Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-24 02:27:57 (4444): Detected: vboxwrapper 26206
2025-05-24 02:27:57 (4444): Detected: BOINC client v8.0.4
2025-05-24 02:27:57 (4444): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-24 02:27:57 (4444): Successfully copied 'init_data.xml' to the shared directory.
2025-05-24 02:27:58 (4444): Create VM. (boinc_c57b3e544eb0074c, slot#1)
2025-05-24 02:27:58 (4444): Setting Memory Size for VM. (4400MB)
2025-05-24 02:27:59 (4444): Setting CPU Count for VM. (4)
2025-05-24 02:27:59 (4444): Setting Chipset Options for VM.
2025-05-24 02:27:59 (4444): Setting Graphics Controller Options for VM.
2025-05-24 02:27:59 (4444): Setting Boot Options for VM.
2025-05-24 02:28:00 (4444): Setting Network Configuration for NAT.
2025-05-24 02:28:00 (4444): Enabling VM Network Access.
2025-05-24 02:28:00 (4444): Disabling USB Support for VM.
2025-05-24 02:28:00 (4444): Disabling COM Port Support for VM.
2025-05-24 02:28:01 (4444): Disabling LPT Port Support for VM.
2025-05-24 02:28:01 (4444): Disabling Audio Support for VM.
2025-05-24 02:28:01 (4444): Disabling Clipboard Support for VM.
2025-05-24 02:28:02 (4444): Disabling Drag and Drop Support for VM.
2025-05-24 02:28:02 (4444): Adding storage controller(s) to VM.
2025-05-24 02:28:02 (4444): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-24 02:28:03 (4444): Adding VirtualBox Guest Additions to VM.
2025-05-24 02:28:03 (4444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-24 02:28:03 (4444): forwarding host port 57382 to guest port 80
2025-05-24 02:28:03 (4444): Enabling remote desktop for VM.
2025-05-24 02:28:04 (4444): Required extension pack not installed, remote desktop not enabled.
2025-05-24 02:28:04 (4444): Enabling shared directory for VM.
2025-05-24 02:28:04 (4444): Starting VM using VBoxManage interface. (boinc_c57b3e544eb0074c, slot#1)
2025-05-24 02:28:09 (4444): Successfully started VM. (PID = '856')
2025-05-24 02:28:09 (4444): Reporting VM Process ID to BOINC.
2025-05-24 02:28:09 (4444): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-24 02:28:09 (4444): Guest Log: CPUID EDX: 0x178bfbff
2025-05-24 02:28:09 (4444): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-24 02:28:09 (4444): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-24 02:28:09 (4444): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-24 02:28:09 (4444): Detected: Web Application Enabled (http://localhost:57382)
2025-05-24 02:28:09 (4444): Preference change detected
2025-05-24 02:28:09 (4444): Setting CPU throttle for VM. (80%)
2025-05-24 02:28:09 (4444): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-24 02:28:11 (4444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-24 02:28:11 (4444): Guest Log: BIOS: Booting from Hard Disk...
2025-05-24 02:28:14 (4444): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-24 02:28:14 (4444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-24 02:28:14 (4444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-24 02:28:29 (4444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-24 02:28:29 (4444): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-24 02:28:46 (4444): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000160 main     Log opened 2025-05-24T02:28:44.953991000Z
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000257 main     OS Product: Linux
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000296 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000324 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000370 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000371 main     Process ID: 1300
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.000371 main     Package type: LINUX_64BITS_GENERIC
2025-05-24 02:28:46 (4444): Guest Log: 00:00:00.001065 main     5.2.32 r132073 started. Verbose level = 0
2025-05-24 02:28:46 (4444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-24 02:28:46 (4444): Guest Log: [INFO] Mounting shared directory
2025-05-24 02:28:46 (4444): Guest Log: [INFO] Checking for init_data.xml
2025-05-24 02:28:50 (4444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-24 02:28:50 (4444): Guest Log: [INFO] Detected branch: prod
2025-05-24 02:28:51 (4444): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-24 02:28:51 (4444): Guest Log: Copying input files
2025-05-24 02:28:53 (4444): Guest Log: Copied input files into RunAtlas.
2025-05-24 02:28:53 (4444): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-24 02:28:53 (4444): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-24 02:28:53 (4444): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-24 02:28:53 (4444): Guest Log: Further information can be found at the LHC@home message board.
2025-05-24 02:28:56 (4444): Guest Log: 00:00:10.066660 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 941 713 000ns (GuestNow=1 748 068 135 900 063 000 ns GuestLast=1 748 053 724 958 350 000 ns fSetTimeLastLoop=true )
2025-05-24 02:29:01 (4444): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-24 02:29:01 (4444): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-24 02:29:01 (4444): Guest Log: 2.6.3.0 1578 0 30136 146358 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-24 02:29:02 (4444): Guest Log: copied the webapp to /var/www
2025-05-24 02:29:02 (4444): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-24 02:29:02 (4444): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-24 02:29:03 (4444): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-24 02:29:03 (4444): Guest Log:  *** Starting ATLAS job. (PandaID=6665270760 taskID=44871837) ***
2025-05-24 04:08:13 (4444): Status Report: Elapsed Time: '6000.000000'
2025-05-24 04:08:13 (4444): Status Report: CPU Time: '12092.171875'
2025-05-24 05:48:16 (4444): Status Report: Elapsed Time: '12000.000000'
2025-05-24 05:48:16 (4444): Status Report: CPU Time: '24439.359375'
2025-05-24 07:28:20 (4444): Status Report: Elapsed Time: '18000.000000'
2025-05-24 07:28:20 (4444): Status Report: CPU Time: '36768.515625'
2025-05-24 09:08:24 (4444): Status Report: Elapsed Time: '24000.000000'
2025-05-24 09:08:24 (4444): Status Report: CPU Time: '48685.953125'
2025-05-24 09:08:42 (4444): Guest Log:  *** Job finished ***
2025-05-24 09:08:42 (4444): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:31,348 | INFO     | [data] copytool_out thread has finished
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:32,245 | INFO     | [job] queue monitor thread has finished
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:32,971 | INFO     | [data] queue_monitor thread has finished
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:33,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740079908672)>', '<ExcThread(monitor, started 139739470472960)>']
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:33,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:33,975 | INFO     | [monitor] control thread has ended
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:38,858 | INFO     | all workflow threads have been joined
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:38,858 | INFO     | end of generic workflow (traces error code: 0)
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:38,858 | INFO     | traces error code: 0
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:38,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:39,084 [wrapper] ==== pilot stdout END ====
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:39,131 [wrapper] ==== wrapper stdout RESUME ====
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:39,156 [wrapper] pilotpid: 5888
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:39,161 [wrapper] Pilot exit status: 0
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:39,542 [wrapper] pandaids: 6665270760
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:40,155 [wrapper] cleanup supervisor_pilot 24126 5889
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:40,237 [wrapper] Test setup, not cleaning
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:40,299 [wrapper] apfmon messages muted
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:40,413 [wrapper] ==== wrapper stdout END ====
2025-05-24 09:08:42 (4444): Guest Log: 2025-05-24 13:08:40,423 [wrapper] ==== wrapper stderr END ====
2025-05-24 09:08:42 (4444): Guest Log:  *** Error codes and diagnostics ***
2025-05-24 09:08:42 (4444): Guest Log:     "exeErrorCode": 0,
2025-05-24 09:08:42 (4444): Guest Log:     "exeErrorDiag": "",
2025-05-24 09:08:42 (4444): Guest Log:     "pilotErrorCode": 0,
2025-05-24 09:08:42 (4444): Guest Log:     "pilotErrorDiag": "",
2025-05-24 09:08:42 (4444): Guest Log:  *** Listing of results directory ***
2025-05-24 09:08:42 (4444): Guest Log: total 198848
2025-05-24 09:08:42 (4444): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 24 05:59 pilot3.tar.gz
2025-05-24 09:08:42 (4444): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 24 06:00 queuedata.json
2025-05-24 09:08:42 (4444): Guest Log: -rwx------. 1 atlas atlas     37140 May 24 06:01 runpilot2-wrapper.sh
2025-05-24 09:08:42 (4444): Guest Log: -rwxr-xr-x. 1 atlas atlas     11055 May 24 06:28 init_data.xml
2025-05-24 09:08:42 (4444): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 May 24 06:28 input.tar.gz
2025-05-24 09:08:42 (4444): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 24 06:28 start_atlas.sh
2025-05-24 09:08:42 (4444): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 24 06:28 EVNT.44871834._000272.pool.root.1 -> /data/./ATLAS.root_0
2025-05-24 09:08:42 (4444): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May 24 06:29 pandaJob.out
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas    988604 May 24 06:29 agis_schedconf.cvmfs.json
2025-05-24 09:08:42 (4444): Guest Log: drwx------. 4 atlas atlas      4096 May 24 06:29 pilot3
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas 195862536 May 24 13:05 HITS.44871837._006781.pool.root.1
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas      1028 May 24 13:06 memory_monitor_summary.json
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas   1596740 May 24 13:06 agis_ddmendpoints.agis.ALL.json
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas    367162 May 24 13:06 log.44871837._006781.job.log.tgz.1
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas        95 May 24 13:07 pilot_heartbeat.json
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas      7714 May 24 13:08 heartbeat.json
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas      4413 May 24 13:08 pilotlog.txt
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas   1629541 May 24 13:08 log.44871837._006781.job.log.1
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas       357 May 24 13:08 output.list
2025-05-24 09:08:42 (4444): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 24 13:08 runtime_log
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas   2017280 May 24 13:08 result.tar.gz
2025-05-24 09:08:42 (4444): Guest Log: -rw-r--r--. 1 atlas atlas      8560 May 24 13:08 runtime_log.err
2025-05-24 09:08:42 (4444): Guest Log: -rw-------. 1 atlas atlas       648 May 24 13:08 Mr4MDmP8wc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpfPKDmuFYYBo.diag
2025-05-24 09:08:43 (4444): Guest Log: Looking for outputfile HITS.44871837._006781.pool.root.1
2025-05-24 09:08:43 (4444): Guest Log: HITS file was successfully produced
2025-05-24 09:08:43 (4444): Guest Log: -rw-------. 1 atlas atlas 195862536 May 24 13:05 /home/atlas/RunAtlas/HITS.44871837._006781.pool.root.1
2025-05-24 09:08:48 (4444): Guest Log: Successfully finished the ATLAS job!
2025-05-24 09:08:48 (4444): Guest Log: Copying the results back to the shared directory!
2025-05-24 09:08:48 (4444): Guest Log:  *** Contents of shared directory: ***
2025-05-24 09:08:48 (4444): Guest Log: total 414140
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root 225649593 May 24 06:27 ATLAS.root_0
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root 195862536 May 24 13:08 HITS.pool.root.1
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root     11055 May 24 06:27 init_data.xml
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root    508874 May 24 06:27 input.tar.gz
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root   2017280 May 24 13:08 result.tar.gz
2025-05-24 09:08:48 (4444): Guest Log: -rwxrwxrwx. 1 root root     15093 May 24 06:27 start_atlas.sh
2025-05-24 09:08:48 (4444): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-24 09:08:48 (4444): VM Completion File Detected.
2025-05-24 09:08:48 (4444): Powering off VM.
2025-05-24 09:08:49 (4444): Successfully stopped VM.
2025-05-24 09:08:49 (4444): Deregistering VM. (boinc_c57b3e544eb0074c, slot#1)
2025-05-24 09:08:49 (4444): Removing network bandwidth throttle group from VM.
2025-05-24 09:08:49 (4444): Removing VM from VirtualBox.
09:08:55 (4444): called boinc_finish(0)

</stderr_txt>
]]>

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