Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:44:17 (18353): wrapper (7.7.26015): starting
06:44:17 (18353): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 06:44:17] Arguments: --nthreads 8
[2025-05-24 06:44:17] Threads: 8
[2025-05-24 06:44:17] Checking for CVMFS
[2025-05-24 06:44:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 06:44:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 06:44:19] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 06:44:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 06:44:19] 2.11.2.0 9859 16922 87392 146355 3 16 21129676 25165825 3284 130560 0 9225855 99.756 12136888 1769 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-24 06:44:19] CVMFS is ok
[2025-05-24 06:44:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 06:44:19] Checking for apptainer binary...
[2025-05-24 06:44:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 06:44:19] Running /usr/bin/apptainer --version
[2025-05-24 06:44:20] apptainer version 1.3.2-1.el7
[2025-05-24 06:44:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 06:44:26] cg-vwn461.simple-grid.lan
[2025-05-24 06:44:26] apptainer works
[2025-05-24 06:44:27] Set ATHENA_PROC_NUMBER=8
[2025-05-24 06:44:27] Set ATHENA_CORE_NUMBER=8
[2025-05-24 06:44:27] Starting ATLAS job with PandaID=6665147961
[2025-05-24 06:44:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 18:15:41]  *** The last 200 lines of the pilot log: ***
[2025-05-24 18:15:41] 2025-05-24 09:21:26,826 | INFO     | extracted standard info from prmon json
[2025-05-24 18:15:41] 2025-05-24 09:21:26,826 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 18:15:41] 2025-05-24 09:21:26,826 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 18:15:41] 2025-05-24 09:21:26,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 18:15:41] 2025-05-24 09:21:26,827 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 18:15:41] 2025-05-24 09:21:26,832 | INFO     | fitting pss+swap vs Time
[2025-05-24 18:15:41] 2025-05-24 09:21:26,832 | INFO     | sum of square deviations: 5449944045.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,834 | INFO     | sum of deviations: 103718531037.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,834 | INFO     | mean x: 1748070438.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,835 | INFO     | mean y: 2437105.4115384617
[2025-05-24 18:15:41] 2025-05-24 09:21:26,835 | INFO     | -- intersect: -33265298587.69841
[2025-05-24 18:15:41] 2025-05-24 09:21:26,835 | INFO     | intersect: -33265298587.69841
[2025-05-24 18:15:41] 2025-05-24 09:21:26,835 | INFO     | chi2: 6.366649487488361
[2025-05-24 18:15:41] 2025-05-24 09:21:26,836 | INFO     | sum of square deviations: 5141528960.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,838 | INFO     | sum of deviations: 118853603956.99998
[2025-05-24 18:15:41] 2025-05-24 09:21:26,838 | INFO     | mean x: 1748070286.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,838 | INFO     | mean y: 2444454.031372549
[2025-05-24 18:15:41] 2025-05-24 09:21:26,838 | INFO     | -- intersect: -40406635233.66598
[2025-05-24 18:15:41] 2025-05-24 09:21:26,838 | INFO     | intersect: -40406635233.66598
[2025-05-24 18:15:41] 2025-05-24 09:21:26,839 | INFO     | chi2: 5.618000748081152
[2025-05-24 18:15:41] 2025-05-24 09:21:26,839 | INFO     | current chi2=5.618000748081152 (change=11.758912452749932 %)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,839 | INFO     | right removable region: 254
[2025-05-24 18:15:41] 2025-05-24 09:21:26,839 | INFO     | sum of square deviations: 5141528960.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,841 | INFO     | sum of deviations: 15814961016.000004
[2025-05-24 18:15:41] 2025-05-24 09:21:26,841 | INFO     | mean x: 1748070591.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,842 | INFO     | mean y: 2480536.831372549
[2025-05-24 18:15:41] 2025-05-24 09:21:26,842 | INFO     | -- intersect: -5374454702.658378
[2025-05-24 18:15:41] 2025-05-24 09:21:26,842 | INFO     | intersect: -5374454702.658378
[2025-05-24 18:15:41] 2025-05-24 09:21:26,842 | INFO     | chi2: 1.8614432301564456
[2025-05-24 18:15:41] 2025-05-24 09:21:26,842 | INFO     | current chi2=1.8614432301564456 (change=70.76259288634431 %)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,843 | INFO     | sum of square deviations: 4844974562.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | sum of deviations: -17650051252.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | mean x: 1748070743.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | mean y: 2497603.204
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | -- intersect: 6370650380.429399
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | intersect: 6370650380.429399
[2025-05-24 18:15:41] 2025-05-24 09:21:26,845 | INFO     | chi2: 0.8800958203622031
[2025-05-24 18:15:41] 2025-05-24 09:21:26,846 | INFO     | current chi2=0.8800958203622031 (change=52.719706617739014 %)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,846 | INFO     | sum of square deviations: 4560048290.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,848 | INFO     | sum of deviations: -14829394569.000002
[2025-05-24 18:15:41] 2025-05-24 09:21:26,848 | INFO     | mean x: 1748070896.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,848 | INFO     | mean y: 2496064.906122449
[2025-05-24 18:15:41] 2025-05-24 09:21:26,848 | INFO     | -- intersect: 5687267673.184281
[2025-05-24 18:15:41] 2025-05-24 09:21:26,848 | INFO     | intersect: 5687267673.184281
[2025-05-24 18:15:41] 2025-05-24 09:21:26,849 | INFO     | chi2: 0.8633540778531505
[2025-05-24 18:15:41] 2025-05-24 09:21:26,849 | INFO     | current chi2=0.8633540778531505 (change=1.9022636083151176 %)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,849 | INFO     | left removable region: 30
[2025-05-24 18:15:41] 2025-05-24 09:21:26,849 | INFO     | sum of square deviations: 3485088600.0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,851 | INFO     | sum of deviations: 7595412407.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,851 | INFO     | mean x: 1748071170.5
[2025-05-24 18:15:41] 2025-05-24 09:21:26,851 | INFO     | mean y: 2501630.8258928573
[2025-05-24 18:15:41] 2025-05-24 09:21:26,851 | INFO     | -- intersect: -3807249850.8462653
[2025-05-24 18:15:41] 2025-05-24 09:21:26,851 | INFO     | intersect: -3807249850.8462653
[2025-05-24 18:15:41] 2025-05-24 09:21:26,852 | INFO     | chi2: 0.00020964185410598453
[2025-05-24 18:15:41] 2025-05-24 09:21:26,852 | INFO     | -- intersect: -3807249850.8462653
[2025-05-24 18:15:41] 2025-05-24 09:21:26,852 | INFO     | current memory leak: 2.18 B/s (using 224 data points, chi2=0.00)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | ..............................
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . Timing measurements:
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . get job = 0 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . initial setup = 9 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . payload setup = 160 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . stage-in = 0 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . payload execution = 15994 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . stage-out = 3 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | . log creation = 1 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,853 | INFO     | ..............................
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | 
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | job summary report
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | --------------------------------------------------
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | PanDA job id: 6665147961
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | task id: 44871837
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | errors: (none)
[2025-05-24 18:15:41] 2025-05-24 09:21:26,962 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | pilot state: finished 
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | transexitcode: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | exeerrorcode: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | exeerrordiag: 
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | exitcode: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | exitmsg: OK
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | cpuconsumptiontime: 60142 s
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | nevents: 400
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | neventsw: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | pid: 30983
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | pgrp: 30983
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | corecount: 8
[2025-05-24 18:15:41] 2025-05-24 09:21:26,963 | INFO     | event service: False
[2025-05-24 18:15:41] 2025-05-24 09:21:26,964 | INFO     | sizes: {0: 2392906, 1: 2393763, 12: 2393763, 23: 2393791, 34: 2393819, 44: 2393847, 55: 2394003, 66: 2394031, 76: 2394059, 87: 2394115, 90: 2394349, 98: 2394657, 1
[2025-05-24 18:15:41] 2025-05-24 09:21:26,964 | INFO     | --------------------------------------------------
[2025-05-24 18:15:41] 2025-05-24 09:21:26,964 | INFO     | 
[2025-05-24 18:15:41] 2025-05-24 09:21:26,964 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-05-24 18:15:41] 2025-05-24 09:21:27,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,442 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 18:15:41] 2025-05-24 09:21:27,444 | INFO     | job 6665147961 has completed (purged errors)
[2025-05-24 18:15:41] 2025-05-24 09:21:27,445 | INFO     | overall cleanup function is called
[2025-05-24 18:15:41] 2025-05-24 09:21:28,453 | INFO     | --- collectZombieJob: --- 10, [30983]
[2025-05-24 18:15:41] 2025-05-24 09:21:28,453 | INFO     | zombie collector waiting for pid 30983
[2025-05-24 18:15:41] 2025-05-24 09:21:28,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 18:15:41] 2025-05-24 09:21:28,453 | INFO     | collected zombie processes
[2025-05-24 18:15:41] 2025-05-24 09:21:28,453 | INFO     | will attempt to kill all subprocesses of pid=30983
[2025-05-24 18:15:41] 2025-05-24 09:21:28,575 | INFO     | process IDs to be killed: [30983] (in reverse order)
[2025-05-24 18:15:41] 2025-05-24 09:21:29,588 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 18:15:41] 2025-05-24 09:21:29,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 18:15:41] 2025-05-24 09:21:29,592 | INFO     | did not find any defunct processes belonging to 30983
[2025-05-24 18:15:41] 2025-05-24 09:21:29,595 | INFO     | did not find any defunct processes belonging to 30983
[2025-05-24 18:15:41] 2025-05-24 09:21:29,595 | INFO     | ready for new job
[2025-05-24 18:15:41] 2025-05-24 09:21:29,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 18:15:41] 2025-05-24 09:21:29,597 | INFO     | **************************************
[2025-05-24 18:15:41] 2025-05-24 09:21:29,597 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 18:15:41] 2025-05-24 09:21:29,597 | INFO     | **************************************
[2025-05-24 18:15:41] 2025-05-24 09:21:29,597 | INFO     | 
[2025-05-24 18:15:41] 2025-05-24 09:21:29,598 | INFO     | pilot is running in a VM
[2025-05-24 18:15:41] 2025-05-24 09:21:29,598 | INFO     | architecture information:
[2025-05-24 18:15:41] 2025-05-24 09:21:29,610 | INFO     | executing command: cat /etc/os-release
[2025-05-24 18:15:41] 2025-05-24 09:21:29,792 | INFO     | cat /etc/os-release:
[2025-05-24 18:15:41] NAME="CentOS Linux"
[2025-05-24 18:15:41] VERSION="7 (Core)"
[2025-05-24 18:15:41] ID="centos"
[2025-05-24 18:15:41] ID_LIKE="rhel fedora"
[2025-05-24 18:15:41] VERSION_ID="7"
[2025-05-24 18:15:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 18:15:41] ANSI_COLOR="0;31"
[2025-05-24 18:15:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 18:15:41] HOME_URL="https://www.centos.org/"
[2025-05-24 18:15:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 18:15:41] 
[2025-05-24 18:15:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 18:15:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 18:15:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 18:15:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 18:15:41] 
[2025-05-24 18:15:41] 2025-05-24 09:21:29,792 | INFO     | **************************************
[2025-05-24 18:15:41] 2025-05-24 09:21:30,296 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-05-24 18:15:41] 2025-05-24 09:21:30,580 | INFO     | sufficient remaining disk space (496479764480 B)
[2025-05-24 18:15:41] 2025-05-24 09:21:30,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 18:15:41] 2025-05-24 09:21:30,581 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 18:15:41] 2025-05-24 09:21:30,581 | INFO     | update_server=False
[2025-05-24 18:15:41] 2025-05-24 09:21:30,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 18:15:41] 2025-05-24 09:21:30,582 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-24 18:15:41] 2025-05-24 09:21:30,582 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 18:15:41] 2025-05-24 09:21:30,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 18:15:41] 2025-05-24 09:21:30,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 18:15:41] 2025-05-24 09:21:30,586 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 18:15:41] 2025-05-24 09:21:30,677 | INFO     | all job control threads have been joined
[2025-05-24 18:15:41] 2025-05-24 09:21:31,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 18:15:41] 2025-05-24 09:21:31,070 | INFO     | aborting loop
[2025-05-24 18:15:41] 2025-05-24 09:21:31,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 18:15:41] 2025-05-24 09:21:31,242 | INFO     | all data control threads have been joined
[2025-05-24 18:15:41] 2025-05-24 09:21:31,590 | INFO     | [job] retrieve thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:31,683 | INFO     | [job] control thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:31,759 | INFO     | [data] copytool_in thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:31,819 | INFO     | all payload control threads have been joined
[2025-05-24 18:15:41] 2025-05-24 09:21:31,883 | INFO     | [payload] failed_post thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:31,896 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:31,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 18:15:41] 2025-05-24 09:21:32,076 | INFO     | [job] job monitor thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,148 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,248 | INFO     | [data] control thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,317 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,464 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,558 | INFO     | [payload] validate_post thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,825 | INFO     | [payload] control thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:32,980 | INFO     | [job] queue monitor thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:33,084 | INFO     | [job] validate thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:33,223 | INFO     | [data] copytool_out thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:34,596 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 18:15:41] 2025-05-24 09:21:35,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424841967424)>', '<ExcThread(monitor, started 140424408717056)>']
[2025-05-24 18:15:41] 2025-05-24 09:21:36,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 18:15:41] 2025-05-24 09:21:36,618 | INFO     | [monitor] control thread has ended
[2025-05-24 18:15:41] 2025-05-24 09:21:40,852 | INFO     | all workflow threads have been joined
[2025-05-24 18:15:41] 2025-05-24 09:21:40,852 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 18:15:41] 2025-05-24 09:21:40,852 | INFO     | traces error code: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:40,852 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 18:15:41] 2025-05-24 09:21:41,111 [wrapper] ==== pilot stdout END ====
[2025-05-24 18:15:41] 2025-05-24 09:21:41,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 18:15:41] 2025-05-24 09:21:41,330 [wrapper] pilotpid: 24345
[2025-05-24 18:15:41] 2025-05-24 09:21:41,445 [wrapper] Pilot exit status: 0
[2025-05-24 18:15:41] 2025-05-24 09:21:41,761 [wrapper] pandaids: 6665147961
[2025-05-24 18:15:41] 2025-05-24 09:21:42,327 [wrapper] cleanup supervisor_pilot 20121 24346
[2025-05-24 18:15:41] 2025-05-24 09:21:42,380 [wrapper] Test setup, not cleaning
[2025-05-24 18:15:41] 2025-05-24 09:21:42,494 [wrapper] apfmon messages muted
[2025-05-24 18:15:41] 2025-05-24 09:21:42,584 [wrapper] ==== wrapper stdout END ====
[2025-05-24 18:15:41] 2025-05-24 09:21:42,679 [wrapper] ==== wrapper stderr END ====
[2025-05-24 18:15:41]  *** Error codes and diagnostics ***
[2025-05-24 18:15:41]     "exeErrorCode": 0,
[2025-05-24 18:15:41]     "exeErrorDiag": "",
[2025-05-24 18:15:41]     "pilotErrorCode": 0,
[2025-05-24 18:15:41]     "pilotErrorDiag": "",
[2025-05-24 18:15:41]  *** Listing of results directory ***
[2025-05-24 18:15:41] total 416924
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc    495897 May 24 04:59 pilot3.tar.gz
[2025-05-24 18:15:41] -rwx------. 1 boinc boinc     37140 May 24 06:05 runpilot2-wrapper.sh
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc      5111 May 24 06:06 queuedata.json
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc       100 May 24 06:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 18:15:41] -rwxr-xr-x. 1 boinc boinc      7986 May 24 06:44 run_atlas
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc       105 May 24 06:44 job.xml
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc      6373 May 24 06:44 init_data.xml
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc 227127238 May 24 06:44 EVNT.44871834._000077.pool.root.1
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc     15093 May 24 06:44 start_atlas.sh
[2025-05-24 18:15:41] drwxrwx--x. 2 boinc boinc        68 May 24 06:44 shared
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc    508878 May 24 06:44 input.tar.gz
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc         0 May 24 06:44 boinc_lockfile
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc      2556 May 24 06:44 pandaJob.out
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc    988604 May 24 06:47 agis_schedconf.cvmfs.json
[2025-05-24 18:15:41] drwx------. 4 boinc boinc      4096 May 24 06:47 pilot3
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc 192341235 May 24 11:18 HITS.44871837._001912.pool.root.1
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc       531 May 24 11:18 boinc_task_state.xml
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc      1016 May 24 11:19 memory_monitor_summary.json
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc   1596740 May 24 11:19 agis_ddmendpoints.agis.ALL.json
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc    404242 May 24 11:19 log.44871837._001912.job.log.tgz.1
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc      7682 May 24 11:21 heartbeat.json
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc        95 May 24 11:21 pilot_heartbeat.json
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc      4540 May 24 11:21 pilotlog.txt
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc   1416642 May 24 11:21 log.44871837._001912.job.log.1
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc       357 May 24 11:21 output.list
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc       620 May 24 11:21 runtime_log
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc   1843200 May 24 11:21 result.tar.gz
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc      8673 May 24 11:21 runtime_log.err
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc       657 May 24 11:21 8NNMDmgJvc7n9Rq4apOajLDm4fhM0noT9bVof3QYDmK1KKDmBp2PHo.diag
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc      8192 May 24 18:15 boinc_mmap_file
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc        28 May 24 18:15 wrapper_checkpoint.txt
[2025-05-24 18:15:41] -rw-r--r--. 1 boinc boinc     20508 May 24 18:15 stderr.txt
[2025-05-24 18:15:41] HITS file was successfully produced:
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc 192341235 May 24 11:18 shared/HITS.pool.root.1
[2025-05-24 18:15:41]  *** Contents of shared directory: ***
[2025-05-24 18:15:41] total 411956
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc 227127238 May 24 06:44 ATLAS.root_0
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc     15093 May 24 06:44 start_atlas.sh
[2025-05-24 18:15:41] -rw-r--r--. 2 boinc boinc    508878 May 24 06:44 input.tar.gz
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc 192341235 May 24 11:18 HITS.pool.root.1
[2025-05-24 18:15:41] -rw-------. 1 boinc boinc   1843200 May 24 11:21 result.tar.gz
18:15:43 (18353): run_atlas exited; CPU time 60340.544037
18:15:43 (18353): called boinc_finish(0)

</stderr_txt>
]]>

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