Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 17:40:41 (4908): Detected: vboxwrapper 26206
2025-05-24 17:40:41 (4908): Detected: BOINC client v8.0.2
2025-05-24 17:40:41 (4908): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-24 17:40:42 (4908): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 17:40:42 (4908): Create VM. (boinc_0aafd27014ed6202, slot#3)
2025-05-24 17:40:43 (4908): Setting Memory Size for VM. (4400MB)
2025-05-24 17:40:43 (4908): Setting CPU Count for VM. (4)
2025-05-24 17:40:43 (4908): Setting Chipset Options for VM.
2025-05-24 17:40:44 (4908): Setting Graphics Controller Options for VM.
2025-05-24 17:40:44 (4908): Setting Boot Options for VM.
2025-05-24 17:40:44 (4908): Setting Network Configuration for NAT.
2025-05-24 17:40:44 (4908): Enabling VM Network Access.
2025-05-24 17:40:45 (4908): Disabling USB Support for VM.
2025-05-24 17:40:45 (4908): Disabling COM Port Support for VM.
2025-05-24 17:40:45 (4908): Disabling LPT Port Support for VM.
2025-05-24 17:40:45 (4908): Disabling Audio Support for VM.
2025-05-24 17:40:46 (4908): Disabling Clipboard Support for VM.
2025-05-24 17:40:46 (4908): Disabling Drag and Drop Support for VM.
2025-05-24 17:40:46 (4908): Adding storage controller(s) to VM.
2025-05-24 17:40:46 (4908): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 17:40:47 (4908): Adding VirtualBox Guest Additions to VM.
2025-05-24 17:40:47 (4908): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 17:40:48 (4908): forwarding host port 58774 to guest port 80
2025-05-24 17:40:48 (4908): Enabling remote desktop for VM.
2025-05-24 17:40:48 (4908): Required extension pack not installed, remote desktop not enabled.
2025-05-24 17:40:48 (4908): Enabling shared directory for VM.
2025-05-24 17:40:49 (4908): Starting VM using VBoxManage interface. (boinc_0aafd27014ed6202, slot#3)
2025-05-24 17:40:58 (4908): Successfully started VM. (PID = '4584')
2025-05-24 17:40:58 (4908): Reporting VM Process ID to BOINC.
2025-05-24 17:40:58 (4908): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-24 17:40:58 (4908): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 17:40:58 (4908): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 17:40:58 (4908): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 17:40:58 (4908): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 17:40:58 (4908): Detected: Web Application Enabled (http://localhost:58774)
2025-05-24 17:40:58 (4908): Preference change detected
2025-05-24 17:40:58 (4908): Setting CPU throttle for VM. (100%)
2025-05-24 17:40:58 (4908): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 17:41:00 (4908): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 17:41:00 (4908): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 17:41:03 (4908): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 17:41:03 (4908): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 17:41:03 (4908): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 17:41:11 (4908): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 17:41:11 (4908): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 17:41:20 (4908): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000140 main     Log opened 2025-05-24T17:41:19.131207000Z
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000309 main     OS Product: Linux
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000365 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000407 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000448 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000450 main     Process ID: 1310
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.000451 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 17:41:20 (4908): Guest Log: 00:00:00.001842 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 17:41:20 (4908): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 17:41:20 (4908): Guest Log: [INFO] Mounting shared directory
2025-05-24 17:41:21 (4908): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 17:41:29 (4908): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 17:41:29 (4908): Guest Log: [INFO] Detected branch: prod
2025-05-24 17:41:30 (4908): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 17:41:30 (4908): Guest Log: Copying input files
2025-05-24 17:41:30 (4908): Guest Log: 00:00:10.004128 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 204 324 000ns (GuestNow=1 748 101 289 930 406 000 ns GuestLast=1 748 108 479 134 730 000 ns fSetTimeLastLoop=true )
2025-05-24 17:41:31 (4908): Guest Log: Copied input files into RunAtlas.
2025-05-24 17:41:31 (4908): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 17:41:31 (4908): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 17:41:31 (4908): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 17:41:31 (4908): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 17:41:43 (4908): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 17:41:43 (4908): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 17:41:43 (4908): Guest Log: 2.6.3.0 1588 0 30192 146372 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 17:41:44 (4908): Guest Log: copied the webapp to /var/www
2025-05-24 17:41:44 (4908): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-24 17:41:44 (4908): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-24 17:41:45 (4908): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 17:41:45 (4908): Guest Log:  *** Starting ATLAS job. (PandaID=6665206716 taskID=44871837) ***
2025-05-24 19:21:02 (4908): Status Report: Elapsed Time: '6000.000000'
2025-05-24 19:21:02 (4908): Status Report: CPU Time: '3172.953125'
2025-05-24 21:04:41 (4908): Status Report: Elapsed Time: '12000.493561'
2025-05-24 21:04:41 (4908): Status Report: CPU Time: '27790.578125'
2025-05-24 22:48:33 (4908): Status Report: Elapsed Time: '18000.639683'
2025-05-24 22:48:33 (4908): Status Report: CPU Time: '52418.562500'
2025-05-25 00:32:07 (4908): Status Report: Elapsed Time: '24001.229902'
2025-05-25 00:32:08 (4908): Status Report: CPU Time: '76991.093750'
2025-05-25 02:15:50 (4908): Status Report: Elapsed Time: '30001.695429'
2025-05-25 02:15:50 (4908): Status Report: CPU Time: '101615.625000'
2025-05-25 03:26:19 (4908): Guest Log:  *** Job finished ***
2025-05-25 03:26:19 (4908): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:09,424 | INFO     | [job] control thread has finished
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:09,425 | INFO     | [data] copytool_out thread has finished
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:10,701 | INFO     | [data] queue_monitor thread has finished
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:12,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433248077632)>', '<ExcThread(monitor, started 140432210130688)>']
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:13,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:13,150 | INFO     | [monitor] control thread has ended
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:17,913 | INFO     | all workflow threads have been joined
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:17,913 | INFO     | end of generic workflow (traces error code: 0)
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:17,914 | INFO     | traces error code: 0
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:17,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,032 [wrapper] ==== pilot stdout END ====
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,038 [wrapper] ==== wrapper stdout RESUME ====
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,043 [wrapper] pilotpid: 6262
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,048 [wrapper] Pilot exit status: 0
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,369 [wrapper] pandaids: 6665206716
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,411 [wrapper] cleanup supervisor_pilot 11114 6263
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,417 [wrapper] Test setup, not cleaning
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,423 [wrapper] apfmon messages muted
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,428 [wrapper] ==== wrapper stdout END ====
2025-05-25 03:26:19 (4908): Guest Log: 2025-05-25 01:26:18,432 [wrapper] ==== wrapper stderr END ====
2025-05-25 03:26:19 (4908): Guest Log:  *** Error codes and diagnostics ***
2025-05-25 03:26:19 (4908): Guest Log:     "exeErrorCode": 0,
2025-05-25 03:26:19 (4908): Guest Log:     "exeErrorDiag": "",
2025-05-25 03:26:19 (4908): Guest Log:     "pilotErrorCode": 0,
2025-05-25 03:26:19 (4908): Guest Log:     "pilotErrorDiag": "",
2025-05-25 03:26:19 (4908): Guest Log:  *** Listing of results directory ***
2025-05-25 03:26:19 (4908): Guest Log: total 196660
2025-05-25 03:26:19 (4908): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:01 pilot3.tar.gz
2025-05-25 03:26:19 (4908): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 05:04 runpilot2-wrapper.sh
2025-05-25 03:26:19 (4908): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 05:05 queuedata.json
2025-05-25 03:26:19 (4908): Guest Log: -rwxr-xr-x. 1 atlas atlas      9141 May 24 15:41 init_data.xml
2025-05-25 03:26:19 (4908): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 May 24 15:41 input.tar.gz
2025-05-25 03:26:19 (4908): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 15:41 start_atlas.sh
2025-05-25 03:26:19 (4908): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 15:41 EVNT.44871834._000151.pool.root.1 -> /data/./ATLAS.root_0
2025-05-25 03:26:19 (4908): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 24 15:41 pandaJob.out
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas    988548 May 24 16:12 agis_schedconf.cvmfs.json
2025-05-25 03:26:19 (4908): Guest Log: drwx------. 4 atlas atlas      4096 May 24 16:12 pilot3
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas 191504722 May 25 01:24 HITS.44871837._003756.pool.root.1
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas        96 May 25 01:25 pilot_heartbeat.json
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas      1031 May 25 01:25 memory_monitor_summary.json
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas   1596740 May 25 01:25 agis_ddmendpoints.agis.ALL.json
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas    463158 May 25 01:25 log.44871837._003756.job.log.tgz.1
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas      7696 May 25 01:26 heartbeat.json
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas      4413 May 25 01:26 pilotlog.txt
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas   2593496 May 25 01:26 log.44871837._003756.job.log.1
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas       357 May 25 01:26 output.list
2025-05-25 03:26:19 (4908): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 25 01:26 runtime_log
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas   3072000 May 25 01:26 result.tar.gz
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas       662 May 25 01:26 xf5MDmeEwc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmESPKDm5OKrUo.diag
2025-05-25 03:26:19 (4908): Guest Log: -rw-r--r--. 1 atlas atlas      8595 May 25 01:26 runtime_log.err
2025-05-25 03:26:19 (4908): Guest Log: Looking for outputfile HITS.44871837._003756.pool.root.1
2025-05-25 03:26:19 (4908): Guest Log: HITS file was successfully produced
2025-05-25 03:26:19 (4908): Guest Log: -rw-------. 1 atlas atlas 191504722 May 25 01:24 /home/atlas/RunAtlas/HITS.44871837._003756.pool.root.1
2025-05-25 03:26:21 (4908): Guest Log: Successfully finished the ATLAS job!
2025-05-25 03:26:21 (4908): Guest Log: Copying the results back to the shared directory!
2025-05-25 03:26:21 (4908): Guest Log:  *** Contents of shared directory: ***
2025-05-25 03:26:21 (4908): Guest Log: total 408036
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root 222705411 May 24 15:40 ATLAS.root_0
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root 191504722 May 25 01:26 HITS.pool.root.1
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root      9141 May 24 15:40 init_data.xml
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root    508875 May 24 06:40 input.tar.gz
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root   3072000 May 25 01:26 result.tar.gz
2025-05-25 03:26:21 (4908): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 06:40 start_atlas.sh
2025-05-25 03:26:21 (4908): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-25 03:26:21 (4908): VM Completion File Detected.
2025-05-25 03:26:21 (4908): Powering off VM.
2025-05-25 03:26:22 (4908): Successfully stopped VM.
2025-05-25 03:26:22 (4908): Deregistering VM. (boinc_0aafd27014ed6202, slot#3)
2025-05-25 03:26:22 (4908): Removing network bandwidth throttle group from VM.
2025-05-25 03:26:22 (4908): Removing VM from VirtualBox.
03:26:28 (4908): called boinc_finish(0)

</stderr_txt>
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