Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-26 13:11:35 (4472): Detected: vboxwrapper 26206
2025-05-26 13:11:35 (4472): Detected: BOINC client v8.0.2
2025-05-26 13:11:36 (4472): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-26 13:11:36 (4472): Successfully copied 'init_data.xml' to the shared directory.
2025-05-26 13:11:36 (4472): Create VM. (boinc_b16aa3a322b53f2a, slot#3)
2025-05-26 13:11:37 (4472): Setting Memory Size for VM. (4400MB)
2025-05-26 13:11:38 (4472): Setting CPU Count for VM. (4)
2025-05-26 13:11:38 (4472): Setting Chipset Options for VM.
2025-05-26 13:11:38 (4472): Setting Graphics Controller Options for VM.
2025-05-26 13:11:39 (4472): Setting Boot Options for VM.
2025-05-26 13:11:39 (4472): Setting Network Configuration for NAT.
2025-05-26 13:11:39 (4472): Enabling VM Network Access.
2025-05-26 13:11:39 (4472): Disabling USB Support for VM.
2025-05-26 13:11:40 (4472): Disabling COM Port Support for VM.
2025-05-26 13:11:40 (4472): Disabling LPT Port Support for VM.
2025-05-26 13:11:40 (4472): Disabling Audio Support for VM.
2025-05-26 13:11:40 (4472): Disabling Clipboard Support for VM.
2025-05-26 13:11:41 (4472): Disabling Drag and Drop Support for VM.
2025-05-26 13:11:41 (4472): Adding storage controller(s) to VM.
2025-05-26 13:11:41 (4472): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-26 13:11:42 (4472): Adding VirtualBox Guest Additions to VM.
2025-05-26 13:11:42 (4472): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-26 13:11:42 (4472): forwarding host port 1277 to guest port 80
2025-05-26 13:11:42 (4472): Enabling remote desktop for VM.
2025-05-26 13:11:43 (4472): Required extension pack not installed, remote desktop not enabled.
2025-05-26 13:11:43 (4472): Enabling shared directory for VM.
2025-05-26 13:11:43 (4472): Starting VM using VBoxManage interface. (boinc_b16aa3a322b53f2a, slot#3)
2025-05-26 13:11:52 (4472): Successfully started VM. (PID = '3880')
2025-05-26 13:11:52 (4472): Reporting VM Process ID to BOINC.
2025-05-26 13:11:52 (4472): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-26 13:11:52 (4472): Guest Log: CPUID EDX: 0x178bfbff
2025-05-26 13:11:52 (4472): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-26 13:11:52 (4472): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-26 13:11:52 (4472): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-26 13:11:52 (4472): Detected: Web Application Enabled (http://localhost:1277)
2025-05-26 13:11:52 (4472): Preference change detected
2025-05-26 13:11:52 (4472): Setting CPU throttle for VM. (100%)
2025-05-26 13:11:52 (4472): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-26 13:11:54 (4472): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-26 13:11:54 (4472): Guest Log: BIOS: Booting from Hard Disk...
2025-05-26 13:11:57 (4472): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-26 13:11:57 (4472): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-26 13:11:57 (4472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-26 13:12:04 (4472): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-26 13:12:04 (4472): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-26 13:12:14 (4472): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000245 main     Log opened 2025-05-26T13:12:13.171865000Z
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000482 main     OS Product: Linux
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000545 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000605 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000668 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000669 main     Process ID: 1311
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.000671 main     Package type: LINUX_64BITS_GENERIC
2025-05-26 13:12:14 (4472): Guest Log: 00:00:00.001760 main     5.2.32 r132073 started. Verbose level = 0
2025-05-26 13:12:15 (4472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-26 13:12:15 (4472): Guest Log: [INFO] Mounting shared directory
2025-05-26 13:12:15 (4472): Guest Log: [INFO] Checking for init_data.xml
2025-05-26 13:12:20 (4472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-26 13:12:20 (4472): Guest Log: [INFO] Detected branch: prod
2025-05-26 13:12:21 (4472): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-26 13:12:21 (4472): Guest Log: Copying input files
2025-05-26 13:12:23 (4472): Guest Log: Copied input files into RunAtlas.
2025-05-26 13:12:23 (4472): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-26 13:12:23 (4472): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-26 13:12:23 (4472): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-26 13:12:23 (4472): Guest Log: Further information can be found at the LHC@home message board.
2025-05-26 13:12:24 (4472): Guest Log: 00:00:10.008844 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 708 905 000ns (GuestNow=1 748 257 944 466 757 000 ns GuestLast=1 748 265 133 175 662 000 ns fSetTimeLastLoop=true )
2025-05-26 13:12:38 (4472): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-26 13:12:38 (4472): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-26 13:12:38 (4472): Guest Log: 2.6.3.0 1588 0 30176 146436 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-26 13:12:39 (4472): Guest Log: copied the webapp to /var/www
2025-05-26 13:12:39 (4472): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-26 13:12:39 (4472): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-26 13:12:40 (4472): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-26 13:12:40 (4472): Guest Log:  *** Starting ATLAS job. (PandaID=6652832284 taskID=44638099) ***
2025-05-26 14:54:19 (4472): Status Report: Elapsed Time: '6000.000000'
2025-05-26 14:54:19 (4472): Status Report: CPU Time: '16220.046875'
2025-05-26 16:36:29 (4472): Status Report: Elapsed Time: '12000.586081'
2025-05-26 16:36:29 (4472): Status Report: CPU Time: '40566.375000'
2025-05-26 18:20:07 (4472): Status Report: Elapsed Time: '18001.162125'
2025-05-26 18:20:07 (4472): Status Report: CPU Time: '65161.187500'
2025-05-26 20:04:29 (4472): Status Report: Elapsed Time: '24001.518183'
2025-05-26 20:04:29 (4472): Status Report: CPU Time: '89860.984375'
2025-05-26 21:50:14 (4472): Status Report: Elapsed Time: '30001.569866'
2025-05-26 21:50:14 (4472): Status Report: CPU Time: '114858.000000'
2025-05-26 22:15:12 (4472): Guest Log:  *** Job finished ***
2025-05-26 22:15:12 (4472): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:01,729 | INFO     | [job] control thread has finished
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:01,945 | INFO     | [data] copytool_out thread has finished
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:03,504 | INFO     | [data] queue_monitor thread has finished
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:04,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870289934144)>', '<ExcThread(monitor, started 139869099652864)>']
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:05,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:05,160 | INFO     | [monitor] control thread has ended
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,391 | INFO     | all workflow threads have been joined
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,392 | INFO     | end of generic workflow (traces error code: 0)
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,392 | INFO     | traces error code: 0
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,546 [wrapper] ==== pilot stdout END ====
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,555 [wrapper] ==== wrapper stdout RESUME ====
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,562 [wrapper] pilotpid: 6003
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:09,569 [wrapper] Pilot exit status: 0
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,592 [wrapper] pandaids: 6652832284
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,641 [wrapper] cleanup supervisor_pilot  7244 6004
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,651 [wrapper] Test setup, not cleaning
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,658 [wrapper] apfmon messages muted
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,666 [wrapper] ==== wrapper stdout END ====
2025-05-26 22:15:12 (4472): Guest Log: 2025-05-26 20:15:10,675 [wrapper] ==== wrapper stderr END ====
2025-05-26 22:15:12 (4472): Guest Log:  *** Error codes and diagnostics ***
2025-05-26 22:15:12 (4472): Guest Log:     "exeErrorCode": 0,
2025-05-26 22:15:12 (4472): Guest Log:     "exeErrorDiag": "",
2025-05-26 22:15:12 (4472): Guest Log:     "pilotErrorCode": 0,
2025-05-26 22:15:12 (4472): Guest Log:     "pilotErrorDiag": "",
2025-05-26 22:15:12 (4472): Guest Log:  *** Listing of results directory ***
2025-05-26 22:15:12 (4472): Guest Log: total 203768
2025-05-26 22:15:12 (4472): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 17 04:05 pilot3.tar.gz
2025-05-26 22:15:12 (4472): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 17 04:10 queuedata.json
2025-05-26 22:15:12 (4472): Guest Log: -rwx------. 1 atlas atlas     37140 May 17 04:12 runpilot2-wrapper.sh
2025-05-26 22:15:12 (4472): Guest Log: -rwxr-xr-x. 1 atlas atlas      9141 May 26 11:12 init_data.xml
2025-05-26 22:15:12 (4472): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 May 26 11:12 input.tar.gz
2025-05-26 22:15:12 (4472): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 26 11:12 start_atlas.sh
2025-05-26 22:15:12 (4472): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 26 11:12 EVNT.44638096._002000.pool.root.1 -> /data/./ATLAS.root_0
2025-05-26 22:15:12 (4472): Guest Log: -rw-r--r--. 1 atlas atlas      2539 May 26 11:12 pandaJob.out
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas       424 May 26 11:12 setup.sh.local
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas    990437 May 26 11:20 agis_schedconf.cvmfs.json
2025-05-26 22:15:12 (4472): Guest Log: drwx------. 4 atlas atlas      4096 May 26 11:20 pilot3
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas 198831733 May 26 20:13 HITS.44638099._049867.pool.root.1
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas        96 May 26 20:14 pilot_heartbeat.json
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas      1031 May 26 20:14 memory_monitor_summary.json
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas   1603667 May 26 20:14 agis_ddmendpoints.agis.ALL.json
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas    473609 May 26 20:14 log.44638099._049867.job.log.tgz.1
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas      7697 May 26 20:14 heartbeat.json
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas      4536 May 26 20:15 pilotlog.txt
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas   2550402 May 26 20:15 log.44638099._049867.job.log.1
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas       357 May 26 20:15 output.list
2025-05-26 22:15:12 (4472): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 26 20:15 runtime_log
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas   3041280 May 26 20:15 result.tar.gz
2025-05-26 22:15:12 (4472): Guest Log: -rw-r--r--. 1 atlas atlas     10941 May 26 20:15 runtime_log.err
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas       662 May 26 20:15 GDFKDmL5Na7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5eNKDm6feTLm.diag
2025-05-26 22:15:12 (4472): Guest Log: Looking for outputfile HITS.44638099._049867.pool.root.1
2025-05-26 22:15:12 (4472): Guest Log: HITS file was successfully produced
2025-05-26 22:15:12 (4472): Guest Log: -rw-------. 1 atlas atlas 198831733 May 26 20:13 /home/atlas/RunAtlas/HITS.44638099._049867.pool.root.1
2025-05-26 22:15:14 (4472): Guest Log: Successfully finished the ATLAS job!
2025-05-26 22:15:14 (4472): Guest Log: Copying the results back to the shared directory!
2025-05-26 22:15:14 (4472): Guest Log:  *** Contents of shared directory: ***
2025-05-26 22:15:14 (4472): Guest Log: total 415572
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root 223124094 May 26 11:11 ATLAS.root_0
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root 198831733 May 26 20:15 HITS.pool.root.1
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root      9141 May 26 11:11 init_data.xml
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root    508875 May 24 06:43 input.tar.gz
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root   3041280 May 26 20:15 result.tar.gz
2025-05-26 22:15:14 (4472): Guest Log: -rwxrwxrwx. 1 root root     17569 May 24 06:43 start_atlas.sh
2025-05-26 22:15:14 (4472): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-26 22:15:14 (4472): VM Completion File Detected.
2025-05-26 22:15:14 (4472): Powering off VM.
2025-05-26 22:15:15 (4472): Successfully stopped VM.
2025-05-26 22:15:15 (4472): Deregistering VM. (boinc_b16aa3a322b53f2a, slot#3)
2025-05-26 22:15:15 (4472): Removing network bandwidth throttle group from VM.
2025-05-26 22:15:15 (4472): Removing VM from VirtualBox.
22:15:21 (4472): called boinc_finish(0)

</stderr_txt>
]]>

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