Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:26:46 (31718): wrapper (7.7.26015): starting
07:26:46 (31718): wrapper: running run_atlas (--nthreads 8)
[2025-05-18 07:26:46] Arguments: --nthreads 8
[2025-05-18 07:26:46] Threads: 8
[2025-05-18 07:26:46] Checking for CVMFS
[2025-05-18 07:26:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-18 07:26:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-18 07:26:47] Running cvmfs_config stat atlas.cern.ch
[2025-05-18 07:26:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-18 07:26:49] 2.11.2.0 22842 8306 73588 146124 0 59 22863814 25165824 4637 130560 0 7030864 99.781 7447275 1097 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-18 07:26:49] CVMFS is ok
[2025-05-18 07:26:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-18 07:26:49] Checking for apptainer binary...
[2025-05-18 07:26:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-18 07:26:49] Running /usr/bin/apptainer --version
[2025-05-18 07:26:49] apptainer version 1.3.2-1.el7
[2025-05-18 07:26:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-18 07:27:08] cg-vwn428.simple-grid.lan
[2025-05-18 07:27:08] apptainer works
[2025-05-18 07:27:08] Set ATHENA_PROC_NUMBER=8
[2025-05-18 07:27:08] Set ATHENA_CORE_NUMBER=8
[2025-05-18 07:27:09] Starting ATLAS job with PandaID=6653404459
[2025-05-18 07:27:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-18 13:05:41]  *** The last 200 lines of the pilot log: ***
[2025-05-18 13:05:41] 2025-05-18 10:40:42,314 | INFO     | mean y: 2461746.1271477663
[2025-05-18 13:05:41] 2025-05-18 10:40:42,314 | INFO     | -- intersect: -38785380654.378456
[2025-05-18 13:05:41] 2025-05-18 10:40:42,315 | INFO     | intersect: -38785380654.378456
[2025-05-18 13:05:41] 2025-05-18 10:40:42,315 | INFO     | chi2: 9.806328571936533
[2025-05-18 13:05:41] 2025-05-18 10:40:42,315 | INFO     | current chi2=9.806328571936533 (change=6.6789437503858 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,315 | INFO     | right removable region: 290
[2025-05-18 13:05:41] 2025-05-18 10:40:42,316 | INFO     | sum of square deviations: 7641036290.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,319 | INFO     | sum of deviations: 50050967687.00002
[2025-05-18 13:05:41] 2025-05-18 10:40:42,319 | INFO     | mean x: 1747555842.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,319 | INFO     | mean y: 2493899.821305842
[2025-05-18 13:05:41] 2025-05-18 10:40:42,319 | INFO     | -- intersect: -11444495442.925306
[2025-05-18 13:05:41] 2025-05-18 10:40:42,319 | INFO     | intersect: -11444495442.925306
[2025-05-18 13:05:41] 2025-05-18 10:40:42,320 | INFO     | chi2: 5.553722754628276
[2025-05-18 13:05:41] 2025-05-18 10:40:42,320 | INFO     | current chi2=5.553722754628276 (change=47.14848989838824 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,320 | INFO     | sum of square deviations: 7253894147.5
[2025-05-18 13:05:41] 2025-05-18 10:40:42,323 | INFO     | sum of deviations: -23439271411.00001
[2025-05-18 13:05:41] 2025-05-18 10:40:42,323 | INFO     | mean x: 1747555994.5
[2025-05-18 13:05:41] 2025-05-18 10:40:42,323 | INFO     | mean y: 2522811.93006993
[2025-05-18 13:05:41] 2025-05-18 10:40:42,324 | INFO     | -- intersect: 5649343461.377043
[2025-05-18 13:05:41] 2025-05-18 10:40:42,324 | INFO     | intersect: 5649343461.377043
[2025-05-18 13:05:41] 2025-05-18 10:40:42,324 | INFO     | chi2: 3.047053645497397
[2025-05-18 13:05:41] 2025-05-18 10:40:42,324 | INFO     | current chi2=3.047053645497397 (change=45.13493416721081 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,325 | INFO     | sum of square deviations: 6880054580.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,327 | INFO     | sum of deviations: -78407983152.99998
[2025-05-18 13:05:41] 2025-05-18 10:40:42,327 | INFO     | mean x: 1747556147.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,328 | INFO     | mean y: 2545235.893238434
[2025-05-18 13:05:41] 2025-05-18 10:40:42,329 | INFO     | -- intersect: 19918426910.904247
[2025-05-18 13:05:41] 2025-05-18 10:40:42,329 | INFO     | intersect: 19918426910.904247
[2025-05-18 13:05:41] 2025-05-18 10:40:42,330 | INFO     | chi2: 1.650267593486276
[2025-05-18 13:05:41] 2025-05-18 10:40:42,330 | INFO     | current chi2=1.650267593486276 (change=45.840546787718644 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,330 | INFO     | sum of square deviations: 6519285025.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,333 | INFO     | sum of deviations: -107996153140.00003
[2025-05-18 13:05:41] 2025-05-18 10:40:42,333 | INFO     | mean x: 1747556299.5
[2025-05-18 13:05:41] 2025-05-18 10:40:42,333 | INFO     | mean y: 2557665.4710144927
[2025-05-18 13:05:41] 2025-05-18 10:40:42,333 | INFO     | -- intersect: 28951952732.236603
[2025-05-18 13:05:41] 2025-05-18 10:40:42,333 | INFO     | intersect: 28951952732.236603
[2025-05-18 13:05:41] 2025-05-18 10:40:42,334 | INFO     | chi2: 1.052231528581283
[2025-05-18 13:05:41] 2025-05-18 10:40:42,334 | INFO     | current chi2=1.052231528581283 (change=36.238732873715996 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,334 | INFO     | sum of square deviations: 6171352920.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,337 | INFO     | sum of deviations: -105139320925.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,337 | INFO     | mean x: 1747556452.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,337 | INFO     | mean y: 2556394.4723247234
[2025-05-18 13:05:41] 2025-05-18 10:40:42,337 | INFO     | -- intersect: 29775104006.50913
[2025-05-18 13:05:41] 2025-05-18 10:40:42,337 | INFO     | intersect: 29775104006.50913
[2025-05-18 13:05:41] 2025-05-18 10:40:42,338 | INFO     | chi2: 1.0414096367653713
[2025-05-18 13:05:41] 2025-05-18 10:40:42,338 | INFO     | current chi2=1.0414096367653713 (change=1.0284705905460598 %)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,338 | INFO     | left removable region: 50
[2025-05-18 13:05:41] 2025-05-18 10:40:42,338 | INFO     | sum of square deviations: 4286517580.0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,340 | INFO     | sum of deviations: -44709578113.500015
[2025-05-18 13:05:41] 2025-05-18 10:40:42,340 | INFO     | mean x: 1747557031.5
[2025-05-18 13:05:41] 2025-05-18 10:40:42,340 | INFO     | mean y: 2545156.5875
[2025-05-18 13:05:41] 2025-05-18 10:40:42,340 | INFO     | -- intersect: 18230054119.153206
[2025-05-18 13:05:41] 2025-05-18 10:40:42,341 | INFO     | intersect: 18230054119.153206
[2025-05-18 13:05:41] 2025-05-18 10:40:42,341 | INFO     | chi2: 0.2029538792062994
[2025-05-18 13:05:41] 2025-05-18 10:40:42,341 | INFO     | -- intersect: 18230054119.153206
[2025-05-18 13:05:41] 2025-05-18 10:40:42,341 | INFO     | current memory leak: -10.43 B/s (using 240 data points, chi2=0.20)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,342 | INFO     | ..............................
[2025-05-18 13:05:41] 2025-05-18 10:40:42,342 | INFO     | . Timing measurements:
[2025-05-18 13:05:41] 2025-05-18 10:40:42,342 | INFO     | . get job = 0 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,342 | INFO     | . initial setup = 2 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | . payload setup = 129 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | . stage-in = 0 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | . payload execution = 18196 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | . stage-out = 3 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | . log creation = 1 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,343 | INFO     | ..............................
[2025-05-18 13:05:41] 2025-05-18 10:40:42,500 | INFO     | 
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | job summary report
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | --------------------------------------------------
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | PanDA job id: 6653404459
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | task id: 44638099
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | errors: (none)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | pilot state: finished 
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | transexitcode: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,501 | INFO     | exeerrorcode: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | exeerrordiag: 
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | exitcode: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | exitmsg: OK
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | cpuconsumptiontime: 66538 s
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | nevents: 400
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | neventsw: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | pid: 14112
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | pgrp: 14112
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | corecount: 8
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | event service: False
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | sizes: {0: 2392885, 1: 2393570, 2: 2393769, 13: 2393769, 24: 2393825, 34: 2393853, 45: 2394009, 56: 2394037, 66: 2394065, 77: 2394093, 88: 2394149, 93: 2394663, 99
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | --------------------------------------------------
[2025-05-18 13:05:41] 2025-05-18 10:40:42,502 | INFO     | 
[2025-05-18 13:05:41] 2025-05-18 10:40:42,503 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-05-18 13:05:41] 2025-05-18 10:40:42,804 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-18 13:05:41] 2025-05-18 10:40:42,806 | INFO     | job 6653404459 has completed (purged errors)
[2025-05-18 13:05:41] 2025-05-18 10:40:42,807 | INFO     | overall cleanup function is called
[2025-05-18 13:05:41] 2025-05-18 10:40:43,816 | INFO     | --- collectZombieJob: --- 10, [14112]
[2025-05-18 13:05:41] 2025-05-18 10:40:43,816 | INFO     | zombie collector waiting for pid 14112
[2025-05-18 13:05:41] 2025-05-18 10:40:43,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-18 13:05:41] 2025-05-18 10:40:43,816 | INFO     | collected zombie processes
[2025-05-18 13:05:41] 2025-05-18 10:40:43,816 | INFO     | will attempt to kill all subprocesses of pid=14112
[2025-05-18 13:05:41] 2025-05-18 10:40:43,923 | INFO     | process IDs to be killed: [14112] (in reverse order)
[2025-05-18 13:05:41] 2025-05-18 10:40:44,636 | WARNING  | found no corresponding commands to process id(s)
[2025-05-18 13:05:41] 2025-05-18 10:40:44,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-18 13:05:41] 2025-05-18 10:40:44,640 | INFO     | did not find any defunct processes belonging to 14112
[2025-05-18 13:05:41] 2025-05-18 10:40:44,643 | INFO     | did not find any defunct processes belonging to 14112
[2025-05-18 13:05:41] 2025-05-18 10:40:44,643 | INFO     | ready for new job
[2025-05-18 13:05:41] 2025-05-18 10:40:44,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-18 13:05:41] 2025-05-18 10:40:44,646 | INFO     | **************************************
[2025-05-18 13:05:41] 2025-05-18 10:40:44,646 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-18 13:05:41] 2025-05-18 10:40:44,646 | INFO     | **************************************
[2025-05-18 13:05:41] 2025-05-18 10:40:44,646 | INFO     | 
[2025-05-18 13:05:41] 2025-05-18 10:40:44,647 | INFO     | pilot is running in a VM
[2025-05-18 13:05:41] 2025-05-18 10:40:44,647 | INFO     | architecture information:
[2025-05-18 13:05:41] 2025-05-18 10:40:44,659 | INFO     | executing command: cat /etc/os-release
[2025-05-18 13:05:41] 2025-05-18 10:40:44,963 | INFO     | cat /etc/os-release:
[2025-05-18 13:05:41] NAME="CentOS Linux"
[2025-05-18 13:05:41] VERSION="7 (Core)"
[2025-05-18 13:05:41] ID="centos"
[2025-05-18 13:05:41] ID_LIKE="rhel fedora"
[2025-05-18 13:05:41] VERSION_ID="7"
[2025-05-18 13:05:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-18 13:05:41] ANSI_COLOR="0;31"
[2025-05-18 13:05:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-18 13:05:41] HOME_URL="https://www.centos.org/"
[2025-05-18 13:05:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-18 13:05:41] 
[2025-05-18 13:05:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-18 13:05:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-18 13:05:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-18 13:05:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-18 13:05:41] 
[2025-05-18 13:05:41] 2025-05-18 10:40:44,963 | INFO     | **************************************
[2025-05-18 13:05:41] 2025-05-18 10:40:45,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-05-18 13:05:41] 2025-05-18 10:40:45,674 | INFO     | sufficient remaining disk space (496304652288 B)
[2025-05-18 13:05:41] 2025-05-18 10:40:45,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-18 13:05:41] 2025-05-18 10:40:45,675 | INFO     | current server update state: UPDATING_FINAL
[2025-05-18 13:05:41] 2025-05-18 10:40:45,675 | INFO     | update_server=False
[2025-05-18 13:05:41] 2025-05-18 10:40:45,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-18 13:05:41] 2025-05-18 10:40:45,678 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-18 13:05:41] 2025-05-18 10:40:45,678 | INFO     | found 0 job(s) in 20 queues
[2025-05-18 13:05:41] 2025-05-18 10:40:45,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-18 13:05:41] 2025-05-18 10:40:45,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-18 13:05:41] 2025-05-18 10:40:45,722 | INFO     | all data control threads have been joined
[2025-05-18 13:05:41] 2025-05-18 10:40:45,835 | INFO     | all job control threads have been joined
[2025-05-18 13:05:41] 2025-05-18 10:40:46,020 | INFO     | all payload control threads have been joined
[2025-05-18 13:05:41] 2025-05-18 10:40:46,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:05:41] 2025-05-18 10:40:46,087 | INFO     | aborting loop
[2025-05-18 13:05:41] 2025-05-18 10:40:46,681 | INFO     | [job] retrieve thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:46,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:46,728 | INFO     | [data] control thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:46,841 | INFO     | [job] control thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:46,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-18 13:05:41] 2025-05-18 10:40:47,026 | INFO     | [payload] control thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,093 | INFO     | [job] job monitor thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,135 | INFO     | [payload] validate_post thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,139 | INFO     | [data] copytool_in thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:05:41] 2025-05-18 10:40:47,616 | INFO     | [job] create_data_payload thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,921 | INFO     | [payload] execute_payloads thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,971 | INFO     | [payload] validate_pre thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:47,993 | INFO     | [job] validate thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:48,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-18 13:05:41] 2025-05-18 10:40:48,267 | INFO     | [payload] failed_post thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:48,524 | INFO     | [job] queue monitor thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:48,885 | INFO     | [data] copytool_out thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:52,238 | INFO     | [data] queue_monitor thread has finished
[2025-05-18 13:05:41] 2025-05-18 10:40:53,716 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139680136714048)>', '<ExcThread(monitor, started 139679684867840)>']
[2025-05-18 13:05:41] 2025-05-18 10:40:53,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-18 13:05:41] 2025-05-18 10:40:53,723 | INFO     | [monitor] control thread has ended
[2025-05-18 13:05:41] 2025-05-18 10:40:58,742 | INFO     | all workflow threads have been joined
[2025-05-18 13:05:41] 2025-05-18 10:40:58,742 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-18 13:05:41] 2025-05-18 10:40:58,742 | INFO     | traces error code: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:58,743 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-18 13:05:41] 2025-05-18 10:40:59,154 [wrapper] ==== pilot stdout END ====
[2025-05-18 13:05:41] 2025-05-18 10:40:59,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-18 13:05:41] 2025-05-18 10:40:59,371 [wrapper] pilotpid: 7558
[2025-05-18 13:05:41] 2025-05-18 10:40:59,450 [wrapper] Pilot exit status: 0
[2025-05-18 13:05:41] 2025-05-18 10:40:59,900 [wrapper] pandaids: 6653404459
[2025-05-18 13:05:41] 2025-05-18 10:41:00,874 [wrapper] cleanup supervisor_pilot  4053 7559
[2025-05-18 13:05:41] 2025-05-18 10:41:01,012 [wrapper] Test setup, not cleaning
[2025-05-18 13:05:41] 2025-05-18 10:41:01,104 [wrapper] apfmon messages muted
[2025-05-18 13:05:41] 2025-05-18 10:41:01,193 [wrapper] ==== wrapper stdout END ====
[2025-05-18 13:05:41] 2025-05-18 10:41:01,291 [wrapper] ==== wrapper stderr END ====
[2025-05-18 13:05:41]  *** Error codes and diagnostics ***
[2025-05-18 13:05:41]     "exeErrorCode": 0,
[2025-05-18 13:05:41]     "exeErrorDiag": "",
[2025-05-18 13:05:41]     "pilotErrorCode": 0,
[2025-05-18 13:05:41]     "pilotErrorDiag": "",
[2025-05-18 13:05:41]  *** Listing of results directory ***
[2025-05-18 13:05:41] total 413732
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc    495897 May 17 14:25 pilot3.tar.gz
[2025-05-18 13:05:41] -rwx------. 1 boinc boinc     37140 May 17 14:33 runpilot2-wrapper.sh
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc      5111 May 17 14:33 queuedata.json
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc       100 May 18 07:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-18 13:05:41] -rwxr-xr-x. 1 boinc boinc      7986 May 18 07:26 run_atlas
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc       105 May 18 07:26 job.xml
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc      6372 May 18 07:26 init_data.xml
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc 220368376 May 18 07:26 EVNT.44638096._002238.pool.root.1
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc     17569 May 18 07:26 start_atlas.sh
[2025-05-18 13:05:41] drwxrwx--x. 2 boinc boinc        68 May 18 07:26 shared
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc    508877 May 18 07:26 input.tar.gz
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc         0 May 18 07:26 boinc_lockfile
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc      2540 May 18 07:27 pandaJob.out
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc       424 May 18 07:27 setup.sh.local
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc    994627 May 18 07:30 agis_schedconf.cvmfs.json
[2025-05-18 13:05:41] drwx------. 4 boinc boinc      4096 May 18 07:30 pilot3
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc 195425102 May 18 12:37 HITS.44638099._055726.pool.root.1
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc       531 May 18 12:37 boinc_task_state.xml
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc      1028 May 18 12:38 memory_monitor_summary.json
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc   1596741 May 18 12:39 agis_ddmendpoints.agis.ALL.json
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc    436033 May 18 12:39 log.44638099._055726.job.log.tgz.1
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc      7696 May 18 12:40 heartbeat.json
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc        95 May 18 12:40 pilot_heartbeat.json
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc      4539 May 18 12:40 pilotlog.txt
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc   1583745 May 18 12:41 log.44638099._055726.job.log.1
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc       357 May 18 12:41 output.list
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc       620 May 18 12:41 runtime_log
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc   2037760 May 18 12:41 result.tar.gz
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc     11013 May 18 12:41 runtime_log.err
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc       657 May 18 12:41 DULMDmBuVa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmVOKDmdCq9Eo.diag
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc      8192 May 18 13:05 boinc_mmap_file
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc        28 May 18 13:05 wrapper_checkpoint.txt
[2025-05-18 13:05:41] -rw-r--r--. 1 boinc boinc     20502 May 18 13:05 stderr.txt
[2025-05-18 13:05:41] HITS file was successfully produced:
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc 195425102 May 18 12:37 shared/HITS.pool.root.1
[2025-05-18 13:05:41]  *** Contents of shared directory: ***
[2025-05-18 13:05:41] total 408564
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc 220368376 May 18 07:26 ATLAS.root_0
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc     17569 May 18 07:26 start_atlas.sh
[2025-05-18 13:05:41] -rw-r--r--. 2 boinc boinc    508877 May 18 07:26 input.tar.gz
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc 195425102 May 18 12:37 HITS.pool.root.1
[2025-05-18 13:05:41] -rw-------. 1 boinc boinc   2037760 May 18 12:41 result.tar.gz
13:05:43 (31718): run_atlas exited; CPU time 66794.061043
13:05:43 (31718): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN