Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-25 12:11:47 (8036): Detected: vboxwrapper 26206
2025-05-25 12:11:47 (8036): Detected: BOINC client v8.0.2
2025-05-25 12:11:47 (8036): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-25 12:11:48 (8036): Successfully copied 'init_data.xml' to the shared directory.
2025-05-25 12:11:48 (8036): Create VM. (boinc_a2a38878abfae1bf, slot#2)
2025-05-25 12:11:49 (8036): Setting Memory Size for VM. (4400MB)
2025-05-25 12:11:49 (8036): Setting CPU Count for VM. (4)
2025-05-25 12:11:49 (8036): Setting Chipset Options for VM.
2025-05-25 12:11:49 (8036): Setting Graphics Controller Options for VM.
2025-05-25 12:11:50 (8036): Setting Boot Options for VM.
2025-05-25 12:11:50 (8036): Setting Network Configuration for NAT.
2025-05-25 12:11:50 (8036): Enabling VM Network Access.
2025-05-25 12:11:51 (8036): Disabling USB Support for VM.
2025-05-25 12:11:51 (8036): Disabling COM Port Support for VM.
2025-05-25 12:11:51 (8036): Disabling LPT Port Support for VM.
2025-05-25 12:11:51 (8036): Disabling Audio Support for VM.
2025-05-25 12:11:52 (8036): Disabling Clipboard Support for VM.
2025-05-25 12:11:52 (8036): Disabling Drag and Drop Support for VM.
2025-05-25 12:11:52 (8036): Adding storage controller(s) to VM.
2025-05-25 12:11:52 (8036): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-25 12:11:53 (8036): Adding VirtualBox Guest Additions to VM.
2025-05-25 12:11:53 (8036): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-25 12:11:54 (8036): forwarding host port 18634 to guest port 80
2025-05-25 12:11:54 (8036): Enabling remote desktop for VM.
2025-05-25 12:11:54 (8036): Required extension pack not installed, remote desktop not enabled.
2025-05-25 12:11:54 (8036): Enabling shared directory for VM.
2025-05-25 12:11:55 (8036): Starting VM using VBoxManage interface. (boinc_a2a38878abfae1bf, slot#2)
2025-05-25 12:12:03 (8036): Successfully started VM. (PID = '3564')
2025-05-25 12:12:03 (8036): Reporting VM Process ID to BOINC.
2025-05-25 12:12:03 (8036): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-25 12:12:03 (8036): Guest Log: CPUID EDX: 0x178bfbff
2025-05-25 12:12:03 (8036): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-25 12:12:03 (8036): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-25 12:12:03 (8036): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-25 12:12:03 (8036): Detected: Web Application Enabled (http://localhost:18634)
2025-05-25 12:12:03 (8036): Preference change detected
2025-05-25 12:12:03 (8036): Setting CPU throttle for VM. (100%)
2025-05-25 12:12:03 (8036): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-25 12:12:05 (8036): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-25 12:12:05 (8036): Guest Log: BIOS: Booting from Hard Disk...
2025-05-25 12:12:08 (8036): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-25 12:12:08 (8036): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-25 12:12:08 (8036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-25 12:12:15 (8036): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-25 12:12:15 (8036): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-25 12:12:25 (8036): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000233 main     Log opened 2025-05-25T12:12:23.618980000Z
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000404 main     OS Product: Linux
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000466 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000524 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000584 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000586 main     Process ID: 1307
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.000588 main     Package type: LINUX_64BITS_GENERIC
2025-05-25 12:12:25 (8036): Guest Log: 00:00:00.002690 main     5.2.32 r132073 started. Verbose level = 0
2025-05-25 12:12:25 (8036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-25 12:12:25 (8036): Guest Log: [INFO] Mounting shared directory
2025-05-25 12:12:25 (8036): Guest Log: [INFO] Checking for init_data.xml
2025-05-25 12:12:35 (8036): Guest Log: 00:00:10.007645 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 403 655 000ns (GuestNow=1 748 167 955 220 352 000 ns GuestLast=1 748 175 143 624 007 000 ns fSetTimeLastLoop=true )
2025-05-25 12:12:36 (8036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-25 12:12:36 (8036): Guest Log: [INFO] Detected branch: prod
2025-05-25 12:12:37 (8036): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-25 12:12:37 (8036): Guest Log: Copying input files
2025-05-25 12:12:38 (8036): Guest Log: Copied input files into RunAtlas.
2025-05-25 12:12:38 (8036): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-25 12:12:38 (8036): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-25 12:12:38 (8036): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-25 12:12:38 (8036): Guest Log: Further information can be found at the LHC@home message board.
2025-05-25 12:12:50 (8036): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-25 12:12:51 (8036): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-25 12:12:51 (8036): Guest Log: 2.6.3.0 1585 0 30148 146399 4 1 3117617 4096000 0 65024 0 0 n/a 1 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-25 12:12:52 (8036): Guest Log: copied the webapp to /var/www
2025-05-25 12:12:52 (8036): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-25 12:12:52 (8036): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-25 12:12:53 (8036): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-25 12:12:53 (8036): Guest Log:  *** Starting ATLAS job. (PandaID=6665206338 taskID=44871837) ***
2025-05-25 13:53:33 (8036): Status Report: Elapsed Time: '6000.166025'
2025-05-25 13:53:33 (8036): Status Report: CPU Time: '10396.000000'
2025-05-25 15:37:07 (8036): Status Report: Elapsed Time: '12000.311548'
2025-05-25 15:37:07 (8036): Status Report: CPU Time: '34832.265625'
2025-05-25 17:20:38 (8036): Status Report: Elapsed Time: '18000.717293'
2025-05-25 17:20:38 (8036): Status Report: CPU Time: '59411.625000'
2025-05-25 19:04:31 (8036): Status Report: Elapsed Time: '24001.557598'
2025-05-25 19:04:32 (8036): Status Report: CPU Time: '84090.500000'
2025-05-25 20:46:02 (8036): Status Report: Elapsed Time: '30002.114443'
2025-05-25 20:46:02 (8036): Status Report: CPU Time: '108306.750000'
2025-05-25 21:19:06 (8036): Guest Log:  *** Job finished ***
2025-05-25 21:19:06 (8036): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:55,479 | INFO     | [payload] validate_post thread has finished
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:55,642 | INFO     | [payload] control thread has finished
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:57,177 | INFO     | [data] queue_monitor thread has finished
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:58,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361779377984)>', '<ExcThread(monitor, started 140360596580096)>']
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:59,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:18:59,382 | INFO     | [monitor] control thread has ended
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,744 | INFO     | all workflow threads have been joined
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,745 | INFO     | end of generic workflow (traces error code: 0)
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,745 | INFO     | traces error code: 0
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,904 [wrapper] ==== pilot stdout END ====
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,912 [wrapper] ==== wrapper stdout RESUME ====
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,918 [wrapper] pilotpid: 6131
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:03,923 [wrapper] Pilot exit status: 0
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,916 [wrapper] pandaids: 6665206338
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,969 [wrapper] cleanup supervisor_pilot  7368 6132
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,975 [wrapper] Test setup, not cleaning
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,980 [wrapper] apfmon messages muted
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,988 [wrapper] ==== wrapper stdout END ====
2025-05-25 21:19:06 (8036): Guest Log: 2025-05-25 19:19:04,995 [wrapper] ==== wrapper stderr END ====
2025-05-25 21:19:06 (8036): Guest Log:  *** Error codes and diagnostics ***
2025-05-25 21:19:06 (8036): Guest Log:     "exeErrorCode": 0,
2025-05-25 21:19:06 (8036): Guest Log:     "exeErrorDiag": "",
2025-05-25 21:19:06 (8036): Guest Log:     "pilotErrorCode": 0,
2025-05-25 21:19:06 (8036): Guest Log:     "pilotErrorDiag": "",
2025-05-25 21:19:06 (8036): Guest Log:  *** Listing of results directory ***
2025-05-25 21:19:06 (8036): Guest Log: total 200404
2025-05-25 21:19:06 (8036): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:01 pilot3.tar.gz
2025-05-25 21:19:06 (8036): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 05:03 queuedata.json
2025-05-25 21:19:06 (8036): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 05:04 runpilot2-wrapper.sh
2025-05-25 21:19:06 (8036): Guest Log: -rwxr-xr-x. 1 atlas atlas      9141 May 25 10:12 init_data.xml
2025-05-25 21:19:06 (8036): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 May 25 10:12 input.tar.gz
2025-05-25 21:19:06 (8036): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 25 10:12 start_atlas.sh
2025-05-25 21:19:06 (8036): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 25 10:12 EVNT.44871834._000138.pool.root.1 -> /data/./ATLAS.root_0
2025-05-25 21:19:06 (8036): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 25 10:12 pandaJob.out
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas    990811 May 25 10:31 agis_schedconf.cvmfs.json
2025-05-25 21:19:06 (8036): Guest Log: drwx------. 4 atlas atlas      4096 May 25 10:32 pilot3
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas 195399719 May 25 19:17 HITS.44871837._003442.pool.root.1
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas      1031 May 25 19:18 memory_monitor_summary.json
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas   1596740 May 25 19:18 agis_ddmendpoints.agis.ALL.json
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas    478588 May 25 19:18 log.44871837._003442.job.log.tgz.1
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas        95 May 25 19:18 pilot_heartbeat.json
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas      7697 May 25 19:18 heartbeat.json
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas      4536 May 25 19:19 pilotlog.txt
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas   2544007 May 25 19:19 log.44871837._003442.job.log.1
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas       357 May 25 19:19 output.list
2025-05-25 21:19:06 (8036): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 25 19:19 runtime_log
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas   3041280 May 25 19:19 result.tar.gz
2025-05-25 21:19:06 (8036): Guest Log: -rw-r--r--. 1 atlas atlas      8595 May 25 19:19 runtime_log.err
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas       662 May 25 19:19 MZ0LDmYEwc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPDLKDmYu9bfm.diag
2025-05-25 21:19:06 (8036): Guest Log: Looking for outputfile HITS.44871837._003442.pool.root.1
2025-05-25 21:19:06 (8036): Guest Log: HITS file was successfully produced
2025-05-25 21:19:06 (8036): Guest Log: -rw-------. 1 atlas atlas 195399719 May 25 19:17 /home/atlas/RunAtlas/HITS.44871837._003442.pool.root.1
2025-05-25 21:19:07 (8036): Guest Log: Successfully finished the ATLAS job!
2025-05-25 21:19:07 (8036): Guest Log: Copying the results back to the shared directory!
2025-05-25 21:19:08 (8036): Guest Log:  *** Contents of shared directory: ***
2025-05-25 21:19:08 (8036): Guest Log: total 415056
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root 226027771 May 25 10:11 ATLAS.root_0
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root 195399719 May 25 19:19 HITS.pool.root.1
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root      9141 May 25 10:11 init_data.xml
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root    508874 May 24 06:40 input.tar.gz
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root   3041280 May 25 19:19 result.tar.gz
2025-05-25 21:19:08 (8036): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 06:40 start_atlas.sh
2025-05-25 21:19:08 (8036): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-25 21:19:08 (8036): VM Completion File Detected.
2025-05-25 21:19:08 (8036): Powering off VM.
2025-05-25 21:19:09 (8036): Successfully stopped VM.
2025-05-25 21:19:09 (8036): Deregistering VM. (boinc_a2a38878abfae1bf, slot#2)
2025-05-25 21:19:09 (8036): Removing network bandwidth throttle group from VM.
2025-05-25 21:19:09 (8036): Removing VM from VirtualBox.
21:19:15 (8036): called boinc_finish(0)

</stderr_txt>
]]>

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