Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
10:40:41 (3590127): wrapper (7.7.26015): starting
10:40:41 (3590127): wrapper: running run_atlas (--nthreads 4)
[2025-05-24 10:40:41] Arguments: --nthreads 4
[2025-05-24 10:40:41] Threads: 4
[2025-05-24 10:40:41] Checking for CVMFS
[2025-05-24 10:40:41] No cvmfs_config command found, will try listing directly
[2025-05-24 10:40:41] CVMFS is ok
[2025-05-24 10:40:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 10:40:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 10:40:41] Further information can be found at the LHC@home message board.
[2025-05-24 10:40:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 10:40:41] Checking for apptainer binary...
[2025-05-24 10:40:41] which: no apptainer in ((null))
[2025-05-24 10:40:41] apptainer is not installed, using version from CVMFS
[2025-05-24 10:40:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 10:40:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-05-24 10:40:41] apptainer works
[2025-05-24 10:40:41] Set ATHENA_PROC_NUMBER=4
[2025-05-24 10:40:41] Set ATHENA_CORE_NUMBER=4
[2025-05-24 10:40:41] Starting ATLAS job with PandaID=6665150327
[2025-05-24 10:40:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot4/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:39:18 (3922059): wrapper (7.7.26015): starting
14:39:18 (3922059): wrapper: running run_atlas (--nthreads 4)
[2025-05-24 14:39:18] Arguments: --nthreads 4
[2025-05-24 14:39:18] Threads: 4
[2025-05-24 14:39:18] This job has been restarted, cleaning up previous attempt
[2025-05-24 14:39:18] Checking for CVMFS
[2025-05-24 14:39:18] No cvmfs_config command found, will try listing directly
[2025-05-24 14:39:18] CVMFS is ok
[2025-05-24 14:39:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 14:39:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 14:39:18] Further information can be found at the LHC@home message board.
[2025-05-24 14:39:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 14:39:18] Checking for apptainer binary...
[2025-05-24 14:39:18] which: no apptainer in ((null))
[2025-05-24 14:39:18] apptainer is not installed, using version from CVMFS
[2025-05-24 14:39:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 14:39:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-05-24 14:39:18] apptainer works
[2025-05-24 14:39:18] Set ATHENA_PROC_NUMBER=4
[2025-05-24 14:39:18] Set ATHENA_CORE_NUMBER=4
[2025-05-24 14:39:18] Starting ATLAS job with PandaID=6665150327
[2025-05-24 14:39:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot4/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 14:42:25] Job failed
[2025-05-24 14:42:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 14:42:25] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 14:42:25] + mv ATLAS.root_0 EVNT.44871834._000105.pool.root.1
[2025-05-24 14:42:25] mv: 'ATLAS.root_0' and 'EVNT.44871834._000105.pool.root.1' are the same file
[2025-05-24 14:42:25] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-24 14:42:25] + umask 077
[2025-05-24 14:42:25] ++ date +%s
[2025-05-24 14:42:25] + ACCOUNTING_STARTTIME=1748090359
[2025-05-24 14:42:25] + echo 'Detecting resource accounting method available for the job.'
[2025-05-24 14:42:25] Detecting resource accounting method available for the job.
[2025-05-24 14:42:25] + JOB_ACCOUNTING=
[2025-05-24 14:42:25] + command -v arc-job-cgroup
[2025-05-24 14:42:25] + '[' -z '' ']'
[2025-05-24 14:42:25] + GNU_TIME=/usr/bin/time
[2025-05-24 14:42:25] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-24 14:42:25] Looking for /usr/bin/time tool for accounting measurements
[2025-05-24 14:42:25] + '[' '!' -z /usr/bin/time ']'
[2025-05-24 14:42:25] + /usr/bin/time --version
[2025-05-24 14:42:25] + echo 'GNU time found and will be used for job accounting.'
[2025-05-24 14:42:25] GNU time found and will be used for job accounting.
[2025-05-24 14:42:25] + JOB_ACCOUNTING=gnutime
[2025-05-24 14:42:25] + '[' -z gnutime ']'
[2025-05-24 14:42:25] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 14:42:25] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 14:42:25] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 14:42:25] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 14:42:25] + export PILOT_NOKILL=YES
[2025-05-24 14:42:25] + PILOT_NOKILL=YES
[2025-05-24 14:42:25] + export GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 14:42:25] + GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 14:42:25] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 14:42:25] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 14:42:25] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 14:42:25] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 14:42:25] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 14:42:25] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot4/slots/1
[2025-05-24 14:42:25] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1.diag
[2025-05-24 14:42:25] + '[' '!' -z '' ']'
[2025-05-24 14:42:25] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-24 14:42:25] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-24 14:42:25] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-24 14:42:25] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-24 14:42:25] + '[' '!' -z '' ']'
[2025-05-24 14:42:25] + '[' -z yes ']'
[2025-05-24 14:42:25] ++ pwd
[2025-05-24 14:42:25] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 14:42:25] + runtimeenvironments=
[2025-05-24 14:42:25] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 14:42:25] + RTE_function_0 1
[2025-05-24 14:42:25] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 14:42:25] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 14:42:25] + export BOINC_APP=ATLAS
[2025-05-24 14:42:25] + BOINC_APP=ATLAS
[2025-05-24 14:42:25] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 14:42:25] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 14:42:25] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 14:42:25] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 14:42:25] + '[' -z 1 ']'
[2025-05-24 14:42:25] + '[' 1 == 1 ']'
[2025-05-24 14:42:25] + shift
[2025-05-24 14:42:25] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 14:42:25] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 14:42:25] + '[' 0 -ne 0 ']'
[2025-05-24 14:42:25] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-24 14:42:25] + '[' -f /etc/os-release ']'
[2025-05-24 14:42:25] +++ cat /etc/os-release
[2025-05-24 14:42:25] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-24 14:42:25] +++ NAME='CentOS Linux'
[2025-05-24 14:42:25] +++ VERSION='7 (Core)'
[2025-05-24 14:42:25] +++ ID=centos
[2025-05-24 14:42:25] +++ ID_LIKE='rhel fedora'
[2025-05-24 14:42:25] +++ VERSION_ID=7
[2025-05-24 14:42:25] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-24 14:42:25] +++ ANSI_COLOR='0;31'
[2025-05-24 14:42:25] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-24 14:42:25] +++ HOME_URL=https://www.centos.org/
[2025-05-24 14:42:25] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-24 14:42:25] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-24 14:42:25] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-24 14:42:25] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-24 14:42:25] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-24 14:42:25] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-24 14:42:25] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-24 14:42:25] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-24 14:42:25] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-24 14:42:25] + HOME=/scratch/boinc/var/slot4/slots/1
[2025-05-24 14:42:25] + export HOME
[2025-05-24 14:42:25] + cd /scratch/boinc/var/slot4/slots/1
[2025-05-24 14:42:25] + '[' '!' -z '' ']'
[2025-05-24 14:42:25] + '[' -z '' ']'
[2025-05-24 14:42:25] ++ /bin/hostname -f
[2025-05-24 14:42:25] + nodename=ugluk10.grid.cesnet.cz
[2025-05-24 14:42:25] + echo nodename=ugluk10.grid.cesnet.cz
[2025-05-24 14:42:25] + echo Processors=2
[2025-05-24 14:42:25] + echo Nodecount=1
[2025-05-24 14:42:25] + echo Benchmark=HEPSPEC:1.0
[2025-05-24 14:42:25] + executable=./runpilot2-wrapper.sh
[2025-05-24 14:42:25] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-24 14:42:25] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-24 14:42:25] ++ head -n 1
[2025-05-24 14:42:25] ++ tr -d '\0'
[2025-05-24 14:42:25] + line1='#!/bin/bash'
[2025-05-24 14:42:25] ++ echo '#!/bin/bash'
[2025-05-24 14:42:25] ++ sed -n 's/^#! *//p'
[2025-05-24 14:42:25] + shebang=/bin/bash
[2025-05-24 14:42:25] ++ echo /bin/bash
[2025-05-24 14:42:25] ++ awk '{print $1}'
[2025-05-24 14:42:25] + interpreter=/bin/bash
[2025-05-24 14:42:25] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-24 14:42:25] + '[' x/bin/bash = x ']'
[2025-05-24 14:42:25] + type /bin/bash
[2025-05-24 14:42:25] + '[' xgnutime = xgnutime ']'
[2025-05-24 14:42:25] + /usr/bin/time -o /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-24 14:42:25] + RESULT=2
[2025-05-24 14:42:25] + sed -i -e /nodename=/d /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 14:42:25] ++ grep domain_name init_data.xml
[2025-05-24 14:42:25] ++ awk -F '<' '{print $1}'
[2025-05-24 14:42:25] ++ awk -F '>' '{print $2}'
[2025-05-24 14:42:25] ++ sed -e 's# #_#g'
[2025-05-24 14:42:25] + hostname=ugluk10.grid.cesnet.cz
[2025-05-24 14:42:25] ++ grep user_name init_data.xml
[2025-05-24 14:42:25] ++ awk -F '>' '{print $2}'
[2025-05-24 14:42:25] ++ sed -e 's# #_#g'
[2025-05-24 14:42:25] ++ awk -F '<' '{print $1}'
[2025-05-24 14:42:25] + username=praguelcg2
[2025-05-24 14:42:25] + nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 14:42:25] + echo nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 14:42:25] + '[' -n 4 ']'
[2025-05-24 14:42:25] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 14:42:25] + echo exitcode=2
[2025-05-24 14:42:25] + runtimeenvironments=
[2025-05-24 14:42:25] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 14:42:25] + RTE_function_0 2
[2025-05-24 14:42:25] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 14:42:25] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 14:42:25] + export BOINC_APP=ATLAS
[2025-05-24 14:42:25] + BOINC_APP=ATLAS
[2025-05-24 14:42:25] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 14:42:25] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 14:42:25] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 14:42:25] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 14:42:25] + '[' -z 2 ']'
[2025-05-24 14:42:25] + '[' 2 == 1 ']'
[2025-05-24 14:42:25] + '[' 0 -ne 0 ']'
[2025-05-24 14:42:25] + echo 'zip all output files'
[2025-05-24 14:42:25] + flist='*.diag '
[2025-05-24 14:42:25] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 14:42:25] + '[' -e ./heartbeat.json ']'
[2025-05-24 14:42:25] + flist='*.diag  ./heartbeat.json'
[2025-05-24 14:42:25] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 14:42:25] + '[' -e ./output.list ']'
[2025-05-24 14:42:25] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 14:42:25] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 14:42:25] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1'
[2025-05-24 14:42:25] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 14:42:25] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 14:42:25] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1'
[2025-05-24 14:42:25] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 14:42:25] + '[' -e ./gmlog/ ']'
[2025-05-24 14:42:25] + '[' -f output.list ']'
[2025-05-24 14:42:25] + tar cvf result.tar.gz LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1
[2025-05-24 14:42:25] + '[' xgnutime = xcgroup ']'
[2025-05-24 14:42:25] + '[' -n '' ']'
[2025-05-24 14:42:25] + '[' -n '' ']'
[2025-05-24 14:42:25] ++ date +%s
[2025-05-24 14:42:25] + ACCOUNTING_ENDTIME=1748090545
[2025-05-24 14:42:25] ++ date -d '1970-01-01 UTC 1748090359 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 14:42:25] + echo LRMSStartTime=20250524143919Z
[2025-05-24 14:42:25] ++ date -d '1970-01-01 UTC 1748090545 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 14:42:25] + echo LRMSEndTime=20250524144225Z
[2025-05-24 14:42:25] + echo walltime=186
[2025-05-24 14:42:25] + echo exitcode=2
[2025-05-24 14:42:25] + exit 2
[2025-05-24 14:42:25] ./pilotlog.txt
[2025-05-24 14:42:25] ./runtime_log.err
[2025-05-24 14:42:25] ./log.44871837._002617.job.log.1
[2025-05-24 14:42:25] ./runtime_log
[2025-05-24 14:42:25] ./pilot3/pilot/util/realtimelogger.py
[2025-05-24 14:42:25] ./pilot3/pilot/util/loggingsupport.py
[2025-05-24 14:42:25] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-24 14:42:25] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-24 14:42:25] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-24 14:42:25] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-24 14:42:25] ./PanDA_Pilot-6665150327/log.EVNTtoHITS
[2025-05-24 14:42:25] ./PanDA_Pilot-6665150327/pilotlog.txt
[2025-05-24 14:42:25] ./PanDA_Pilot-6665150327/prmon.log
[2025-05-24 14:42:25] ./PanDA_Pilot-6665150327/PoolFileCatalog.xml
16:47:25 (4115563): wrapper (7.7.26015): starting
16:47:25 (4115563): wrapper: running run_atlas (--nthreads 4)
[2025-05-24 16:47:25] Arguments: --nthreads 4
[2025-05-24 16:47:25] Threads: 4
[2025-05-24 16:47:25] This job has been restarted, cleaning up previous attempt
[2025-05-24 16:47:25] Checking for CVMFS
[2025-05-24 16:47:25] No cvmfs_config command found, will try listing directly
[2025-05-24 16:47:25] CVMFS is ok
[2025-05-24 16:47:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 16:47:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 16:47:25] Further information can be found at the LHC@home message board.
[2025-05-24 16:47:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 16:47:25] Checking for apptainer binary...
[2025-05-24 16:47:25] which: no apptainer in ((null))
[2025-05-24 16:47:25] apptainer is not installed, using version from CVMFS
[2025-05-24 16:47:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 16:47:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-05-24 16:47:26] apptainer works
[2025-05-24 16:47:26] Set ATHENA_PROC_NUMBER=4
[2025-05-24 16:47:26] Set ATHENA_CORE_NUMBER=4
[2025-05-24 16:47:26] Starting ATLAS job with PandaID=6665150327
[2025-05-24 16:47:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot4/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 16:50:37] Job failed
[2025-05-24 16:50:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 16:50:37] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 16:50:37] + mv ATLAS.root_0 EVNT.44871834._000105.pool.root.1
[2025-05-24 16:50:37] mv: 'ATLAS.root_0' and 'EVNT.44871834._000105.pool.root.1' are the same file
[2025-05-24 16:50:37] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-24 16:50:37] + umask 077
[2025-05-24 16:50:37] ++ date +%s
[2025-05-24 16:50:37] + ACCOUNTING_STARTTIME=1748098046
[2025-05-24 16:50:37] + echo 'Detecting resource accounting method available for the job.'
[2025-05-24 16:50:37] Detecting resource accounting method available for the job.
[2025-05-24 16:50:37] + JOB_ACCOUNTING=
[2025-05-24 16:50:37] + command -v arc-job-cgroup
[2025-05-24 16:50:37] + '[' -z '' ']'
[2025-05-24 16:50:37] + GNU_TIME=/usr/bin/time
[2025-05-24 16:50:37] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-24 16:50:37] Looking for /usr/bin/time tool for accounting measurements
[2025-05-24 16:50:37] + '[' '!' -z /usr/bin/time ']'
[2025-05-24 16:50:37] + /usr/bin/time --version
[2025-05-24 16:50:37] + echo 'GNU time found and will be used for job accounting.'
[2025-05-24 16:50:37] GNU time found and will be used for job accounting.
[2025-05-24 16:50:37] + JOB_ACCOUNTING=gnutime
[2025-05-24 16:50:37] + '[' -z gnutime ']'
[2025-05-24 16:50:37] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 16:50:37] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 16:50:37] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 16:50:37] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 16:50:37] + export PILOT_NOKILL=YES
[2025-05-24 16:50:37] + PILOT_NOKILL=YES
[2025-05-24 16:50:37] + export GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 16:50:37] + GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 16:50:37] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 16:50:37] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 16:50:37] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 16:50:37] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 16:50:37] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 16:50:37] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot4/slots/1
[2025-05-24 16:50:37] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1.diag
[2025-05-24 16:50:37] + '[' '!' -z '' ']'
[2025-05-24 16:50:37] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-24 16:50:37] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-24 16:50:37] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-24 16:50:37] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-24 16:50:37] + '[' '!' -z '' ']'
[2025-05-24 16:50:37] + '[' -z yes ']'
[2025-05-24 16:50:37] ++ pwd
[2025-05-24 16:50:37] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 16:50:37] + runtimeenvironments=
[2025-05-24 16:50:37] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 16:50:37] + RTE_function_0 1
[2025-05-24 16:50:37] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 16:50:37] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 16:50:37] + export BOINC_APP=ATLAS
[2025-05-24 16:50:37] + BOINC_APP=ATLAS
[2025-05-24 16:50:37] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 16:50:37] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 16:50:37] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 16:50:37] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 16:50:37] + '[' -z 1 ']'
[2025-05-24 16:50:37] + '[' 1 == 1 ']'
[2025-05-24 16:50:37] + shift
[2025-05-24 16:50:37] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 16:50:37] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 16:50:37] + '[' 0 -ne 0 ']'
[2025-05-24 16:50:37] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-24 16:50:37] + '[' -f /etc/os-release ']'
[2025-05-24 16:50:37] +++ cat /etc/os-release
[2025-05-24 16:50:37] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-24 16:50:37] +++ NAME='CentOS Linux'
[2025-05-24 16:50:37] +++ VERSION='7 (Core)'
[2025-05-24 16:50:37] +++ ID=centos
[2025-05-24 16:50:37] +++ ID_LIKE='rhel fedora'
[2025-05-24 16:50:37] +++ VERSION_ID=7
[2025-05-24 16:50:37] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-24 16:50:37] +++ ANSI_COLOR='0;31'
[2025-05-24 16:50:37] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-24 16:50:37] +++ HOME_URL=https://www.centos.org/
[2025-05-24 16:50:37] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-24 16:50:37] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-24 16:50:37] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-24 16:50:37] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-24 16:50:37] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-24 16:50:37] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-24 16:50:37] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-24 16:50:37] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-24 16:50:37] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-24 16:50:37] + HOME=/scratch/boinc/var/slot4/slots/1
[2025-05-24 16:50:37] + export HOME
[2025-05-24 16:50:37] + cd /scratch/boinc/var/slot4/slots/1
[2025-05-24 16:50:37] + '[' '!' -z '' ']'
[2025-05-24 16:50:37] + '[' -z '' ']'
[2025-05-24 16:50:37] ++ /bin/hostname -f
[2025-05-24 16:50:37] + nodename=ugluk10.grid.cesnet.cz
[2025-05-24 16:50:37] + echo nodename=ugluk10.grid.cesnet.cz
[2025-05-24 16:50:37] + echo Processors=2
[2025-05-24 16:50:37] + echo Nodecount=1
[2025-05-24 16:50:37] + echo Benchmark=HEPSPEC:1.0
[2025-05-24 16:50:37] + executable=./runpilot2-wrapper.sh
[2025-05-24 16:50:37] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-24 16:50:37] ++ head -n 1
[2025-05-24 16:50:37] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-24 16:50:37] ++ tr -d '\0'
[2025-05-24 16:50:37] + line1='#!/bin/bash'
[2025-05-24 16:50:37] ++ sed -n 's/^#! *//p'
[2025-05-24 16:50:37] ++ echo '#!/bin/bash'
[2025-05-24 16:50:37] + shebang=/bin/bash
[2025-05-24 16:50:37] ++ echo /bin/bash
[2025-05-24 16:50:37] ++ awk '{print $1}'
[2025-05-24 16:50:37] + interpreter=/bin/bash
[2025-05-24 16:50:37] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-24 16:50:37] + '[' x/bin/bash = x ']'
[2025-05-24 16:50:37] + type /bin/bash
[2025-05-24 16:50:37] + '[' xgnutime = xgnutime ']'
[2025-05-24 16:50:37] + /usr/bin/time -o /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-24 16:50:37] + RESULT=2
[2025-05-24 16:50:37] + sed -i -e /nodename=/d /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 16:50:37] ++ awk -F '<' '{print $1}'
[2025-05-24 16:50:37] ++ grep domain_name init_data.xml
[2025-05-24 16:50:37] ++ sed -e 's# #_#g'
[2025-05-24 16:50:37] ++ awk -F '>' '{print $2}'
[2025-05-24 16:50:37] + hostname=ugluk10.grid.cesnet.cz
[2025-05-24 16:50:37] ++ awk -F '>' '{print $2}'
[2025-05-24 16:50:37] ++ sed -e 's# #_#g'
[2025-05-24 16:50:37] ++ awk -F '<' '{print $1}'
[2025-05-24 16:50:37] ++ grep user_name init_data.xml
[2025-05-24 16:50:37] + username=praguelcg2
[2025-05-24 16:50:37] + nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 16:50:37] + echo nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 16:50:37] + '[' -n 4 ']'
[2025-05-24 16:50:37] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 16:50:37] + echo exitcode=2
[2025-05-24 16:50:37] + runtimeenvironments=
[2025-05-24 16:50:37] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 16:50:37] + RTE_function_0 2
[2025-05-24 16:50:37] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 16:50:37] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 16:50:37] + export BOINC_APP=ATLAS
[2025-05-24 16:50:37] + BOINC_APP=ATLAS
[2025-05-24 16:50:37] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 16:50:37] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 16:50:37] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 16:50:37] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 16:50:37] + '[' -z 2 ']'
[2025-05-24 16:50:37] + '[' 2 == 1 ']'
[2025-05-24 16:50:37] + '[' 0 -ne 0 ']'
[2025-05-24 16:50:37] + echo 'zip all output files'
[2025-05-24 16:50:37] + flist='*.diag '
[2025-05-24 16:50:37] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 16:50:37] + '[' -e ./heartbeat.json ']'
[2025-05-24 16:50:37] + flist='*.diag  ./heartbeat.json'
[2025-05-24 16:50:37] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 16:50:37] + '[' -e ./output.list ']'
[2025-05-24 16:50:37] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 16:50:37] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 16:50:37] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1'
[2025-05-24 16:50:37] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 16:50:37] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 16:50:37] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1'
[2025-05-24 16:50:37] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 16:50:37] + '[' -e ./gmlog/ ']'
[2025-05-24 16:50:37] + '[' -f output.list ']'
[2025-05-24 16:50:37] + tar cvf result.tar.gz LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1
[2025-05-24 16:50:37] + '[' xgnutime = xcgroup ']'
[2025-05-24 16:50:37] + '[' -n '' ']'
[2025-05-24 16:50:37] + '[' -n '' ']'
[2025-05-24 16:50:37] ++ date +%s
[2025-05-24 16:50:37] + ACCOUNTING_ENDTIME=1748098236
[2025-05-24 16:50:37] ++ date -d '1970-01-01 UTC 1748098046 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 16:50:37] + echo LRMSStartTime=20250524164726Z
[2025-05-24 16:50:37] ++ date -d '1970-01-01 UTC 1748098236 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 16:50:37] + echo LRMSEndTime=20250524165036Z
[2025-05-24 16:50:37] + echo walltime=190
[2025-05-24 16:50:37] + echo exitcode=2
[2025-05-24 16:50:37] + exit 2
[2025-05-24 16:50:37] ./pilotlog.txt
[2025-05-24 16:50:37] ./runtime_log.err
[2025-05-24 16:50:37] ./log.44871837._002617.job.log.1
[2025-05-24 16:50:37] ./runtime_log
[2025-05-24 16:50:37] ./pilot3/pilot/util/realtimelogger.py
[2025-05-24 16:50:37] ./pilot3/pilot/util/loggingsupport.py
[2025-05-24 16:50:37] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-24 16:50:37] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-24 16:50:37] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-24 16:50:37] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-24 16:50:37] ./PanDA_Pilot-6665150327/log.EVNTtoHITS
[2025-05-24 16:50:37] ./PanDA_Pilot-6665150327/pilotlog.txt
[2025-05-24 16:50:37] ./PanDA_Pilot-6665150327/prmon.log
[2025-05-24 16:50:37] ./PanDA_Pilot-6665150327/PoolFileCatalog.xml
18:11:02 (31960): wrapper (7.7.26015): starting
18:11:02 (31960): wrapper: running run_atlas (--nthreads 4)
[2025-05-24 18:11:02] Arguments: --nthreads 4
[2025-05-24 18:11:02] Threads: 4
[2025-05-24 18:11:02] This job has been restarted, cleaning up previous attempt
[2025-05-24 18:11:02] Checking for CVMFS
[2025-05-24 18:11:02] No cvmfs_config command found, will try listing directly
[2025-05-24 18:11:02] CVMFS is ok
[2025-05-24 18:11:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 18:11:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 18:11:02] Further information can be found at the LHC@home message board.
[2025-05-24 18:11:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 18:11:02] Checking for apptainer binary...
[2025-05-24 18:11:02] which: no apptainer in ((null))
[2025-05-24 18:11:02] apptainer is not installed, using version from CVMFS
[2025-05-24 18:11:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 18:11:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-05-24 18:11:03] apptainer works
[2025-05-24 18:11:03] Set ATHENA_PROC_NUMBER=4
[2025-05-24 18:11:03] Set ATHENA_CORE_NUMBER=4
[2025-05-24 18:11:03] Starting ATLAS job with PandaID=6665150327
[2025-05-24 18:11:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot4/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 18:14:38] Job failed
[2025-05-24 18:14:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot4/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 18:14:38] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 18:14:38] + mv ATLAS.root_0 EVNT.44871834._000105.pool.root.1
[2025-05-24 18:14:38] mv: 'ATLAS.root_0' and 'EVNT.44871834._000105.pool.root.1' are the same file
[2025-05-24 18:14:38] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-24 18:14:38] + umask 077
[2025-05-24 18:14:38] ++ date +%s
[2025-05-24 18:14:38] + ACCOUNTING_STARTTIME=1748103063
[2025-05-24 18:14:38] + echo 'Detecting resource accounting method available for the job.'
[2025-05-24 18:14:38] Detecting resource accounting method available for the job.
[2025-05-24 18:14:38] + JOB_ACCOUNTING=
[2025-05-24 18:14:38] + command -v arc-job-cgroup
[2025-05-24 18:14:38] + '[' -z '' ']'
[2025-05-24 18:14:38] + GNU_TIME=/usr/bin/time
[2025-05-24 18:14:38] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-24 18:14:38] Looking for /usr/bin/time tool for accounting measurements
[2025-05-24 18:14:38] + '[' '!' -z /usr/bin/time ']'
[2025-05-24 18:14:38] + /usr/bin/time --version
[2025-05-24 18:14:38] + echo 'GNU time found and will be used for job accounting.'
[2025-05-24 18:14:38] GNU time found and will be used for job accounting.
[2025-05-24 18:14:38] + JOB_ACCOUNTING=gnutime
[2025-05-24 18:14:38] + '[' -z gnutime ']'
[2025-05-24 18:14:38] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 18:14:38] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-24 18:14:38] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 18:14:38] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-24/BOINC_MCORE/6665150327.out
[2025-05-24 18:14:38] + export PILOT_NOKILL=YES
[2025-05-24 18:14:38] + PILOT_NOKILL=YES
[2025-05-24 18:14:38] + export GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 18:14:38] + GRID_GLOBAL_JOBID=LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 18:14:38] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 18:14:38] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm
[2025-05-24 18:14:38] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 18:14:38] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-24 18:14:38] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 18:14:38] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot4/slots/1
[2025-05-24 18:14:38] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot4/slots/1/log.44871837._002617.job.log.1
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1.diag
[2025-05-24 18:14:38] + '[' '!' -z '' ']'
[2025-05-24 18:14:38] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-24 18:14:38] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-24 18:14:38] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-24 18:14:38] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-24 18:14:38] + '[' '!' -z '' ']'
[2025-05-24 18:14:38] + '[' -z yes ']'
[2025-05-24 18:14:38] ++ pwd
[2025-05-24 18:14:38] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 18:14:38] + runtimeenvironments=
[2025-05-24 18:14:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 18:14:38] + RTE_function_0 1
[2025-05-24 18:14:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 18:14:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 18:14:38] + export BOINC_APP=ATLAS
[2025-05-24 18:14:38] + BOINC_APP=ATLAS
[2025-05-24 18:14:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 18:14:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 18:14:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 18:14:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 18:14:38] + '[' -z 1 ']'
[2025-05-24 18:14:38] + '[' 1 == 1 ']'
[2025-05-24 18:14:38] + shift
[2025-05-24 18:14:38] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 18:14:38] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot4/slots/1/
[2025-05-24 18:14:38] + '[' 0 -ne 0 ']'
[2025-05-24 18:14:38] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-24 18:14:38] + '[' -f /etc/os-release ']'
[2025-05-24 18:14:38] +++ cat /etc/os-release
[2025-05-24 18:14:38] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-24 18:14:38] +++ NAME='CentOS Linux'
[2025-05-24 18:14:38] +++ VERSION='7 (Core)'
[2025-05-24 18:14:38] +++ ID=centos
[2025-05-24 18:14:38] +++ ID_LIKE='rhel fedora'
[2025-05-24 18:14:38] +++ VERSION_ID=7
[2025-05-24 18:14:38] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-24 18:14:38] +++ ANSI_COLOR='0;31'
[2025-05-24 18:14:38] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-24 18:14:38] +++ HOME_URL=https://www.centos.org/
[2025-05-24 18:14:38] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-24 18:14:38] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-24 18:14:38] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-24 18:14:38] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-24 18:14:38] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-24 18:14:38] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-24 18:14:38] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-24 18:14:38] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-24 18:14:38] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-24 18:14:38] + HOME=/scratch/boinc/var/slot4/slots/1
[2025-05-24 18:14:38] + export HOME
[2025-05-24 18:14:38] + cd /scratch/boinc/var/slot4/slots/1
[2025-05-24 18:14:38] + '[' '!' -z '' ']'
[2025-05-24 18:14:38] + '[' -z '' ']'
[2025-05-24 18:14:38] ++ /bin/hostname -f
[2025-05-24 18:14:38] + nodename=ugluk10.grid.cesnet.cz
[2025-05-24 18:14:38] + echo nodename=ugluk10.grid.cesnet.cz
[2025-05-24 18:14:38] + echo Processors=2
[2025-05-24 18:14:38] + echo Nodecount=1
[2025-05-24 18:14:38] + echo Benchmark=HEPSPEC:1.0
[2025-05-24 18:14:38] + executable=./runpilot2-wrapper.sh
[2025-05-24 18:14:38] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-24 18:14:38] ++ head -n 1
[2025-05-24 18:14:38] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-24 18:14:38] ++ tr -d '\0'
[2025-05-24 18:14:38] + line1='#!/bin/bash'
[2025-05-24 18:14:38] ++ sed -n 's/^#! *//p'
[2025-05-24 18:14:38] ++ echo '#!/bin/bash'
[2025-05-24 18:14:38] + shebang=/bin/bash
[2025-05-24 18:14:38] ++ awk '{print $1}'
[2025-05-24 18:14:38] ++ echo /bin/bash
[2025-05-24 18:14:38] + interpreter=/bin/bash
[2025-05-24 18:14:38] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-24 18:14:38] + '[' x/bin/bash = x ']'
[2025-05-24 18:14:38] + type /bin/bash
[2025-05-24 18:14:38] + '[' xgnutime = xgnutime ']'
[2025-05-24 18:14:38] + /usr/bin/time -o /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-24 18:14:38] + RESULT=2
[2025-05-24 18:14:38] + sed -i -e /nodename=/d /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 18:14:38] ++ grep domain_name init_data.xml
[2025-05-24 18:14:38] ++ sed -e 's# #_#g'
[2025-05-24 18:14:38] ++ awk -F '<' '{print $1}'
[2025-05-24 18:14:38] ++ awk -F '>' '{print $2}'
[2025-05-24 18:14:38] + hostname=ugluk10.grid.cesnet.cz
[2025-05-24 18:14:38] ++ awk -F '<' '{print $1}'
[2025-05-24 18:14:38] ++ grep user_name init_data.xml
[2025-05-24 18:14:38] ++ awk -F '>' '{print $2}'
[2025-05-24 18:14:38] ++ sed -e 's# #_#g'
[2025-05-24 18:14:38] + username=praguelcg2
[2025-05-24 18:14:38] + nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 18:14:38] + echo nodename=praguelcg2@ugluk10.grid.cesnet.cz
[2025-05-24 18:14:38] + '[' -n 4 ']'
[2025-05-24 18:14:38] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot4/slots/1/LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag
[2025-05-24 18:14:38] + echo exitcode=2
[2025-05-24 18:14:38] + runtimeenvironments=
[2025-05-24 18:14:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-24 18:14:38] + RTE_function_0 2
[2025-05-24 18:14:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 18:14:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-24 18:14:38] + export BOINC_APP=ATLAS
[2025-05-24 18:14:38] + BOINC_APP=ATLAS
[2025-05-24 18:14:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 18:14:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-24 18:14:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 18:14:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-24 18:14:38] + '[' -z 2 ']'
[2025-05-24 18:14:38] + '[' 2 == 1 ']'
[2025-05-24 18:14:38] + '[' 0 -ne 0 ']'
[2025-05-24 18:14:38] + echo 'zip all output files'
[2025-05-24 18:14:38] + flist='*.diag '
[2025-05-24 18:14:38] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 18:14:38] + '[' -e ./heartbeat.json ']'
[2025-05-24 18:14:38] + flist='*.diag  ./heartbeat.json'
[2025-05-24 18:14:38] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 18:14:38] + '[' -e ./output.list ']'
[2025-05-24 18:14:38] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 18:14:38] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 18:14:38] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1'
[2025-05-24 18:14:38] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 18:14:38] + '[' -e ./log.44871837._002617.job.log.1 ']'
[2025-05-24 18:14:38] + flist='*.diag  ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1'
[2025-05-24 18:14:38] + for f in ./heartbeat.json ./output.list ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1 ./gmlog/
[2025-05-24 18:14:38] + '[' -e ./gmlog/ ']'
[2025-05-24 18:14:38] + '[' -f output.list ']'
[2025-05-24 18:14:38] + tar cvf result.tar.gz LVaKDmPVvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN7KKDmlsHGjm.diag ./heartbeat.json ./log.44871837._002617.job.log.1 ./log.44871837._002617.job.log.1
[2025-05-24 18:14:38] + '[' xgnutime = xcgroup ']'
[2025-05-24 18:14:38] + '[' -n '' ']'
[2025-05-24 18:14:38] + '[' -n '' ']'
[2025-05-24 18:14:38] ++ date +%s
[2025-05-24 18:14:38] + ACCOUNTING_ENDTIME=1748103278
[2025-05-24 18:14:38] ++ date -d '1970-01-01 UTC 1748103063 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 18:14:38] + echo LRMSStartTime=20250524181103Z
[2025-05-24 18:14:38] ++ date -d '1970-01-01 UTC 1748103278 seconds' +%Y%m%d%H%M%SZ
[2025-05-24 18:14:38] + echo LRMSEndTime=20250524181438Z
[2025-05-24 18:14:38] + echo walltime=215
[2025-05-24 18:14:38] + echo exitcode=2
[2025-05-24 18:14:38] + exit 2
[2025-05-24 18:14:38] ./pilotlog.txt
[2025-05-24 18:14:38] ./runtime_log.err
[2025-05-24 18:14:38] ./log.44871837._002617.job.log.1
[2025-05-24 18:14:38] ./runtime_log
[2025-05-24 18:14:38] ./pilot3/pilot/util/realtimelogger.py
[2025-05-24 18:14:38] ./pilot3/pilot/util/loggingsupport.py
[2025-05-24 18:14:38] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-24 18:14:38] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-24 18:14:38] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-24 18:14:38] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-24 18:14:38] ./PanDA_Pilot-6665150327/log.EVNTtoHITS
[2025-05-24 18:14:38] ./PanDA_Pilot-6665150327/pilotlog.txt
[2025-05-24 18:14:38] ./PanDA_Pilot-6665150327/prmon.log
[2025-05-24 18:14:38] ./PanDA_Pilot-6665150327/PoolFileCatalog.xml
18:24:39 (31960): run_atlas exited; CPU time 18.736762
18:24:39 (31960): app exit status: 0x1
18:24:39 (31960): called boinc_finish(195)

</stderr_txt>
]]>

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