Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:57:44 (541734): wrapper (7.7.26015): starting
06:57:44 (541734): wrapper: running run_atlas (--nthreads 8)
[2025-05-18 06:57:44] Arguments: --nthreads 8
[2025-05-18 06:57:44] Threads: 8
[2025-05-18 06:57:44] Checking for CVMFS
[2025-05-18 06:57:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-18 06:57:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-18 06:57:44] Running cvmfs_config stat atlas.cern.ch
[2025-05-18 06:57:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-18 06:57:44] 2.12.6.0 863165 8228 282700 146133 0 18 37126525 40960001 1482 16776704 1 27968461 99.547 37100476 27199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-18 06:57:44] CVMFS is ok
[2025-05-18 06:57:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-18 06:57:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-18 06:57:44] Further information can be found at the LHC@home message board.
[2025-05-18 06:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-18 06:57:44] Checking for apptainer binary...
[2025-05-18 06:57:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-18 06:57:44] Running /usr/bin/apptainer --version
[2025-05-18 06:57:44] apptainer version 1.4.0-1.el9
[2025-05-18 06:57:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-18 06:57:44] c7-11-14.aglt2.org
[2025-05-18 06:57:44] apptainer works
[2025-05-18 06:57:44] Set ATHENA_PROC_NUMBER=8
[2025-05-18 06:57:44] Set ATHENA_CORE_NUMBER=8
[2025-05-18 06:57:44] Starting ATLAS job with PandaID=6644585294
[2025-05-18 06:57:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-18 08:12:52]  *** The last 200 lines of the pilot log: ***
[2025-05-18 08:12:52]  filetype=log
[2025-05-18 08:12:52]  guid=6c708314-e398-4d77-99f6-1136420f7053
[2025-05-18 08:12:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-18 08:12:52]  is_altstaged=None
[2025-05-18 08:12:52]  is_tar=False
[2025-05-18 08:12:52]  lfn=log.44270670._008805.job.log.tgz.1
[2025-05-18 08:12:52]  mtime=0
[2025-05-18 08:12:52]  protocol_id=None
[2025-05-18 08:12:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-18 08:12:52]  replicas=None
[2025-05-18 08:12:52]  scope=mc23_13p6TeV
[2025-05-18 08:12:52]  status=None
[2025-05-18 08:12:52]  status_code=0
[2025-05-18 08:12:52]  storage_token=
[2025-05-18 08:12:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6644585294/log.44270670._008805.job.log.tgz.1
[2025-05-18 08:12:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/91/log.44270670._008805.job.log.tgz.1
[2025-05-18 08:12:52]  workdir=None
[2025-05-18 08:12:52] ]
[2025-05-18 08:12:52] 2025-05-18 12:12:26,560 | INFO     | transferring file log.44270670._008805.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6644585294/log.44270670._008805.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-05-18 08:12:52] 2025-05-18 12:12:26,561 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6644585294/log.44270670._008805.job.log.tgz.1 /tmp/boinchome/slots/0/log.44270670._008805.job
[2025-05-18 08:12:52] 2025-05-18 12:12:26,574 | INFO     | adding to output.list: log.44270670._008805.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/91/log.44270670._008805.job.log.tg
[2025-05-18 08:12:52] 2025-05-18 12:12:26,574 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-18 08:12:52] 2025-05-18 12:12:26,574 | INFO     | summary of transferred files:
[2025-05-18 08:12:52] 2025-05-18 12:12:26,575 | INFO     |  -- lfn=log.44270670._008805.job.log.tgz.1, status_code=0, status=transferred
[2025-05-18 08:12:52] 2025-05-18 12:12:26,575 | INFO     | stage-out finished correctly
[2025-05-18 08:12:52] 2025-05-18 12:12:26,625 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-18 08:12:52] 2025-05-18 12:12:29,111 | INFO     | job 6644585294 has state=finished
[2025-05-18 08:12:52] 2025-05-18 12:12:29,111 | INFO     | preparing for final server update for job 6644585294 in state='finished'
[2025-05-18 08:12:52] 2025-05-18 12:12:29,112 | INFO     | this job has now completed (state=finished)
[2025-05-18 08:12:52] 2025-05-18 12:12:29,112 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-18 08:12:52] 2025-05-18 12:12:29,112 | INFO     | log transfer has been attempted: DONE
[2025-05-18 08:12:52] 2025-05-18 12:12:29,112 | INFO     | job 6644585294 has finished - writing final server update
[2025-05-18 08:12:52] 2025-05-18 12:12:29,112 | INFO     | total number of processed events: 400 (read)
[2025-05-18 08:12:52] 2025-05-18 12:12:29,127 | INFO     | executing command: lscpu
[2025-05-18 08:12:52] 2025-05-18 12:12:29,181 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-18 08:12:52] 2025-05-18 12:12:32,041 | WARNING  | process 553081 can no longer be monitored (due to stat problems) - aborting
[2025-05-18 08:12:52] 2025-05-18 12:12:32,042 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6644585294/memory_monitor_summary.json (trf name=prmon)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,236 | INFO     | number of running child processes to parent process 553081: 1
[2025-05-18 08:12:52] 2025-05-18 12:12:32,236 | INFO     | maximum number of monitored processes: 6
[2025-05-18 08:12:52] 2025-05-18 12:12:32,262 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-18 08:12:52] 2025-05-18 12:12:32,263 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6644585294/memory_monitor_summary.json (trf name=prmon)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,263 | INFO     | extracted standard info from prmon json
[2025-05-18 08:12:52] 2025-05-18 12:12:32,263 | INFO     | extracted standard memory fields from prmon json
[2025-05-18 08:12:52] 2025-05-18 12:12:32,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-18 08:12:52] 2025-05-18 12:12:32,264 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-18 08:12:52] 2025-05-18 12:12:32,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | fitting pss+swap vs Time
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | sum of square deviations: 89127252.5
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | sum of deviations: 13900635043.0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | mean x: 1747568181.5
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | mean y: 2134229.8181818184
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | -- intersect: -272555437359.08148
[2025-05-18 08:12:52] 2025-05-18 12:12:32,266 | INFO     | intersect: -272555437359.08148
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | chi2: 1.236150059733102
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | -- intersect: -272555437359.08148
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | current memory leak: 155.96 B/s (using 66 data points, chi2=1.24)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | ..............................
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . Timing measurements:
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . get job = 0 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . initial setup = 2 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . payload setup = 3 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . stage-in = 0 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . payload execution = 4451 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . stage-out = 0 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | . log creation = 0 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,267 | INFO     | ..............................
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | 
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | job summary report
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | --------------------------------------------------
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | PanDA job id: 6644585294
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | task id: 44270670
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | errors: (none)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | pilot state: finished 
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | transexitcode: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | exeerrorcode: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | exeerrordiag: 
[2025-05-18 08:12:52] 2025-05-18 12:12:32,328 | INFO     | exitcode: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | exitmsg: OK
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | cpuconsumptiontime: 28340 s
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | nevents: 400
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | neventsw: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | pid: 553081
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | pgrp: 553081
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | corecount: 8
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | event service: False
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | sizes: {0: 2393579, 3: 2393785, 11: 2393813, 4459: 2419914, 4460: 2428911, 4465: 2429025}
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | --------------------------------------------------
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | 
[2025-05-18 08:12:52] 2025-05-18 12:12:32,329 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | job 6644585294 has completed (purged errors)
[2025-05-18 08:12:52] 2025-05-18 12:12:32,348 | INFO     | overall cleanup function is called
[2025-05-18 08:12:52] 2025-05-18 12:12:33,356 | INFO     | --- collectZombieJob: --- 10, [553081]
[2025-05-18 08:12:52] 2025-05-18 12:12:33,356 | INFO     | zombie collector waiting for pid 553081
[2025-05-18 08:12:52] 2025-05-18 12:12:33,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-18 08:12:52] 2025-05-18 12:12:33,356 | INFO     | collected zombie processes
[2025-05-18 08:12:52] 2025-05-18 12:12:33,356 | INFO     | will attempt to kill all subprocesses of pid=553081
[2025-05-18 08:12:52] 2025-05-18 12:12:33,547 | INFO     | process IDs to be killed: [553081] (in reverse order)
[2025-05-18 08:12:52] 2025-05-18 12:12:33,626 | WARNING  | found no corresponding commands to process id(s)
[2025-05-18 08:12:52] 2025-05-18 12:12:33,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-18 08:12:52] 2025-05-18 12:12:33,635 | INFO     | did not find any defunct processes belonging to 553081
[2025-05-18 08:12:52] 2025-05-18 12:12:33,642 | INFO     | did not find any defunct processes belonging to 553081
[2025-05-18 08:12:52] 2025-05-18 12:12:33,642 | INFO     | ready for new job
[2025-05-18 08:12:52] 2025-05-18 12:12:33,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-18 08:12:52] 2025-05-18 12:12:33,644 | INFO     | **************************************
[2025-05-18 08:12:52] 2025-05-18 12:12:33,644 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-18 08:12:52] 2025-05-18 12:12:33,644 | INFO     | **************************************
[2025-05-18 08:12:52] 2025-05-18 12:12:33,644 | INFO     | 
[2025-05-18 08:12:52] 2025-05-18 12:12:33,658 | INFO     | architecture information:
[2025-05-18 08:12:52] 2025-05-18 12:12:33,658 | INFO     | executing command: cat /etc/os-release
[2025-05-18 08:12:52] 2025-05-18 12:12:33,670 | INFO     | cat /etc/os-release:
[2025-05-18 08:12:52] NAME="CentOS Linux"
[2025-05-18 08:12:52] VERSION="7 (Core)"
[2025-05-18 08:12:52] ID="centos"
[2025-05-18 08:12:52] ID_LIKE="rhel fedora"
[2025-05-18 08:12:52] VERSION_ID="7"
[2025-05-18 08:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-18 08:12:52] ANSI_COLOR="0;31"
[2025-05-18 08:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-18 08:12:52] HOME_URL="https://www.centos.org/"
[2025-05-18 08:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-18 08:12:52] 
[2025-05-18 08:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-18 08:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-18 08:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-18 08:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-18 08:12:52] 
[2025-05-18 08:12:52] 2025-05-18 12:12:33,670 | INFO     | **************************************
[2025-05-18 08:12:52] 2025-05-18 12:12:34,173 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | INFO     | sufficient remaining disk space (86514860032 B)
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | INFO     | current server update state: UPDATING_FINAL
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | INFO     | update_server=False
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-18 08:12:52] 2025-05-18 12:12:34,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-18 08:12:52] 2025-05-18 12:12:34,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-18 08:12:52] 2025-05-18 12:12:34,187 | INFO     | aborting loop
[2025-05-18 08:12:52] 2025-05-18 12:12:34,542 | INFO     | all data control threads have been joined
[2025-05-18 08:12:52] 2025-05-18 12:12:34,595 | INFO     | found 0 job(s) in 20 queues
[2025-05-18 08:12:52] 2025-05-18 12:12:34,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-18 08:12:52] 2025-05-18 12:12:34,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-18 08:12:52] 2025-05-18 12:12:34,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-18 08:12:52] 2025-05-18 12:12:35,191 | INFO     | [job] retrieve thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:35,192 | INFO     | [job] queue monitor thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:35,192 | INFO     | [job] job monitor thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:35,257 | INFO     | all job control threads have been joined
[2025-05-18 08:12:52] 2025-05-18 12:12:35,547 | INFO     | [data] control thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:35,559 | INFO     | all payload control threads have been joined
[2025-05-18 08:12:52] 2025-05-18 12:12:35,569 | INFO     | [payload] failed_post thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:35,743 | INFO     | [payload] execute_payloads thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,132 | INFO     | [job] validate thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,263 | INFO     | [job] control thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,269 | INFO     | [job] create_data_payload thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,363 | INFO     | [payload] validate_pre thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,402 | INFO     | [payload] validate_post thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,564 | INFO     | [payload] control thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,634 | INFO     | [data] copytool_in thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:36,644 | INFO     | [data] copytool_out thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:37,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-18 08:12:52] 2025-05-18 12:12:41,209 | INFO     | [data] queue_monitor thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:44,956 | INFO     | job.realtimelogging is not enabled
[2025-05-18 08:12:52] 2025-05-18 12:12:45,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-18 08:12:52] 2025-05-18 12:12:47,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819811145536)>', '<ExcThread(monitor, started 139819103549184)>']
[2025-05-18 08:12:52] 2025-05-18 12:12:47,660 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-18 08:12:52] 2025-05-18 12:12:47,660 | INFO     | [monitor] control thread has ended
[2025-05-18 08:12:52] 2025-05-18 12:12:50,073 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-05-18 08:12:52] 2025-05-18 12:12:52,491 | INFO     | all workflow threads have been joined
[2025-05-18 08:12:52] 2025-05-18 12:12:52,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-18 08:12:52] 2025-05-18 12:12:52,491 | INFO     | traces error code: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:52,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-18 08:12:52] 2025-05-18 12:12:52,573 [wrapper] ==== pilot stdout END ====
[2025-05-18 08:12:52] 2025-05-18 12:12:52,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-18 08:12:52] 2025-05-18 12:12:52,578 [wrapper] pilotpid: 546178
[2025-05-18 08:12:52] 2025-05-18 12:12:52,580 [wrapper] Pilot exit status: 0
[2025-05-18 08:12:52] 2025-05-18 12:12:52,589 [wrapper] pandaids: 6644585294
[2025-05-18 08:12:52] 2025-05-18 12:12:52,646 [wrapper] cleanup supervisor_pilot  882997 546179
[2025-05-18 08:12:52] 2025-05-18 12:12:52,648 [wrapper] Test setup, not cleaning
[2025-05-18 08:12:52] 2025-05-18 12:12:52,650 [wrapper] apfmon messages muted
[2025-05-18 08:12:52] 2025-05-18 12:12:52,652 [wrapper] ==== wrapper stdout END ====
[2025-05-18 08:12:52] 2025-05-18 12:12:52,654 [wrapper] ==== wrapper stderr END ====
[2025-05-18 08:12:52]  *** Error codes and diagnostics ***
[2025-05-18 08:12:52]     "exeErrorCode": 0,
[2025-05-18 08:12:52]     "exeErrorDiag": "",
[2025-05-18 08:12:52]     "pilotErrorCode": 0,
[2025-05-18 08:12:52]     "pilotErrorDiag": "",
[2025-05-18 08:12:52]  *** Listing of results directory ***
[2025-05-18 08:12:52] total 411432
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas    495897 May 11 06:23 pilot3.tar.gz
[2025-05-18 08:12:52] -rwx------. 1 boincer umatlas     37140 May 11 06:52 runpilot2-wrapper.sh
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas      5111 May 11 06:52 queuedata.json
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas       100 May 18 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-18 08:12:52] -rwxr-xr-x. 1 boincer umatlas      7986 May 18 06:57 run_atlas
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas       105 May 18 06:57 job.xml
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas 212472570 May 18 06:57 EVNT.44270667._000061.pool.root.1
[2025-05-18 08:12:52] drwxrwx--x. 2 boincer umatlas      4096 May 18 06:57 shared
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas    508872 May 18 06:57 input.tar.gz
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas     17569 May 18 06:57 start_atlas.sh
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas         0 May 18 06:57 boinc_lockfile
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas      2482 May 18 06:57 pandaJob.out
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas       467 May 18 06:57 setup.sh.local
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas    994635 May 18 06:57 agis_schedconf.cvmfs.json
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas   1596741 May 18 06:57 agis_ddmendpoints.agis.ALL.json
[2025-05-18 08:12:52] drwx------. 4 boincer umatlas      4096 May 18 06:57 pilot3
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas      6897 May 18 08:10 init_data.xml
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas        95 May 18 08:11 pilot_heartbeat.json
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas 203475372 May 18 08:12 HITS.44270670._008805.pool.root.1
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas       529 May 18 08:12 boinc_task_state.xml
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas      1023 May 18 08:12 memory_monitor_summary.json
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas    314141 May 18 08:12 log.44270670._008805.job.log.tgz.1
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas      7675 May 18 08:12 heartbeat.json
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas      8192 May 18 08:12 boinc_mmap_file
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas        27 May 18 08:12 wrapper_checkpoint.txt
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas      4425 May 18 08:12 pilotlog.txt
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas    448528 May 18 08:12 log.44270670._008805.job.log.1
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas       357 May 18 08:12 output.list
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas       620 May 18 08:12 runtime_log
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas    778240 May 18 08:12 result.tar.gz
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas     11418 May 18 08:12 runtime_log.err
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas       651 May 18 08:12 mwSMDmuTJY7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnIFKDm9Y4j4m.diag
[2025-05-18 08:12:52] -rw-r--r--. 1 boincer umatlas     21136 May 18 08:12 stderr.txt
[2025-05-18 08:12:52] HITS file was successfully produced:
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas 203475372 May 18 08:12 shared/HITS.pool.root.1
[2025-05-18 08:12:52]  *** Contents of shared directory: ***
[2025-05-18 08:12:52] total 407484
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas 212472570 May 18 06:57 ATLAS.root_0
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas    508872 May 18 06:57 input.tar.gz
[2025-05-18 08:12:52] -rw-r--r--. 2 boincer umatlas     17569 May 18 06:57 start_atlas.sh
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas 203475372 May 18 08:12 HITS.pool.root.1
[2025-05-18 08:12:52] -rw-------. 1 boincer umatlas    778240 May 18 08:12 result.tar.gz
08:12:54 (541734): run_atlas exited; CPU time 28371.853456
08:12:54 (541734): called boinc_finish(0)

</stderr_txt>
]]>

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