Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:47:28 (847822): wrapper (7.7.26015): starting
10:47:28 (847822): wrapper: running run_atlas (--nthreads 2)
[2025-05-18 10:47:28] Arguments: --nthreads 2
[2025-05-18 10:47:28] Threads: 2
[2025-05-18 10:47:28] Checking for CVMFS
[2025-05-18 10:47:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-18 10:47:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-18 10:47:28] Running cvmfs_config stat atlas.cern.ch
[2025-05-18 10:47:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-18 10:47:29] 2.9.2.0 141177 3668 59424 146129 2 55 24455307 36864000 0 130560 0 1790285 99.988 783991 7197 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-18 10:47:29] CVMFS is ok
[2025-05-18 10:47:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-18 10:47:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-18 10:47:29] Further information can be found at the LHC@home message board.
[2025-05-18 10:47:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-18 10:47:29] Checking for apptainer binary...
[2025-05-18 10:47:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-18 10:47:29] Running /usr/bin/apptainer --version
[2025-05-18 10:47:29] apptainer version 1.3.6-6.1
[2025-05-18 10:47:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-18 10:47:29] thA310
[2025-05-18 10:47:29] apptainer works
[2025-05-18 10:47:29] Set ATHENA_PROC_NUMBER=2
[2025-05-18 10:47:29] Set ATHENA_CORE_NUMBER=2
[2025-05-18 10:47:29] Starting ATLAS job with PandaID=6653404656
[2025-05-18 10:47:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-18 13:36:19]  *** The last 200 lines of the pilot log: ***
[2025-05-18 13:36:19] 2025-05-18 11:36:00,194 | INFO     | mean y: 2281397.515151515
[2025-05-18 13:36:19] 2025-05-18 11:36:00,194 | INFO     | -- intersect: -28764977370.173416
[2025-05-18 13:36:19] 2025-05-18 11:36:00,194 | INFO     | intersect: -28764977370.173416
[2025-05-18 13:36:19] 2025-05-18 11:36:00,194 | INFO     | chi2: 3.141913959322694
[2025-05-18 13:36:19] 2025-05-18 11:36:00,194 | INFO     | sum of square deviations: 1270051720.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | sum of deviations: 22413898560.000004
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | mean x: 1747562941.5
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | mean y: 2280759.425
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | -- intersect: -30838745539.878952
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | intersect: -30838745539.878952
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | chi2: 3.1469562061334226
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | current chi2=3.1469562061334226 (change=-0.1604832874486384 %)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | right removable region: 159
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | sum of square deviations: 1270051720.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,195 | INFO     | sum of deviations: -8140103032.000001
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | mean x: 1747563246.5
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | mean y: 2319751.5875
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | -- intersect: 11202922575.420858
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | intersect: 11202922575.420858
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | chi2: 1.168733764987847
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | current chi2=1.168733764987847 (change=62.801853261449835 %)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | sum of square deviations: 1154663510.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | sum of deviations: -29535506917.999996
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | mean x: 1747563399.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | mean y: 2348031.2258064514
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | -- intersect: 44703830682.91893
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | intersect: 44703830682.91893
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | chi2: 0.3022328741477586
[2025-05-18 13:36:19] 2025-05-18 11:36:00,196 | INFO     | current chi2=0.3022328741477586 (change=74.1401435295316 %)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | sum of square deviations: 1046484737.5
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | sum of deviations: -22849329949.5
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | mean x: 1747563551.5
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | mean y: 2338569.553333333
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | -- intersect: 38159279387.75952
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | intersect: 38159279387.75952
[2025-05-18 13:36:19] 2025-05-18 11:36:00,197 | INFO     | chi2: 0.27396559542613697
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | current chi2=0.27396559542613697 (change=9.352814051525735 %)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | left removable region: 30
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | sum of square deviations: 665612480.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | sum of deviations: 1278311547.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | mean x: 1747563826.0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | mean y: 2299272.96124031
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | -- intersect: -3353904351.5490737
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | intersect: -3353904351.5490737
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | chi2: 0.0018071747014764342
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | -- intersect: -3353904351.5490737
[2025-05-18 13:36:19] 2025-05-18 11:36:00,198 | INFO     | current memory leak: 1.92 B/s (using 129 data points, chi2=0.00)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | ..............................
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . Timing measurements:
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . get job = 0 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . initial setup = 1 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . payload setup = 8 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . stage-in = 0 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . payload execution = 10055 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . stage-out = 0 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | . log creation = 0 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | ..............................
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | sufficient remaining disk space (496195600384 B)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,199 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,228 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6653404656: 2517235 B (within 2537553920 B limit)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,229 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6653404656/HITS.44638099._055922.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,229 | INFO     | total size of present files: 0 B (workdir size: 2517235 B)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,229 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6653404656/HITS.44638099._055922.pool.root.1 since it does not exist
[2025-05-18 13:36:19] 2025-05-18 11:36:00,263 | INFO     | number of running child processes to parent process 857870: 1
[2025-05-18 13:36:19] 2025-05-18 11:36:00,263 | INFO     | maximum number of monitored processes: 6
[2025-05-18 13:36:19] 2025-05-18 11:36:00,263 | INFO     | aborting job monitoring since job object (job id=6653404656) has expired
[2025-05-18 13:36:19] 2025-05-18 11:36:00,580 | INFO     | 
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | job summary report
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | --------------------------------------------------
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | PanDA job id: 6653404656
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | task id: 44638099
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | errors: (none)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | pilot state: finished 
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | transexitcode: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | exeerrorcode: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | exeerrordiag: 
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | exitcode: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,582 | INFO     | exitmsg: OK
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | cpuconsumptiontime: 18817 s
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | nevents: 400
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | neventsw: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | pid: 857870
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | pgrp: 857870
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | corecount: 2
[2025-05-18 13:36:19] 2025-05-18 11:36:00,583 | INFO     | event service: False
[2025-05-18 13:36:19] 2025-05-18 11:36:00,584 | INFO     | sizes: {0: 2393665, 7: 2393871, 11: 2393899, 10066: 2431433, 10067: 2431433, 10078: 2431603}
[2025-05-18 13:36:19] 2025-05-18 11:36:00,584 | INFO     | --------------------------------------------------
[2025-05-18 13:36:19] 2025-05-18 11:36:00,584 | INFO     | 
[2025-05-18 13:36:19] 2025-05-18 11:36:00,584 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | job 6653404656 has completed (purged errors)
[2025-05-18 13:36:19] 2025-05-18 11:36:00,596 | INFO     | overall cleanup function is called
[2025-05-18 13:36:19] 2025-05-18 11:36:01,603 | INFO     | --- collectZombieJob: --- 10, [857870]
[2025-05-18 13:36:19] 2025-05-18 11:36:01,603 | INFO     | zombie collector waiting for pid 857870
[2025-05-18 13:36:19] 2025-05-18 11:36:01,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-18 13:36:19] 2025-05-18 11:36:01,603 | INFO     | collected zombie processes
[2025-05-18 13:36:19] 2025-05-18 11:36:01,604 | INFO     | will attempt to kill all subprocesses of pid=857870
[2025-05-18 13:36:19] 2025-05-18 11:36:01,641 | INFO     | process IDs to be killed: [857870] (in reverse order)
[2025-05-18 13:36:19] 2025-05-18 11:36:01,664 | WARNING  | found no corresponding commands to process id(s)
[2025-05-18 13:36:19] 2025-05-18 11:36:01,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-18 13:36:19] 2025-05-18 11:36:01,665 | INFO     | did not find any defunct processes belonging to 857870
[2025-05-18 13:36:19] 2025-05-18 11:36:01,666 | INFO     | did not find any defunct processes belonging to 857870
[2025-05-18 13:36:19] 2025-05-18 11:36:01,666 | INFO     | ready for new job
[2025-05-18 13:36:19] 2025-05-18 11:36:01,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-18 13:36:19] 2025-05-18 11:36:01,666 | INFO     | **************************************
[2025-05-18 13:36:19] 2025-05-18 11:36:01,666 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-18 13:36:19] 2025-05-18 11:36:01,667 | INFO     | **************************************
[2025-05-18 13:36:19] 2025-05-18 11:36:01,667 | INFO     | 
[2025-05-18 13:36:19] 2025-05-18 11:36:01,667 | INFO     | architecture information:
[2025-05-18 13:36:19] 2025-05-18 11:36:01,667 | INFO     | executing command: cat /etc/os-release
[2025-05-18 13:36:19] 2025-05-18 11:36:01,675 | INFO     | cat /etc/os-release:
[2025-05-18 13:36:19] NAME="CentOS Linux"
[2025-05-18 13:36:19] VERSION="7 (Core)"
[2025-05-18 13:36:19] ID="centos"
[2025-05-18 13:36:19] ID_LIKE="rhel fedora"
[2025-05-18 13:36:19] VERSION_ID="7"
[2025-05-18 13:36:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-18 13:36:19] ANSI_COLOR="0;31"
[2025-05-18 13:36:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-18 13:36:19] HOME_URL="https://www.centos.org/"
[2025-05-18 13:36:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-18 13:36:19] 
[2025-05-18 13:36:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-18 13:36:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-18 13:36:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-18 13:36:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-18 13:36:19] 
[2025-05-18 13:36:19] 2025-05-18 11:36:01,675 | INFO     | **************************************
[2025-05-18 13:36:19] 2025-05-18 11:36:02,179 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | INFO     | sufficient remaining disk space (496199794688 B)
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | INFO     | current server update state: UPDATING_FINAL
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | INFO     | update_server=False
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-18 13:36:19] 2025-05-18 11:36:02,191 | INFO     | aborting loop
[2025-05-18 13:36:19] 2025-05-18 11:36:02,444 | INFO     | all data control threads have been joined
[2025-05-18 13:36:19] 2025-05-18 11:36:02,971 | INFO     | PID=851459 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-18 13:36:19] 2025-05-18 11:36:02,971 | INFO     | found 0 job(s) in 20 queues
[2025-05-18 13:36:19] 2025-05-18 11:36:02,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-18 13:36:19] 2025-05-18 11:36:02,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-18 13:36:19] 2025-05-18 11:36:02,979 | INFO     | all payload control threads have been joined
[2025-05-18 13:36:19] 2025-05-18 11:36:03,196 | INFO     | [job] retrieve thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,196 | INFO     | [job] job monitor thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,197 | INFO     | [job] queue monitor thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,256 | INFO     | [job] create_data_payload thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,256 | INFO     | [payload] validate_pre thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-18 13:36:19] 2025-05-18 11:36:03,373 | INFO     | [payload] validate_post thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,450 | INFO     | [data] control thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,593 | INFO     | [payload] failed_post thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,633 | INFO     | all job control threads have been joined
[2025-05-18 13:36:19] 2025-05-18 11:36:03,942 | INFO     | [payload] execute_payloads thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,943 | INFO     | [data] copytool_in thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:03,985 | INFO     | [payload] control thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:04,197 | INFO     | [data] copytool_out thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:04,456 | INFO     | [job] validate thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:04,638 | INFO     | [job] control thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:07,298 | INFO     | [data] queue_monitor thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:12,244 | INFO     | job.realtimelogging is not enabled
[2025-05-18 13:36:19] 2025-05-18 11:36:13,249 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-18 13:36:19] 2025-05-18 11:36:13,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007518574400)>', '<ExcThread(monitor, started 140007167731456)>']
[2025-05-18 13:36:19] 2025-05-18 11:36:14,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-18 13:36:19] 2025-05-18 11:36:14,023 | INFO     | [monitor] control thread has ended
[2025-05-18 13:36:19] 2025-05-18 11:36:18,563 | INFO     | all workflow threads have been joined
[2025-05-18 13:36:19] 2025-05-18 11:36:18,564 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-18 13:36:19] 2025-05-18 11:36:18,565 | INFO     | traces error code: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:18,565 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-18 13:36:19] 2025-05-18 11:36:18,608 [wrapper] ==== pilot stdout END ====
[2025-05-18 13:36:19] 2025-05-18 11:36:18,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-18 13:36:19] 2025-05-18 11:36:18,613 [wrapper] pilotpid: 851459
[2025-05-18 13:36:19] 2025-05-18 11:36:18,616 [wrapper] Pilot exit status: 0
[2025-05-18 13:36:19] 2025-05-18 11:36:18,622 [wrapper] pandaids: 6653404656
[2025-05-18 13:36:19] 2025-05-18 11:36:18,637 [wrapper] cleanup supervisor_pilot  877057 851460
[2025-05-18 13:36:19] 2025-05-18 11:36:18,639 [wrapper] Test setup, not cleaning
[2025-05-18 13:36:19] 2025-05-18 11:36:18,642 [wrapper] apfmon messages muted
[2025-05-18 13:36:19] 2025-05-18 11:36:18,644 [wrapper] ==== wrapper stdout END ====
[2025-05-18 13:36:19] 2025-05-18 11:36:18,646 [wrapper] ==== wrapper stderr END ====
[2025-05-18 13:36:19]  *** Error codes and diagnostics ***
[2025-05-18 13:36:19]     "exeErrorCode": 0,
[2025-05-18 13:36:19]     "exeErrorDiag": "",
[2025-05-18 13:36:19]     "pilotErrorCode": 0,
[2025-05-18 13:36:19]     "pilotErrorDiag": "",
[2025-05-18 13:36:19]  *** Listing of results directory ***
[2025-05-18 13:36:19] total 412828
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc      5111 May 17 14:46 queuedata.json
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc    495897 May 17 14:46 pilot3.tar.gz
[2025-05-18 13:36:19] -rwx------ 1 boinc boinc     37140 May 17 14:47 runpilot2-wrapper.sh
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc       100 May 18 10:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-18 13:36:19] -rwxr-xr-x 1 boinc boinc      7986 May 18 10:47 run_atlas
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc       105 May 18 10:47 job.xml
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc 222834937 May 18 10:47 EVNT.44638096._002239.pool.root.1
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc      6689 May 18 10:47 init_data.xml
[2025-05-18 13:36:19] drwxrwx--x 2 boinc boinc      4096 May 18 10:47 shared
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc    508887 May 18 10:47 input.tar.gz
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc     17569 May 18 10:47 start_atlas.sh
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc         0 May 18 10:47 boinc_lockfile
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc      2539 May 18 10:47 pandaJob.out
[2025-05-18 13:36:19] -rw------- 1 boinc boinc       424 May 18 10:47 setup.sh.local
[2025-05-18 13:36:19] -rw------- 1 boinc boinc    994627 May 18 10:47 agis_schedconf.cvmfs.json
[2025-05-18 13:36:19] -rw------- 1 boinc boinc   1596741 May 18 10:47 agis_ddmendpoints.agis.ALL.json
[2025-05-18 13:36:19] drwx------ 4 boinc boinc      4096 May 18 10:47 pilot3
[2025-05-18 13:36:19] -rw------- 1 boinc boinc 193652261 May 18 13:35 HITS.44638099._055922.pool.root.1
[2025-05-18 13:36:19] -rw------- 1 boinc boinc        95 May 18 13:35 pilot_heartbeat.json
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc       531 May 18 13:35 boinc_task_state.xml
[2025-05-18 13:36:19] -rw------- 1 boinc boinc      1019 May 18 13:35 memory_monitor_summary.json
[2025-05-18 13:36:19] -rw------- 1 boinc boinc    269482 May 18 13:35 log.44638099._055922.job.log.tgz.1
[2025-05-18 13:36:19] -rw------- 1 boinc boinc      7659 May 18 13:36 heartbeat.json
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc      8192 May 18 13:36 boinc_mmap_file
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc        28 May 18 13:36 wrapper_checkpoint.txt
[2025-05-18 13:36:19] -rw------- 1 boinc boinc      4747 May 18 13:36 pilotlog.txt
[2025-05-18 13:36:19] -rw------- 1 boinc boinc    935420 May 18 13:36 log.44638099._055922.job.log.1
[2025-05-18 13:36:19] -rw------- 1 boinc boinc       357 May 18 13:36 output.list
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc       620 May 18 13:36 runtime_log
[2025-05-18 13:36:19] -rw------- 1 boinc boinc   1218560 May 18 13:36 result.tar.gz
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc     11100 May 18 13:36 runtime_log.err
[2025-05-18 13:36:19] -rw------- 1 boinc boinc       661 May 18 13:36 jwLMDmO8Va7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLYOKDmMX5dHo.diag
[2025-05-18 13:36:19] -rw-r--r-- 1 boinc boinc     21253 May 18 13:36 stderr.txt
[2025-05-18 13:36:19] HITS file was successfully produced:
[2025-05-18 13:36:19] -rw------- 1 boinc boinc 193652261 May 18 13:35 shared/HITS.pool.root.1
[2025-05-18 13:36:19]  *** Contents of shared directory: ***
[2025-05-18 13:36:19] total 408448
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc 222834937 May 18 10:47 ATLAS.root_0
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc    508887 May 18 10:47 input.tar.gz
[2025-05-18 13:36:19] -rw-r--r-- 2 boinc boinc     17569 May 18 10:47 start_atlas.sh
[2025-05-18 13:36:19] -rw------- 1 boinc boinc 193652261 May 18 13:35 HITS.pool.root.1
[2025-05-18 13:36:19] -rw------- 1 boinc boinc   1218560 May 18 13:36 result.tar.gz
13:36:20 (847822): run_atlas exited; CPU time 18864.675580
13:36:20 (847822): called boinc_finish(0)

</stderr_txt>
]]>

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