Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:37:55 (2089788): wrapper (7.7.26015): starting
15:37:55 (2089788): wrapper: running run_atlas (--nthreads 9)
[2025-05-17 15:37:55] Arguments: --nthreads 9
[2025-05-17 15:37:55] Threads: 9
[2025-05-17 15:37:55] Checking for CVMFS
[2025-05-17 15:37:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 15:37:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 15:37:56] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 15:37:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 15:37:57] 2.12.6.0 3467197 65821 537444 146111 3 471 30293183 32935936 35330 16776704 0 520020980 99.662 455659925 16057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 15:37:57] CVMFS is ok
[2025-05-17 15:37:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 15:37:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 15:37:57] Further information can be found at the LHC@home message board.
[2025-05-17 15:37:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 15:37:57] Checking for apptainer binary...
[2025-05-17 15:37:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 15:37:57] Running /usr/bin/apptainer --version
[2025-05-17 15:37:57] apptainer version 1.4.0-1.el9
[2025-05-17 15:37:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 15:37:58] lc-10-11.aglt2.org
[2025-05-17 15:37:58] apptainer works
[2025-05-17 15:37:58] Set ATHENA_PROC_NUMBER=9
[2025-05-17 15:37:58] Set ATHENA_CORE_NUMBER=9
[2025-05-17 15:37:58] Starting ATLAS job with PandaID=6653400151
[2025-05-17 15:37:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:13:07 (2706001): wrapper (7.7.26015): starting
16:13:07 (2706001): wrapper: running run_atlas (--nthreads 9)
[2025-05-17 16:13:07] Arguments: --nthreads 9
[2025-05-17 16:13:07] Threads: 9
[2025-05-17 16:13:07] This job has been restarted, cleaning up previous attempt
[2025-05-17 16:13:07] Checking for CVMFS
[2025-05-17 16:13:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 16:13:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 16:13:08] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 16:13:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 16:13:09] 2.12.6.0 3467197 65857 554436 146111 0 779 30329821 32935936 39747 16776704 0 520633517 99.663 455659930 16057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 16:13:09] CVMFS is ok
[2025-05-17 16:13:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 16:13:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 16:13:09] Further information can be found at the LHC@home message board.
[2025-05-17 16:13:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 16:13:09] Checking for apptainer binary...
[2025-05-17 16:13:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 16:13:09] Running /usr/bin/apptainer --version
[2025-05-17 16:13:09] apptainer version 1.4.0-1.el9
[2025-05-17 16:13:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 16:13:10] lc-10-11.aglt2.org
[2025-05-17 16:13:10] apptainer works
[2025-05-17 16:13:10] Set ATHENA_PROC_NUMBER=9
[2025-05-17 16:13:10] Set ATHENA_CORE_NUMBER=9
[2025-05-17 16:13:10] Starting ATLAS job with PandaID=6653400151
[2025-05-17 16:13:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 20:02:41]  *** The last 200 lines of the pilot log: ***
[2025-05-17 20:02:41] 2025-05-18 00:02:22,850 | INFO     | mean x: 1747519691.0896862
[2025-05-17 20:02:41] 2025-05-18 00:02:22,850 | INFO     | mean y: 2168392.6502242154
[2025-05-17 20:02:41] 2025-05-18 00:02:22,850 | INFO     | -- intersect: -44330486522.58695
[2025-05-17 20:02:41] 2025-05-18 00:02:22,850 | INFO     | intersect: -44330486522.58695
[2025-05-17 20:02:41] 2025-05-18 00:02:22,850 | INFO     | chi2: 6.389816679830379
[2025-05-17 20:02:41] 2025-05-18 00:02:22,851 | INFO     | sum of square deviations: 3212504780.6651497
[2025-05-17 20:02:41] 2025-05-18 00:02:22,852 | INFO     | sum of deviations: 98844129802.19731
[2025-05-17 20:02:41] 2025-05-18 00:02:22,852 | INFO     | mean x: 1747519538.5917432
[2025-05-17 20:02:41] 2025-05-18 00:02:22,852 | INFO     | mean y: 2176046.6651376146
[2025-05-17 20:02:41] 2025-05-18 00:02:22,853 | INFO     | -- intersect: -53766474865.248535
[2025-05-17 20:02:41] 2025-05-18 00:02:22,853 | INFO     | intersect: -53766474865.248535
[2025-05-17 20:02:41] 2025-05-18 00:02:22,853 | INFO     | chi2: 5.57796280404453
[2025-05-17 20:02:41] 2025-05-18 00:02:22,853 | INFO     | current chi2=5.57796280404453 (change=12.705432979767432 %)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,853 | INFO     | right removable region: 217
[2025-05-17 20:02:41] 2025-05-18 00:02:22,854 | INFO     | sum of square deviations: 3212492580.6651497
[2025-05-17 20:02:41] 2025-05-18 00:02:22,855 | INFO     | sum of deviations: 34288369357.34859
[2025-05-17 20:02:41] 2025-05-18 00:02:22,855 | INFO     | mean x: 1747519843.5917432
[2025-05-17 20:02:41] 2025-05-18 00:02:22,855 | INFO     | mean y: 2204010.0825688075
[2025-05-17 20:02:41] 2025-05-18 00:02:22,855 | INFO     | -- intersect: -18649856454.431664
[2025-05-17 20:02:41] 2025-05-18 00:02:22,855 | INFO     | intersect: -18649856454.431664
[2025-05-17 20:02:41] 2025-05-18 00:02:22,860 | INFO     | chi2: 3.4065204451368465
[2025-05-17 20:02:41] 2025-05-18 00:02:22,860 | INFO     | current chi2=3.4065204451368465 (change=46.68829145146502 %)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,860 | INFO     | sum of square deviations: 2996473128.1220555
[2025-05-17 20:02:41] 2025-05-18 00:02:22,862 | INFO     | sum of deviations: -1526630563.8826218
[2025-05-17 20:02:41] 2025-05-18 00:02:22,862 | INFO     | mean x: 1747519996.0938966
[2025-05-17 20:02:41] 2025-05-18 00:02:22,862 | INFO     | mean y: 2229289.244131455
[2025-05-17 20:02:41] 2025-05-18 00:02:22,862 | INFO     | -- intersect: 892548448.7905253
[2025-05-17 20:02:41] 2025-05-18 00:02:22,862 | INFO     | intersect: 892548448.7905253
[2025-05-17 20:02:41] 2025-05-18 00:02:22,863 | INFO     | chi2: 2.122448375296008
[2025-05-17 20:02:41] 2025-05-18 00:02:22,863 | INFO     | current chi2=2.122448375296008 (change=37.694535832714045 %)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,863 | INFO     | sum of square deviations: 2790360838.0769334
[2025-05-17 20:02:41] 2025-05-18 00:02:22,864 | INFO     | sum of deviations: -32156343172.076916
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | mean x: 1747520148.5961537
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | mean y: 2251908.653846154
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | -- intersect: 20140814933.034794
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | intersect: 20140814933.034794
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | chi2: 1.1309736320365968
[2025-05-17 20:02:41] 2025-05-18 00:02:22,865 | INFO     | current chi2=1.1309736320365968 (change=46.71372716526661 %)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,866 | INFO     | sum of square deviations: 2593923148.0295715
[2025-05-17 20:02:41] 2025-05-18 00:02:22,867 | INFO     | sum of deviations: -37059148425.00493
[2025-05-17 20:02:41] 2025-05-18 00:02:22,867 | INFO     | mean x: 1747520301.0985222
[2025-05-17 20:02:41] 2025-05-18 00:02:22,867 | INFO     | mean y: 2255640.6502463054
[2025-05-17 20:02:41] 2025-05-18 00:02:22,867 | INFO     | -- intersect: 24968922160.170868
[2025-05-17 20:02:41] 2025-05-18 00:02:22,867 | INFO     | intersect: 24968922160.170868
[2025-05-17 20:02:41] 2025-05-18 00:02:22,868 | INFO     | chi2: 1.0248406014340052
[2025-05-17 20:02:41] 2025-05-18 00:02:22,868 | INFO     | current chi2=1.0248406014340052 (change=9.384217951348072 %)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,868 | INFO     | left removable region: 40
[2025-05-17 20:02:41] 2025-05-18 00:02:22,868 | INFO     | sum of square deviations: 1719455937.3672261
[2025-05-17 20:02:41] 2025-05-18 00:02:22,869 | INFO     | sum of deviations: -9957832176.367235
[2025-05-17 20:02:41] 2025-05-18 00:02:22,869 | INFO     | mean x: 1747520728.0960453
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | mean y: 2253145.903954802
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | -- intersect: 10122616079.860916
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | intersect: 10122616079.860916
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | chi2: 0.12738284932923696
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | -- intersect: 10122616079.860916
[2025-05-17 20:02:41] 2025-05-18 00:02:22,870 | INFO     | current memory leak: -5.79 B/s (using 177 data points, chi2=0.13)
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | ..............................
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | . Timing measurements:
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | . get job = 0 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | . initial setup = 2 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | . payload setup = 22 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,871 | INFO     | . stage-in = 0 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,872 | INFO     | . payload execution = 13602 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,872 | INFO     | . stage-out = 4 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,872 | INFO     | . log creation = 0 s
[2025-05-17 20:02:41] 2025-05-18 00:02:22,872 | INFO     | ..............................
[2025-05-17 20:02:41] 2025-05-18 00:02:23,025 | INFO     | 
[2025-05-17 20:02:41] 2025-05-18 00:02:23,025 | INFO     | job summary report
[2025-05-17 20:02:41] 2025-05-18 00:02:23,025 | INFO     | --------------------------------------------------
[2025-05-17 20:02:41] 2025-05-18 00:02:23,025 | INFO     | PanDA job id: 6653400151
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | task id: 44638099
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | errors: (none)
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | pilot state: finished 
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | transexitcode: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | exeerrorcode: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | exeerrordiag: 
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | exitcode: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | exitmsg: OK
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | cpuconsumptiontime: 55026 s
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | nevents: 400
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | neventsw: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | pid: 2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | pgrp: 2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:23,026 | INFO     | corecount: 9
[2025-05-17 20:02:41] 2025-05-18 00:02:23,027 | INFO     | event service: False
[2025-05-17 20:02:41] 2025-05-18 00:02:23,027 | INFO     | sizes: {0: 2393491, 1: 2393690, 12: 2393690, 19: 2393924, 23: 2393952, 13629: 2423886, 13634: 2432827, 13635: 2432883, 13667: 2433053}
[2025-05-17 20:02:41] 2025-05-18 00:02:23,027 | INFO     | --------------------------------------------------
[2025-05-17 20:02:41] 2025-05-18 00:02:23,027 | INFO     | 
[2025-05-17 20:02:41] 2025-05-18 00:02:23,027 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-17 20:02:41] 2025-05-18 00:02:23,240 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,240 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | job 6653400151 has completed (purged errors)
[2025-05-17 20:02:41] 2025-05-18 00:02:23,242 | INFO     | overall cleanup function is called
[2025-05-17 20:02:41] 2025-05-18 00:02:24,260 | INFO     | --- collectZombieJob: --- 10, [2744619]
[2025-05-17 20:02:41] 2025-05-18 00:02:24,260 | INFO     | zombie collector waiting for pid 2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:24,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 20:02:41] 2025-05-18 00:02:24,260 | INFO     | collected zombie processes
[2025-05-17 20:02:41] 2025-05-18 00:02:24,260 | INFO     | will attempt to kill all subprocesses of pid=2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:25,115 | INFO     | process IDs to be killed: [2744619] (in reverse order)
[2025-05-17 20:02:41] 2025-05-18 00:02:25,616 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 20:02:41] 2025-05-18 00:02:25,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 20:02:41] 2025-05-18 00:02:25,659 | INFO     | did not find any defunct processes belonging to 2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:25,686 | INFO     | did not find any defunct processes belonging to 2744619
[2025-05-17 20:02:41] 2025-05-18 00:02:25,686 | INFO     | ready for new job
[2025-05-17 20:02:41] 2025-05-18 00:02:25,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 20:02:41] 2025-05-18 00:02:25,688 | INFO     | **************************************
[2025-05-17 20:02:41] 2025-05-18 00:02:25,689 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 20:02:41] 2025-05-18 00:02:25,689 | INFO     | **************************************
[2025-05-17 20:02:41] 2025-05-18 00:02:25,689 | INFO     | 
[2025-05-17 20:02:41] 2025-05-18 00:02:25,708 | INFO     | architecture information:
[2025-05-17 20:02:41] 2025-05-18 00:02:25,709 | INFO     | executing command: cat /etc/os-release
[2025-05-17 20:02:41] 2025-05-18 00:02:25,781 | INFO     | cat /etc/os-release:
[2025-05-17 20:02:41] NAME="CentOS Linux"
[2025-05-17 20:02:41] VERSION="7 (Core)"
[2025-05-17 20:02:41] ID="centos"
[2025-05-17 20:02:41] ID_LIKE="rhel fedora"
[2025-05-17 20:02:41] VERSION_ID="7"
[2025-05-17 20:02:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 20:02:41] ANSI_COLOR="0;31"
[2025-05-17 20:02:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 20:02:41] HOME_URL="https://www.centos.org/"
[2025-05-17 20:02:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 20:02:41] 
[2025-05-17 20:02:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 20:02:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 20:02:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 20:02:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 20:02:41] 
[2025-05-17 20:02:41] 2025-05-18 00:02:25,781 | INFO     | **************************************
[2025-05-17 20:02:41] 2025-05-18 00:02:26,290 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-17 20:02:41] 2025-05-18 00:02:26,323 | INFO     | sufficient remaining disk space (96534003712 B)
[2025-05-17 20:02:41] 2025-05-18 00:02:26,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 20:02:41] 2025-05-18 00:02:26,324 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 20:02:41] 2025-05-18 00:02:26,324 | INFO     | update_server=False
[2025-05-17 20:02:41] 2025-05-18 00:02:26,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 20:02:41] 2025-05-18 00:02:26,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 20:02:41] 2025-05-18 00:02:26,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 20:02:41] 2025-05-18 00:02:26,336 | INFO     | aborting loop
[2025-05-17 20:02:41] 2025-05-18 00:02:26,868 | INFO     | all data control threads have been joined
[2025-05-17 20:02:41] 2025-05-18 00:02:27,137 | INFO     | PID=2728377 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-17 20:02:41] 2025-05-18 00:02:27,137 | INFO     | .. there are 64 such processes running
[2025-05-17 20:02:41] 2025-05-18 00:02:27,137 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 20:02:41] 2025-05-18 00:02:27,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 20:02:41] 2025-05-18 00:02:27,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 20:02:41] 2025-05-18 00:02:27,211 | INFO     | all payload control threads have been joined
[2025-05-17 20:02:41] 2025-05-18 00:02:27,242 | INFO     | all job control threads have been joined
[2025-05-17 20:02:41] 2025-05-18 00:02:27,329 | INFO     | [job] retrieve thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,342 | INFO     | [job] job monitor thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,361 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,614 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,879 | INFO     | [data] control thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:27,958 | INFO     | [data] copytool_in thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 20:02:41] 2025-05-18 00:02:28,219 | INFO     | [payload] control thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,247 | INFO     | [job] control thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,277 | INFO     | [job] validate thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,332 | INFO     | [data] copytool_out thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,599 | INFO     | [payload] validate_post thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 20:02:41] 2025-05-18 00:02:28,745 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:28,763 | INFO     | [payload] failed_post thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:29,051 | INFO     | [job] queue monitor thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:32,671 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 20:02:41] 2025-05-18 00:02:34,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584725436224)>', '<ExcThread(monitor, started 140583926486784)>']
[2025-05-17 20:02:41] 2025-05-18 00:02:35,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 20:02:41] 2025-05-18 00:02:35,186 | INFO     | [monitor] control thread has ended
[2025-05-17 20:02:41] 2025-05-18 00:02:39,769 | INFO     | all workflow threads have been joined
[2025-05-17 20:02:41] 2025-05-18 00:02:39,769 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 20:02:41] 2025-05-18 00:02:39,769 | INFO     | traces error code: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:39,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 20:02:41] 2025-05-18 00:02:40,175 [wrapper] ==== pilot stdout END ====
[2025-05-17 20:02:41] 2025-05-18 00:02:40,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 20:02:41] 2025-05-18 00:02:40,227 [wrapper] pilotpid: 2728377
[2025-05-17 20:02:41] 2025-05-18 00:02:40,245 [wrapper] Pilot exit status: 0
[2025-05-17 20:02:41] 2025-05-18 00:02:40,402 [wrapper] pandaids: 6653400151 6653400151
[2025-05-17 20:02:41] 2025-05-18 00:02:40,871 [wrapper] cleanup supervisor_pilot  366073 2728378
[2025-05-17 20:02:41] 2025-05-18 00:02:40,911 [wrapper] Test setup, not cleaning
[2025-05-17 20:02:41] 2025-05-18 00:02:40,942 [wrapper] apfmon messages muted
[2025-05-17 20:02:41] 2025-05-18 00:02:41,000 [wrapper] ==== wrapper stdout END ====
[2025-05-17 20:02:41] 2025-05-18 00:02:41,025 [wrapper] ==== wrapper stderr END ====
[2025-05-17 20:02:41]  *** Error codes and diagnostics ***
[2025-05-17 20:02:41]     "exeErrorCode": 0,
[2025-05-17 20:02:41]     "exeErrorDiag": "",
[2025-05-17 20:02:41]     "pilotErrorCode": 0,
[2025-05-17 20:02:41]     "pilotErrorDiag": "",
[2025-05-17 20:02:41]  *** Listing of results directory ***
[2025-05-17 20:02:41] total 627780
[2025-05-17 20:02:41] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas    495897 May 17 07:06 pilot3.tar.gz
[2025-05-17 20:02:41] -rwx------. 1 boincer umatlas     37140 May 17 07:15 runpilot2-wrapper.sh
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas      5111 May 17 07:15 queuedata.json
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas       100 May 17 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 20:02:41] -rwxr-xr-x. 1 boincer umatlas      7986 May 17 15:37 run_atlas
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas       105 May 17 15:37 job.xml
[2025-05-17 20:02:41] -rw-r--r--. 3 boincer umatlas 221746803 May 17 15:37 EVNT.44638096._002205.pool.root.1
[2025-05-17 20:02:41] -rw-r--r--. 3 boincer umatlas 221746803 May 17 15:37 ATLAS.root_0
[2025-05-17 20:02:41] -rw-r--r--. 2 boincer umatlas     17569 May 17 15:37 start_atlas.sh
[2025-05-17 20:02:41] drwxrwx--x. 2 boincer umatlas      4096 May 17 15:37 shared
[2025-05-17 20:02:41] -rw-r--r--. 2 boincer umatlas    508877 May 17 15:37 input.tar.gz
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas         0 May 17 15:37 boinc_lockfile
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas      2539 May 17 16:13 pandaJob.out
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas       467 May 17 16:13 setup.sh.local
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas    994635 May 17 16:13 agis_schedconf.cvmfs.json
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas 192507609 May 17 20:00 HITS.44638099._054867.pool.root.1
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas       531 May 17 20:01 boinc_task_state.xml
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas      1046 May 17 20:01 memory_monitor_summary.json
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas   1596741 May 17 20:01 agis_ddmendpoints.agis.ALL.json
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas    401786 May 17 20:01 log.44638099._054867.job.log.tgz.1
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas        96 May 17 20:02 pilot_heartbeat.json
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas      7728 May 17 20:02 heartbeat.json
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas      6867 May 17 20:02 init_data.xml
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas      8192 May 17 20:02 boinc_mmap_file
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas        28 May 17 20:02 wrapper_checkpoint.txt
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas      4748 May 17 20:02 pilotlog.txt
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas   1097234 May 17 20:02 log.44638099._054867.job.log.1
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas       357 May 17 20:02 output.list
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas       620 May 17 20:02 runtime_log
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas   1515520 May 17 20:02 result.tar.gz
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas       780 May 17 20:02 zRXKDm7gUa7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6UKKDmYpJsWn.diag
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas     11504 May 17 20:02 runtime_log.err
[2025-05-17 20:02:41] -rw-r--r--. 1 boincer umatlas     20516 May 17 20:02 stderr.txt
[2025-05-17 20:02:41] HITS file was successfully produced:
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas 192507609 May 17 20:00 shared/HITS.pool.root.1
[2025-05-17 20:02:41]  *** Contents of shared directory: ***
[2025-05-17 20:02:41] total 406556
[2025-05-17 20:02:41] -rw-r--r--. 3 boincer umatlas 221746803 May 17 15:37 ATLAS.root_0
[2025-05-17 20:02:41] -rw-r--r--. 2 boincer umatlas     17569 May 17 15:37 start_atlas.sh
[2025-05-17 20:02:41] -rw-r--r--. 2 boincer umatlas    508877 May 17 15:37 input.tar.gz
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas 192507609 May 17 20:00 HITS.pool.root.1
[2025-05-17 20:02:41] -rw-------. 1 boincer umatlas   1515520 May 17 20:02 result.tar.gz
20:02:43 (2706001): run_atlas exited; CPU time 55878.555793
20:02:43 (2706001): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN