244): forwarding host port 2422 to guest port 80
2025-05-25 03:26:39 (9244): Enabling remote desktop for VM.
2025-05-25 03:26:39 (9244): Required extension pack not installed, remote desktop not enabled.
2025-05-25 03:26:39 (9244): Enabling shared directory for VM.
2025-05-25 03:26:40 (9244): Starting VM using VBoxManage interface. (boinc_4025143c1e5d3fe6, slot#3)
2025-05-25 03:26:48 (9244): Successfully started VM. (PID = '9044')
2025-05-25 03:26:48 (9244): Reporting VM Process ID to BOINC.
2025-05-25 03:26:48 (9244): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-25 03:26:48 (9244): Guest Log: CPUID EDX: 0x178bfbff
2025-05-25 03:26:48 (9244): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-25 03:26:48 (9244): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-25 03:26:48 (9244): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-25 03:26:48 (9244): Detected: Web Application Enabled (http://localhost:2422)
2025-05-25 03:26:48 (9244): Preference change detected
2025-05-25 03:26:48 (9244): Setting CPU throttle for VM. (100%)
2025-05-25 03:26:48 (9244): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-25 03:26:50 (9244): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-25 03:26:50 (9244): Guest Log: BIOS: Booting from Hard Disk...
2025-05-25 03:26:53 (9244): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-25 03:26:53 (9244): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-25 03:26:53 (9244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-25 03:27:01 (9244): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-25 03:27:01 (9244): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-25 03:27:11 (9244): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000256 main     Log opened 2025-05-25T03:27:09.258031000Z
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000457 main     OS Product: Linux
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000520 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000580 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000639 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000641 main     Process ID: 1310
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.000642 main     Package type: LINUX_64BITS_GENERIC
2025-05-25 03:27:11 (9244): Guest Log: 00:00:00.002116 main     5.2.32 r132073 started. Verbose level = 0
2025-05-25 03:27:11 (9244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-25 03:27:11 (9244): Guest Log: [INFO] Mounting shared directory
2025-05-25 03:27:11 (9244): Guest Log: [INFO] Checking for init_data.xml
2025-05-25 03:27:17 (9244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-25 03:27:17 (9244): Guest Log: [INFO] Detected branch: prod
2025-05-25 03:27:18 (9244): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-25 03:27:18 (9244): Guest Log: Copying input files
2025-05-25 03:27:19 (9244): Guest Log: Copied input files into RunAtlas.
2025-05-25 03:27:19 (9244): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-25 03:27:19 (9244): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-25 03:27:19 (9244): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-25 03:27:19 (9244): Guest Log: Further information can be found at the LHC@home message board.
2025-05-25 03:27:21 (9244): Guest Log: 00:00:10.036318 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 616 495 000ns (GuestNow=1 748 136 440 647 278 000 ns GuestLast=1 748 143 629 263 773 000 ns fSetTimeLastLoop=true )
2025-05-25 03:27:30 (9244): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-25 03:27:30 (9244): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-25 03:27:30 (9244): Guest Log: 2.6.3.0 1586 0 30140 146385 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-25 03:27:32 (9244): Guest Log: copied the webapp to /var/www
2025-05-25 03:27:32 (9244): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-25 03:27:32 (9244): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-25 03:27:32 (9244): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-25 03:27:32 (9244): Guest Log:  *** Starting ATLAS job. (PandaID=6665207660 taskID=44871837) ***
2025-05-25 05:09:15 (9244): Status Report: Elapsed Time: '6000.015310'
2025-05-25 05:09:15 (9244): Status Report: CPU Time: '20483.296875'
2025-05-25 06:56:05 (9244): Status Report: Elapsed Time: '12000.884312'
2025-05-25 06:56:05 (9244): Status Report: CPU Time: '45766.437500'
2025-05-25 08:42:00 (9244): Status Report: Elapsed Time: '18001.435350'
2025-05-25 08:42:00 (9244): Status Report: CPU Time: '70883.250000'
2025-05-25 10:27:37 (9244): Status Report: Elapsed Time: '24002.047056'
2025-05-25 10:27:37 (9244): Status Report: CPU Time: '95896.859375'
2025-05-25 11:34:46 (9244): Guest Log:  *** Job finished ***
2025-05-25 11:34:46 (9244): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:35,833 | INFO     | [data] copytool_in thread has finished
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:35,834 | INFO     | [payload] control thread has finished
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:37,567 | INFO     | [data] queue_monitor thread has finished
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:38,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229963802432)>', '<ExcThread(monitor, started 140229398750976)>']
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:39,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:39,639 | INFO     | [monitor] control thread has ended
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:43,969 | INFO     | all workflow threads have been joined
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:43,969 | INFO     | end of generic workflow (traces error code: 0)
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:43,970 | INFO     | traces error code: 0
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:43,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,108 [wrapper] ==== pilot stdout END ====
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,114 [wrapper] ==== wrapper stdout RESUME ====
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,119 [wrapper] pilotpid: 5900
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,124 [wrapper] Pilot exit status: 0
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,953 [wrapper] pandaids: 6665207660
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:44,994 [wrapper] cleanup supervisor_pilot  3889 5901
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:45,000 [wrapper] Test setup, not cleaning
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:45,007 [wrapper] apfmon messages muted
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:45,014 [wrapper] ==== wrapper stdout END ====
2025-05-25 11:34:46 (9244): Guest Log: 2025-05-25 09:34:45,020 [wrapper] ==== wrapper stderr END ====
2025-05-25 11:34:46 (9244): Guest Log:  *** Error codes and diagnostics ***
2025-05-25 11:34:46 (9244): Guest Log:     "exeErrorCode": 0,
2025-05-25 11:34:46 (9244): Guest Log:     "exeErrorDiag": "",
2025-05-25 11:34:46 (9244): Guest Log:     "pilotErrorCode": 0,
2025-05-25 11:34:46 (9244): Guest Log:     "pilotErrorDiag": "",
2025-05-25 11:34:46 (9244): Guest Log:  *** Listing of results directory ***
2025-05-25 11:34:46 (9244): Guest Log: total 195256
2025-05-25 11:34:46 (9244): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:01 pilot3.tar.gz
2025-05-25 11:34:46 (9244): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 05:05 runpilot2-wrapper.sh
2025-05-25 11:34:46 (9244): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 05:05 queuedata.json
2025-05-25 11:34:46 (9244): Guest Log: -rwxr-xr-x. 1 atlas atlas      9141 May 25 01:27 init_data.xml
2025-05-25 11:34:46 (9244): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 May 25 01:27 input.tar.gz
2025-05-25 11:34:46 (9244): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 25 01:27 start_atlas.sh
2025-05-25 11:34:46 (9244): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 25 01:27 EVNT.44871834._000166.pool.root.1 -> /data/./ATLAS.root_0
2025-05-25 11:34:46 (9244): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 25 01:27 pandaJob.out
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas    990803 May 25 01:28 agis_schedconf.cvmfs.json
2025-05-25 11:34:46 (9244): Guest Log: drwx------. 4 atlas atlas      4096 May 25 01:29 pilot3
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas 190595619 May 25 09:33 HITS.44871837._004140.pool.root.1
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas        95 May 25 09:33 pilot_heartbeat.json
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas      1032 May 25 09:34 memory_monitor_summary.json
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas   1596740 May 25 09:34 agis_ddmendpoints.agis.ALL.json
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas    451443 May 25 09:34 log.44871837._004140.job.log.tgz.1
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas      7692 May 25 09:34 heartbeat.json
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas      4413 May 25 09:34 pilotlog.txt
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas   2339455 May 25 09:34 log.44871837._004140.job.log.1
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas       357 May 25 09:34 output.list
2025-05-25 11:34:46 (9244): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 25 09:34 runtime_log
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas   2805760 May 25 09:34 result.tar.gz
2025-05-25 11:34:46 (9244): Guest Log: -rw-r--r--. 1 atlas atlas      8595 May 25 09:34 runtime_log.err
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas       662 May 25 09:34 2I1MDmUFwc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYJLKDmflg2Lm.diag
2025-05-25 11:34:46 (9244): Guest Log: Looking for outputfile HITS.44871837._004140.pool.root.1
2025-05-25 11:34:46 (9244): Guest Log: HITS file was successfully produced
2025-05-25 11:34:46 (9244): Guest Log: -rw-------. 1 atlas atlas 190595619 May 25 09:33 /home/atlas/RunAtlas/HITS.44871837._004140.pool.root.1
2025-05-25 11:34:48 (9244): Guest Log: Successfully finished the ATLAS job!
2025-05-25 11:34:48 (9244): Guest Log: Copying the results back to the shared directory!
2025-05-25 11:34:48 (9244): Guest Log:  *** Contents of shared directory: ***
2025-05-25 11:34:48 (9244): Guest Log: total 406096
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root 221896525 May 25 01:26 ATLAS.root_0
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root 190595619 May 25 09:34 HITS.pool.root.1
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root      9141 May 25 01:26 init_data.xml
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root    508876 May 24 06:40 input.tar.gz
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root   2805760 May 25 09:34 result.tar.gz
2025-05-25 11:34:48 (9244): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 06:40 start_atlas.sh
2025-05-25 11:34:48 (9244): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-25 11:34:48 (9244): VM Completion File Detected.
2025-05-25 11:34:48 (9244): Powering off VM.
2025-05-25 11:34:48 (9244): Successfully stopped VM.
2025-05-25 11:34:48 (9244): Deregistering VM. (boinc_4025143c1e5d3fe6, slot#3)
2025-05-25 11:34:49 (9244): Removing network bandwidth throttle group from VM.
2025-05-25 11:34:49 (9244): Removing VM from VirtualBox.
11:34:54 (9244): called boinc_finish(0)

</stderr_txt>
]]>

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