Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:58 (3114173): wrapper (7.7.26015): starting
00:12:58 (3114173): wrapper: running run_atlas (--nthreads 8)
[2025-05-24 00:12:58] Arguments: --nthreads 8
[2025-05-24 00:12:58] Threads: 8
[2025-05-24 00:12:58] Checking for CVMFS
[2025-05-24 00:12:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-24 00:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-24 00:13:00] Running cvmfs_config stat atlas.cern.ch
[2025-05-24 00:13:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-24 00:13:01] 2.12.6.0 20986 97207 904944 146354 2 608 17770048 32935936 33024 130560 0 587119153 99.691 464530056 19985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-24 00:13:01] CVMFS is ok
[2025-05-24 00:13:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-24 00:13:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-24 00:13:01] Further information can be found at the LHC@home message board.
[2025-05-24 00:13:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 00:13:01] Checking for apptainer binary...
[2025-05-24 00:13:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 00:13:01] Running /usr/bin/apptainer --version
[2025-05-24 00:13:01] apptainer version 1.4.1-1.el9
[2025-05-24 00:13:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 00:13:01] lc-10-10.aglt2.org
[2025-05-24 00:13:01] apptainer works
[2025-05-24 00:13:01] Set ATHENA_PROC_NUMBER=8
[2025-05-24 00:13:01] Set ATHENA_CORE_NUMBER=8
[2025-05-24 00:13:02] Starting ATLAS job with PandaID=6665146727
[2025-05-24 00:13:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-24 08:39:06]  *** The last 200 lines of the pilot log: ***
[2025-05-24 08:39:06] 2025-05-24 12:38:44,400 | INFO     | extracted standard info from prmon json
[2025-05-24 08:39:06] 2025-05-24 12:38:44,400 | INFO     | extracted standard memory fields from prmon json
[2025-05-24 08:39:06] 2025-05-24 12:38:44,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-24 08:39:06] 2025-05-24 12:38:44,428 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-24 08:39:06] 2025-05-24 12:38:44,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-24 08:39:06] 2025-05-24 12:38:44,465 | INFO     | fitting pss+swap vs Time
[2025-05-24 08:39:06] 2025-05-24 12:38:44,466 | INFO     | sum of square deviations: 37155001643.92273
[2025-05-24 08:39:06] 2025-05-24 12:38:44,496 | INFO     | sum of deviations: 213840232434.66766
[2025-05-24 08:39:06] 2025-05-24 12:38:44,496 | INFO     | mean x: 1748075209.41785
[2025-05-24 08:39:06] 2025-05-24 12:38:44,496 | INFO     | mean y: 2085502.8559837728
[2025-05-24 08:39:06] 2025-05-24 12:38:44,496 | INFO     | -- intersect: -10058708267.996548
[2025-05-24 08:39:06] 2025-05-24 12:38:44,496 | INFO     | intersect: -10058708267.996548
[2025-05-24 08:39:06] 2025-05-24 12:38:44,497 | INFO     | chi2: 4.923896870753445
[2025-05-24 08:39:06] 2025-05-24 12:38:44,498 | INFO     | sum of square deviations: 36036010933.04113
[2025-05-24 08:39:06] 2025-05-24 12:38:44,511 | INFO     | sum of deviations: 241738378143.70102
[2025-05-24 08:39:06] 2025-05-24 12:38:44,511 | INFO     | mean x: 1748075056.922131
[2025-05-24 08:39:06] 2025-05-24 12:38:44,532 | INFO     | mean y: 2089277.0184426229
[2025-05-24 08:39:06] 2025-05-24 12:38:44,532 | INFO     | -- intersect: -11724425900.23045
[2025-05-24 08:39:06] 2025-05-24 12:38:44,532 | INFO     | intersect: -11724425900.23045
[2025-05-24 08:39:06] 2025-05-24 12:38:44,533 | INFO     | chi2: 4.257403688461984
[2025-05-24 08:39:06] 2025-05-24 12:38:44,533 | INFO     | current chi2=4.257403688461984 (change=13.53588833775626 %)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,533 | INFO     | right removable region: 487
[2025-05-24 08:39:06] 2025-05-24 12:38:44,533 | INFO     | sum of square deviations: 36035885273.04114
[2025-05-24 08:39:06] 2025-05-24 12:38:44,549 | INFO     | sum of deviations: 98264057835.31955
[2025-05-24 08:39:06] 2025-05-24 12:38:44,549 | INFO     | mean x: 1748075361.922131
[2025-05-24 08:39:06] 2025-05-24 12:38:44,549 | INFO     | mean y: 2101235.1926229508
[2025-05-24 08:39:06] 2025-05-24 12:38:44,549 | INFO     | -- intersect: -4764618859.593526
[2025-05-24 08:39:06] 2025-05-24 12:38:44,549 | INFO     | intersect: -4764618859.593526
[2025-05-24 08:39:06] 2025-05-24 12:38:44,550 | INFO     | chi2: 2.0207332250353565
[2025-05-24 08:39:06] 2025-05-24 12:38:44,550 | INFO     | current chi2=2.0207332250353565 (change=58.96069154011043 %)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,551 | INFO     | sum of square deviations: 34939496525.99166
[2025-05-24 08:39:06] 2025-05-24 12:38:44,566 | INFO     | sum of deviations: 35089728971.30849
[2025-05-24 08:39:06] 2025-05-24 12:38:44,567 | INFO     | mean x: 1748075514.4244306
[2025-05-24 08:39:06] 2025-05-24 12:38:44,567 | INFO     | mean y: 2110016.939958592
[2025-05-24 08:39:06] 2025-05-24 12:38:44,567 | INFO     | -- intersect: -1753481852.4764535
[2025-05-24 08:39:06] 2025-05-24 12:38:44,567 | INFO     | intersect: -1753481852.4764535
[2025-05-24 08:39:06] 2025-05-24 12:38:44,567 | INFO     | chi2: 1.2064874086960091
[2025-05-24 08:39:06] 2025-05-24 12:38:44,568 | INFO     | current chi2=1.2064874086960091 (change=40.294572596296106 %)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,568 | INFO     | sum of square deviations: 33865573804.437084
[2025-05-24 08:39:06] 2025-05-24 12:38:44,588 | INFO     | monitor loop #1528: job 0:6665146727 is in state 'finished'
[2025-05-24 08:39:06] 2025-05-24 12:38:44,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,589 | INFO     | sum of deviations: 2429054341.8619347
[2025-05-24 08:39:06] 2025-05-24 12:38:44,590 | INFO     | mean x: 1748075666.9267783
[2025-05-24 08:39:06] 2025-05-24 12:38:44,590 | INFO     | mean y: 2114647.338912134
[2025-05-24 08:39:06] 2025-05-24 12:38:44,590 | INFO     | -- intersect: -123268457.43799122
[2025-05-24 08:39:06] 2025-05-24 12:38:44,590 | INFO     | intersect: -123268457.43799122
[2025-05-24 08:39:06] 2025-05-24 12:38:44,590 | INFO     | chi2: 0.9682357963094897
[2025-05-24 08:39:06] 2025-05-24 12:38:44,591 | INFO     | current chi2=0.9682357963094897 (change=19.74754238372247 %)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,591 | INFO     | left removable region: 30
[2025-05-24 08:39:06] 2025-05-24 12:38:44,591 | INFO     | sum of square deviations: 29595545397.33484
[2025-05-24 08:39:06] 2025-05-24 12:38:44,609 | INFO     | sum of deviations: 24860383608.518604
[2025-05-24 08:39:06] 2025-05-24 12:38:44,622 | INFO     | mean x: 1748075941.4201312
[2025-05-24 08:39:06] 2025-05-24 12:38:44,622 | INFO     | mean y: 2119900.3566739606
[2025-05-24 08:39:06] 2025-05-24 12:38:44,622 | INFO     | -- intersect: -1466271301.666596
[2025-05-24 08:39:06] 2025-05-24 12:38:44,622 | INFO     | intersect: -1466271301.666596
[2025-05-24 08:39:06] 2025-05-24 12:38:44,623 | INFO     | chi2: 0.21688933125137116
[2025-05-24 08:39:06] 2025-05-24 12:38:44,623 | INFO     | -- intersect: -1466271301.666596
[2025-05-24 08:39:06] 2025-05-24 12:38:44,623 | INFO     | current memory leak: 0.84 B/s (using 457 data points, chi2=0.22)
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | ..............................
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . Timing measurements:
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . get job = 0 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . initial setup = 6 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . payload setup = 56 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . stage-in = 0 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,624 | INFO     | . payload execution = 30105 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,625 | INFO     | . stage-out = 6 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,625 | INFO     | . log creation = 1 s
[2025-05-24 08:39:06] 2025-05-24 12:38:44,625 | INFO     | ..............................
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | 
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | job summary report
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | --------------------------------------------------
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | PanDA job id: 6665146727
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | task id: 44871837
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | errors: (none)
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | pilot state: finished 
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | transexitcode: 0
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | exeerrorcode: 0
[2025-05-24 08:39:06] 2025-05-24 12:38:45,486 | INFO     | exeerrordiag: 
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | exitcode: 0
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | exitmsg: OK
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | cpuconsumptiontime: 53595 s
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | nevents: 400
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | neventsw: 0
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | pid: 3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | pgrp: 3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | corecount: 8
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | event service: False
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | sizes: {0: 2392906, 1: 2393591, 2: 2393591, 3: 2393818, 4: 2393818, 14: 2393846, 25: 2394002, 32: 2394236, 36: 2394264, 30166: 2431496, 30167: 2431495, 30174: 2440
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | --------------------------------------------------
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | 
[2025-05-24 08:39:06] 2025-05-24 12:38:45,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-24 08:39:06] 2025-05-24 12:38:45,543 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | job 6665146727 has completed (purged errors)
[2025-05-24 08:39:06] 2025-05-24 12:38:45,545 | INFO     | overall cleanup function is called
[2025-05-24 08:39:06] 2025-05-24 12:38:46,591 | INFO     | --- collectZombieJob: --- 10, [3223425]
[2025-05-24 08:39:06] 2025-05-24 12:38:46,591 | INFO     | zombie collector waiting for pid 3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:46,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-24 08:39:06] 2025-05-24 12:38:46,592 | INFO     | collected zombie processes
[2025-05-24 08:39:06] 2025-05-24 12:38:46,592 | INFO     | will attempt to kill all subprocesses of pid=3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:49,322 | INFO     | process IDs to be killed: [3223425] (in reverse order)
[2025-05-24 08:39:06] 2025-05-24 12:38:50,500 | WARNING  | found no corresponding commands to process id(s)
[2025-05-24 08:39:06] 2025-05-24 12:38:50,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-24 08:39:06] 2025-05-24 12:38:50,552 | INFO     | did not find any defunct processes belonging to 3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:50,632 | INFO     | did not find any defunct processes belonging to 3223425
[2025-05-24 08:39:06] 2025-05-24 12:38:50,633 | INFO     | ready for new job
[2025-05-24 08:39:06] 2025-05-24 12:38:50,633 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-24 08:39:06] 2025-05-24 12:38:50,635 | INFO     | **************************************
[2025-05-24 08:39:06] 2025-05-24 12:38:50,635 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-24 08:39:06] 2025-05-24 12:38:50,635 | INFO     | **************************************
[2025-05-24 08:39:06] 2025-05-24 12:38:50,635 | INFO     | 
[2025-05-24 08:39:06] 2025-05-24 12:38:50,684 | INFO     | architecture information:
[2025-05-24 08:39:06] 2025-05-24 12:38:50,688 | INFO     | executing command: cat /etc/os-release
[2025-05-24 08:39:06] 2025-05-24 12:38:50,736 | INFO     | cat /etc/os-release:
[2025-05-24 08:39:06] NAME="CentOS Linux"
[2025-05-24 08:39:06] VERSION="7 (Core)"
[2025-05-24 08:39:06] ID="centos"
[2025-05-24 08:39:06] ID_LIKE="rhel fedora"
[2025-05-24 08:39:06] VERSION_ID="7"
[2025-05-24 08:39:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-24 08:39:06] ANSI_COLOR="0;31"
[2025-05-24 08:39:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-24 08:39:06] HOME_URL="https://www.centos.org/"
[2025-05-24 08:39:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-24 08:39:06] 
[2025-05-24 08:39:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-24 08:39:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-24 08:39:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-24 08:39:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-24 08:39:06] 
[2025-05-24 08:39:06] 2025-05-24 12:38:50,736 | INFO     | **************************************
[2025-05-24 08:39:06] 2025-05-24 12:38:51,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-24 08:39:06] 2025-05-24 12:38:51,350 | INFO     | sufficient remaining disk space (93654614016 B)
[2025-05-24 08:39:06] 2025-05-24 12:38:51,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-24 08:39:06] 2025-05-24 12:38:51,350 | INFO     | current server update state: UPDATING_FINAL
[2025-05-24 08:39:06] 2025-05-24 12:38:51,351 | INFO     | update_server=False
[2025-05-24 08:39:06] 2025-05-24 12:38:51,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-24 08:39:06] 2025-05-24 12:38:51,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-24 08:39:06] 2025-05-24 12:38:51,351 | INFO     | aborting loop
[2025-05-24 08:39:06] 2025-05-24 12:38:51,533 | INFO     | all data control threads have been joined
[2025-05-24 08:39:06] 2025-05-24 12:38:51,567 | INFO     | all payload control threads have been joined
[2025-05-24 08:39:06] 2025-05-24 12:38:51,567 | INFO     | all job control threads have been joined
[2025-05-24 08:39:06] 2025-05-24 12:38:52,052 | INFO     | found 0 job(s) in 20 queues
[2025-05-24 08:39:06] 2025-05-24 12:38:52,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-24 08:39:06] 2025-05-24 12:38:52,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-24 08:39:06] 2025-05-24 12:38:52,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-24 08:39:06] 2025-05-24 12:38:52,357 | INFO     | [job] retrieve thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,357 | INFO     | [job] job monitor thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,539 | INFO     | [data] control thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,573 | INFO     | [payload] control thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,573 | INFO     | [job] control thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,668 | INFO     | [payload] validate_pre thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,877 | INFO     | [payload] validate_post thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:52,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-24 08:39:06] 2025-05-24 12:38:53,113 | INFO     | [payload] failed_post thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:53,197 | INFO     | [payload] execute_payloads thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:53,668 | INFO     | [job] validate thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:53,701 | INFO     | [data] copytool_in thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:53,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:53,776 | INFO     | [job] create_data_payload thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:54,200 | INFO     | [data] copytool_out thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:54,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-24 08:39:06] 2025-05-24 12:38:55,317 | INFO     | [job] queue monitor thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:56,950 | INFO     | [data] queue_monitor thread has finished
[2025-05-24 08:39:06] 2025-05-24 12:38:57,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845189080896)>', '<ExcThread(monitor, started 139844294518528)>']
[2025-05-24 08:39:06] 2025-05-24 12:38:58,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-24 08:39:06] 2025-05-24 12:38:58,106 | INFO     | [monitor] control thread has ended
[2025-05-24 08:39:06] 2025-05-24 12:39:02,947 | INFO     | all workflow threads have been joined
[2025-05-24 08:39:06] 2025-05-24 12:39:02,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-24 08:39:06] 2025-05-24 12:39:02,949 | INFO     | traces error code: 0
[2025-05-24 08:39:06] 2025-05-24 12:39:02,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-24 08:39:06] 2025-05-24 12:39:04,016 [wrapper] ==== pilot stdout END ====
[2025-05-24 08:39:06] 2025-05-24 12:39:04,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-24 08:39:06] 2025-05-24 12:39:04,110 [wrapper] pilotpid: 3144192
[2025-05-24 08:39:06] 2025-05-24 12:39:04,130 [wrapper] Pilot exit status: 0
[2025-05-24 08:39:06] 2025-05-24 12:39:04,253 [wrapper] pandaids: 6665146727
[2025-05-24 08:39:06] 2025-05-24 12:39:05,126 [wrapper] cleanup supervisor_pilot  293145 3144193
[2025-05-24 08:39:06] 2025-05-24 12:39:05,201 [wrapper] Test setup, not cleaning
[2025-05-24 08:39:06] 2025-05-24 12:39:05,244 [wrapper] apfmon messages muted
[2025-05-24 08:39:06] 2025-05-24 12:39:05,309 [wrapper] ==== wrapper stdout END ====
[2025-05-24 08:39:06] 2025-05-24 12:39:05,368 [wrapper] ==== wrapper stderr END ====
[2025-05-24 08:39:06]  *** Error codes and diagnostics ***
[2025-05-24 08:39:06]     "exeErrorCode": 0,
[2025-05-24 08:39:06]     "exeErrorDiag": "",
[2025-05-24 08:39:06]     "pilotErrorCode": 0,
[2025-05-24 08:39:06]     "pilotErrorDiag": "",
[2025-05-24 08:39:06]  *** Listing of results directory ***
[2025-05-24 08:39:06] total 419080
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas    495897 May 23 22:59 pilot3.tar.gz
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas      5111 May 24 00:03 queuedata.json
[2025-05-24 08:39:06] -rwx------. 1 boincer umatlas     37140 May 24 00:04 runpilot2-wrapper.sh
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas       100 May 24 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-24 08:39:06] -rwxr-xr-x. 1 boincer umatlas      7986 May 24 00:12 run_atlas
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas       105 May 24 00:12 job.xml
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas 223482610 May 24 00:12 EVNT.44871834._000043.pool.root.1
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas     15093 May 24 00:12 start_atlas.sh
[2025-05-24 08:39:06] drwxrwx--x. 2 boincer umatlas      4096 May 24 00:12 shared
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas    508874 May 24 00:12 input.tar.gz
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas         0 May 24 00:12 boinc_lockfile
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas      2556 May 24 00:13 pandaJob.out
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas    988604 May 24 00:13 agis_schedconf.cvmfs.json
[2025-05-24 08:39:06] drwx------. 4 boincer umatlas      4096 May 24 00:14 pilot3
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas      6865 May 24 08:27 init_data.xml
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas 196477315 May 24 08:35 HITS.44871837._001063.pool.root.1
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas       531 May 24 08:36 boinc_task_state.xml
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas      1044 May 24 08:37 memory_monitor_summary.json
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas   1596740 May 24 08:37 agis_ddmendpoints.agis.ALL.json
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas    516471 May 24 08:38 log.44871837._001063.job.log.tgz.1
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas        95 May 24 08:38 pilot_heartbeat.json
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas      7719 May 24 08:38 heartbeat.json
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas      4353 May 24 08:39 pilotlog.txt
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas   2153118 May 24 08:39 log.44871837._001063.job.log.1
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas        28 May 24 08:39 wrapper_checkpoint.txt
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas       357 May 24 08:39 output.list
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas       620 May 24 08:39 runtime_log
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas   2693120 May 24 08:39 result.tar.gz
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas      8192 May 24 08:39 boinc_mmap_file
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas      8660 May 24 08:39 runtime_log.err
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas       658 May 24 08:39 KFaMDmZIvc7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm94OKDm9BzOxn.diag
[2025-05-24 08:39:06] -rw-r--r--. 1 boincer umatlas     20945 May 24 08:39 stderr.txt
[2025-05-24 08:39:06] HITS file was successfully produced:
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas 196477315 May 24 08:35 shared/HITS.pool.root.1
[2025-05-24 08:39:06]  *** Contents of shared directory: ***
[2025-05-24 08:39:06] total 413276
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas 223482610 May 24 00:12 ATLAS.root_0
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas     15093 May 24 00:12 start_atlas.sh
[2025-05-24 08:39:06] -rw-r--r--. 2 boincer umatlas    508874 May 24 00:12 input.tar.gz
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas 196477315 May 24 08:35 HITS.pool.root.1
[2025-05-24 08:39:06] -rw-------. 1 boincer umatlas   2693120 May 24 08:39 result.tar.gz
08:39:07 (3114173): run_atlas exited; CPU time 55494.023375
08:39:07 (3114173): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN