Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:57:19 (24882): wrapper (7.7.26015): starting
05:57:19 (24882): wrapper: running run_atlas (--nthreads 8)
[2025-05-18 05:57:19] Arguments: --nthreads 8
[2025-05-18 05:57:19] Threads: 8
[2025-05-18 05:57:19] Checking for CVMFS
[2025-05-18 05:57:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-18 05:57:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-18 05:57:20] Running cvmfs_config stat atlas.cern.ch
[2025-05-18 05:57:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-18 05:57:21] 2.11.2.0 22062 8398 81136 146123 1 59 13467200 25165825 4632 130560 0 6652665 99.883 6467085 959 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-18 05:57:21] CVMFS is ok
[2025-05-18 05:57:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-18 05:57:21] Checking for apptainer binary...
[2025-05-18 05:57:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-18 05:57:21] Running /usr/bin/apptainer --version
[2025-05-18 05:57:21] apptainer version 1.3.2-1.el7
[2025-05-18 05:57:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-18 06:11:49] cg-vwn481.simple-grid.lan
[2025-05-18 06:11:49] apptainer works
[2025-05-18 06:11:49] Set ATHENA_PROC_NUMBER=8
[2025-05-18 06:11:49] Set ATHENA_CORE_NUMBER=8
[2025-05-18 06:11:49] Starting ATLAS job with PandaID=6651348345
[2025-05-18 06:11:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-18 13:35:02]  *** The last 200 lines of the pilot log: ***
[2025-05-18 13:35:02] 2025-05-18 09:12:00,311 | INFO     | -- intersect: -15248883957.591312
[2025-05-18 13:35:02] 2025-05-18 09:12:00,311 | INFO     | intersect: -15248883957.591312
[2025-05-18 13:35:02] 2025-05-18 09:12:00,311 | INFO     | chi2: 5.578766501237523
[2025-05-18 13:35:02] 2025-05-18 09:12:00,312 | INFO     | sum of square deviations: 7028008982.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,314 | INFO     | sum of deviations: 82980139638.00003
[2025-05-18 13:35:02] 2025-05-18 09:12:00,314 | INFO     | mean x: 1747550506.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,314 | INFO     | mean y: 2493317.770318021
[2025-05-18 13:35:02] 2025-05-18 09:12:00,314 | INFO     | -- intersect: -20630944314.95603
[2025-05-18 13:35:02] 2025-05-18 09:12:00,314 | INFO     | intersect: -20630944314.95603
[2025-05-18 13:35:02] 2025-05-18 09:12:00,315 | INFO     | chi2: 4.83640104179191
[2025-05-18 13:35:02] 2025-05-18 09:12:00,315 | INFO     | current chi2=4.83640104179191 (change=13.306982095073106 %)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,315 | INFO     | right removable region: 282
[2025-05-18 13:35:02] 2025-05-18 09:12:00,316 | INFO     | sum of square deviations: 7028008982.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,318 | INFO     | sum of deviations: -10568671754.000034
[2025-05-18 13:35:02] 2025-05-18 09:12:00,318 | INFO     | mean x: 1747550811.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,319 | INFO     | mean y: 2516240.8409893992
[2025-05-18 13:35:02] 2025-05-18 09:12:00,319 | INFO     | -- intersect: 2630471176.897381
[2025-05-18 13:35:02] 2025-05-18 09:12:00,319 | INFO     | intersect: 2630471176.897381
[2025-05-18 13:35:02] 2025-05-18 09:12:00,319 | INFO     | chi2: 2.823585126623044
[2025-05-18 13:35:02] 2025-05-18 09:12:00,319 | INFO     | current chi2=2.823585126623044 (change=49.38692763002905 %)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,320 | INFO     | sum of square deviations: 6662039329.5
[2025-05-18 13:35:02] 2025-05-18 09:12:00,322 | INFO     | sum of deviations: -66768678377.99999
[2025-05-18 13:35:02] 2025-05-18 09:12:00,323 | INFO     | mean x: 1747550963.5
[2025-05-18 13:35:02] 2025-05-18 09:12:00,323 | INFO     | mean y: 2539660.287769784
[2025-05-18 13:35:02] 2025-05-18 09:12:00,323 | INFO     | -- intersect: 17516946654.917854
[2025-05-18 13:35:02] 2025-05-18 09:12:00,323 | INFO     | intersect: 17516946654.917854
[2025-05-18 13:35:02] 2025-05-18 09:12:00,323 | INFO     | chi2: 1.361966594470501
[2025-05-18 13:35:02] 2025-05-18 09:12:00,324 | INFO     | current chi2=1.361966594470501 (change=51.764634909400165 %)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,324 | INFO     | sum of square deviations: 6309000152.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,326 | INFO     | sum of deviations: -89476423576.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | mean x: 1747551116.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | mean y: 2549399.1794871795
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | -- intersect: 24786924119.21476
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | intersect: 24786924119.21476
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | chi2: 0.9514867116803093
[2025-05-18 13:35:02] 2025-05-18 09:12:00,327 | INFO     | current chi2=0.9514867116803093 (change=30.138762907747836 %)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,328 | INFO     | sum of square deviations: 5968658887.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,330 | INFO     | sum of deviations: -85051212065.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,330 | INFO     | mean x: 1747551268.5
[2025-05-18 13:35:02] 2025-05-18 09:12:00,330 | INFO     | mean y: 2547409.917910448
[2025-05-18 13:35:02] 2025-05-18 09:12:00,330 | INFO     | -- intersect: 24904515564.837746
[2025-05-18 13:35:02] 2025-05-18 09:12:00,330 | INFO     | intersect: 24904515564.837746
[2025-05-18 13:35:02] 2025-05-18 09:12:00,331 | INFO     | chi2: 0.9507220896845675
[2025-05-18 13:35:02] 2025-05-18 09:12:00,331 | INFO     | current chi2=0.9507220896845675 (change=0.08036076451256774 %)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,331 | INFO     | left removable region: 40
[2025-05-18 13:35:02] 2025-05-18 09:12:00,331 | INFO     | sum of square deviations: 4394577280.5
[2025-05-18 13:35:02] 2025-05-18 09:12:00,333 | INFO     | sum of deviations: -40219497647.0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | mean x: 1747551695.5
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | mean y: 2543590.5702479337
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | -- intersect: 15996266494.716387
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | intersect: 15996266494.716387
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | chi2: 0.14157492279204456
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | -- intersect: 15996266494.716387
[2025-05-18 13:35:02] 2025-05-18 09:12:00,334 | INFO     | current memory leak: -9.15 B/s (using 242 data points, chi2=0.14)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,335 | INFO     | ..............................
[2025-05-18 13:35:02] 2025-05-18 09:12:00,335 | INFO     | . Timing measurements:
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . get job = 0 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . initial setup = 11 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . payload setup = 13 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . stage-in = 0 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . payload execution = 17543 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . stage-out = 2 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | . log creation = 0 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,336 | INFO     | ..............................
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | 
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | job summary report
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | --------------------------------------------------
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | PanDA job id: 6651348345
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | task id: 44638099
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | errors: (none)
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-18 13:35:02] 2025-05-18 09:12:00,873 | INFO     | pilot state: finished 
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | transexitcode: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | exeerrorcode: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | exeerrordiag: 
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | exitcode: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | exitmsg: OK
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | cpuconsumptiontime: 65148 s
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | nevents: 400
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | neventsw: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | pid: 11894
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | pgrp: 11894
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | corecount: 8
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | event service: False
[2025-05-18 13:35:02] 2025-05-18 09:12:00,874 | INFO     | sizes: {0: 2393541, 1: 2393740, 12: 2393740, 23: 2393768, 33: 2393796, 44: 2393852, 55: 2394008, 65: 2394036, 76: 2394064, 87: 2394120, 91: 2394354, 98: 2394662, 1
[2025-05-18 13:35:02] 2025-05-18 09:12:00,875 | INFO     | --------------------------------------------------
[2025-05-18 13:35:02] 2025-05-18 09:12:00,875 | INFO     | 
[2025-05-18 13:35:02] 2025-05-18 09:12:00,875 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-18 13:35:02] 2025-05-18 09:12:01,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-18 13:35:02] 2025-05-18 09:12:01,484 | INFO     | job 6651348345 has completed (purged errors)
[2025-05-18 13:35:02] 2025-05-18 09:12:01,484 | INFO     | overall cleanup function is called
[2025-05-18 13:35:02] 2025-05-18 09:12:02,492 | INFO     | --- collectZombieJob: --- 10, [11894]
[2025-05-18 13:35:02] 2025-05-18 09:12:02,492 | INFO     | zombie collector waiting for pid 11894
[2025-05-18 13:35:02] 2025-05-18 09:12:02,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-18 13:35:02] 2025-05-18 09:12:02,492 | INFO     | collected zombie processes
[2025-05-18 13:35:02] 2025-05-18 09:12:02,492 | INFO     | will attempt to kill all subprocesses of pid=11894
[2025-05-18 13:35:02] 2025-05-18 09:12:02,614 | INFO     | process IDs to be killed: [11894] (in reverse order)
[2025-05-18 13:35:02] 2025-05-18 09:12:03,198 | WARNING  | found no corresponding commands to process id(s)
[2025-05-18 13:35:02] 2025-05-18 09:12:03,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-18 13:35:02] 2025-05-18 09:12:03,202 | INFO     | did not find any defunct processes belonging to 11894
[2025-05-18 13:35:02] 2025-05-18 09:12:03,208 | INFO     | did not find any defunct processes belonging to 11894
[2025-05-18 13:35:02] 2025-05-18 09:12:03,208 | INFO     | ready for new job
[2025-05-18 13:35:02] 2025-05-18 09:12:03,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-18 13:35:02] 2025-05-18 09:12:03,211 | INFO     | **************************************
[2025-05-18 13:35:02] 2025-05-18 09:12:03,211 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-18 13:35:02] 2025-05-18 09:12:03,211 | INFO     | **************************************
[2025-05-18 13:35:02] 2025-05-18 09:12:03,211 | INFO     | 
[2025-05-18 13:35:02] 2025-05-18 09:12:03,212 | INFO     | pilot is running in a VM
[2025-05-18 13:35:02] 2025-05-18 09:12:03,212 | INFO     | architecture information:
[2025-05-18 13:35:02] 2025-05-18 09:12:03,219 | INFO     | executing command: cat /etc/os-release
[2025-05-18 13:35:02] 2025-05-18 09:12:03,427 | INFO     | cat /etc/os-release:
[2025-05-18 13:35:02] NAME="CentOS Linux"
[2025-05-18 13:35:02] VERSION="7 (Core)"
[2025-05-18 13:35:02] ID="centos"
[2025-05-18 13:35:02] ID_LIKE="rhel fedora"
[2025-05-18 13:35:02] VERSION_ID="7"
[2025-05-18 13:35:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-18 13:35:02] ANSI_COLOR="0;31"
[2025-05-18 13:35:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-18 13:35:02] HOME_URL="https://www.centos.org/"
[2025-05-18 13:35:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-18 13:35:02] 
[2025-05-18 13:35:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-18 13:35:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-18 13:35:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-18 13:35:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-18 13:35:02] 
[2025-05-18 13:35:02] 2025-05-18 09:12:03,427 | INFO     | **************************************
[2025-05-18 13:35:02] 2025-05-18 09:12:03,931 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-05-18 13:35:02] 2025-05-18 09:12:04,068 | INFO     | sufficient remaining disk space (496489201664 B)
[2025-05-18 13:35:02] 2025-05-18 09:12:04,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-18 13:35:02] 2025-05-18 09:12:04,069 | INFO     | current server update state: UPDATING_FINAL
[2025-05-18 13:35:02] 2025-05-18 09:12:04,069 | INFO     | update_server=False
[2025-05-18 13:35:02] 2025-05-18 09:12:04,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-18 13:35:02] 2025-05-18 09:12:04,070 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-18 13:35:02] 2025-05-18 09:12:04,070 | INFO     | found 0 job(s) in 20 queues
[2025-05-18 13:35:02] 2025-05-18 09:12:04,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-18 13:35:02] 2025-05-18 09:12:04,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-18 13:35:02] 2025-05-18 09:12:04,072 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-18 13:35:02] 2025-05-18 09:12:04,217 | INFO     | all job control threads have been joined
[2025-05-18 13:35:02] 2025-05-18 09:12:04,307 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-18 13:35:02] 2025-05-18 09:12:04,307 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-18 13:35:02] 2025-05-18 09:12:04,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:35:02] 2025-05-18 09:12:04,307 | INFO     | will abort loop
[2025-05-18 13:35:02] 2025-05-18 09:12:04,732 | INFO     | all data control threads have been joined
[2025-05-18 13:35:02] 2025-05-18 09:12:04,854 | INFO     | all payload control threads have been joined
[2025-05-18 13:35:02] 2025-05-18 09:12:05,075 | INFO     | [job] retrieve thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,223 | INFO     | [job] control thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,225 | INFO     | [payload] validate_pre thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,313 | INFO     | [job] job monitor thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-18 13:35:02] 2025-05-18 09:12:05,476 | INFO     | [job] validate thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,584 | INFO     | [payload] validate_post thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,738 | INFO     | [data] control thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,856 | INFO     | [payload] execute_payloads thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,860 | INFO     | [payload] control thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,910 | INFO     | [payload] failed_post thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:05,985 | INFO     | [job] create_data_payload thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:06,015 | INFO     | [data] copytool_in thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:06,079 | INFO     | [data] copytool_out thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:06,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-18 13:35:02] 2025-05-18 09:12:06,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:06,478 | INFO     | [job] queue monitor thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:10,216 | INFO     | [data] queue_monitor thread has finished
[2025-05-18 13:35:02] 2025-05-18 09:12:11,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077746788160)>', '<ExcThread(monitor, started 140077296494336)>']
[2025-05-18 13:35:02] 2025-05-18 09:12:12,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-18 13:35:02] 2025-05-18 09:12:12,118 | INFO     | [monitor] control thread has ended
[2025-05-18 13:35:02] 2025-05-18 09:12:16,637 | INFO     | all workflow threads have been joined
[2025-05-18 13:35:02] 2025-05-18 09:12:16,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-18 13:35:02] 2025-05-18 09:12:16,637 | INFO     | traces error code: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:16,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-18 13:35:02] 2025-05-18 09:12:16,891 [wrapper] ==== pilot stdout END ====
[2025-05-18 13:35:02] 2025-05-18 09:12:16,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-18 13:35:02] 2025-05-18 09:12:16,910 [wrapper] pilotpid: 5332
[2025-05-18 13:35:02] 2025-05-18 09:12:16,920 [wrapper] Pilot exit status: 0
[2025-05-18 13:35:02] 2025-05-18 09:12:17,210 [wrapper] pandaids: 6651348345
[2025-05-18 13:35:02] 2025-05-18 09:12:17,640 [wrapper] cleanup supervisor_pilot   527 5333
[2025-05-18 13:35:02] 2025-05-18 09:12:17,724 [wrapper] Test setup, not cleaning
[2025-05-18 13:35:02] 2025-05-18 09:12:17,744 [wrapper] apfmon messages muted
[2025-05-18 13:35:02] 2025-05-18 09:12:17,809 [wrapper] ==== wrapper stdout END ====
[2025-05-18 13:35:02] 2025-05-18 09:12:17,865 [wrapper] ==== wrapper stderr END ====
[2025-05-18 13:35:02]  *** Error codes and diagnostics ***
[2025-05-18 13:35:02]     "exeErrorCode": 0,
[2025-05-18 13:35:02]     "exeErrorDiag": "",
[2025-05-18 13:35:02]     "pilotErrorCode": 0,
[2025-05-18 13:35:02]     "pilotErrorDiag": "",
[2025-05-18 13:35:02]  *** Listing of results directory ***
[2025-05-18 13:35:02] total 418816
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc    495897 May 16 09:35 pilot3.tar.gz
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc      5111 May 16 10:09 queuedata.json
[2025-05-18 13:35:02] -rwx------. 1 boinc boinc     37140 May 16 10:10 runpilot2-wrapper.sh
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc       100 May 18 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-18 13:35:02] -rwxr-xr-x. 1 boinc boinc      7986 May 18 05:57 run_atlas
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc       105 May 18 05:57 job.xml
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc 220868784 May 18 05:57 EVNT.44638096._000499.pool.root.1
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc    508881 May 18 05:57 input.tar.gz
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc      6373 May 18 05:57 init_data.xml
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc     17569 May 18 05:57 start_atlas.sh
[2025-05-18 13:35:02] drwxrwx--x. 2 boinc boinc        68 May 18 05:57 shared
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc         0 May 18 05:57 boinc_lockfile
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc      2539 May 18 06:11 pandaJob.out
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc       424 May 18 06:12 setup.sh.local
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc    994627 May 18 06:15 agis_schedconf.cvmfs.json
[2025-05-18 13:35:02] drwx------. 4 boinc boinc      4096 May 18 06:15 pilot3
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc 200296694 May 18 11:09 HITS.44638099._037059.pool.root.1
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc       531 May 18 11:09 boinc_task_state.xml
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc      1031 May 18 11:10 memory_monitor_summary.json
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc   1596741 May 18 11:10 agis_ddmendpoints.agis.ALL.json
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc    407956 May 18 11:10 log.44638099._037059.job.log.tgz.1
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc        95 May 18 11:11 pilot_heartbeat.json
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc      7705 May 18 11:12 heartbeat.json
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc      4726 May 18 11:12 pilotlog.txt
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc   1531012 May 18 11:12 log.44638099._037059.job.log.1
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc       357 May 18 11:12 output.list
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc       620 May 18 11:12 runtime_log
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc   1955840 May 18 11:12 result.tar.gz
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc     11031 May 18 11:12 runtime_log.err
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc       657 May 18 11:12 3wYNDmJK5Z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmnnIKDmP5HnSo.diag
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc      8192 May 18 13:35 boinc_mmap_file
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc        28 May 18 13:35 wrapper_checkpoint.txt
[2025-05-18 13:35:02] -rw-r--r--. 1 boinc boinc     20468 May 18 13:35 stderr.txt
[2025-05-18 13:35:02] HITS file was successfully produced:
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc 200296694 May 18 11:09 shared/HITS.pool.root.1
[2025-05-18 13:35:02]  *** Contents of shared directory: ***
[2025-05-18 13:35:02] total 413732
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc 220868784 May 18 05:57 ATLAS.root_0
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc    508881 May 18 05:57 input.tar.gz
[2025-05-18 13:35:02] -rw-r--r--. 2 boinc boinc     17569 May 18 05:57 start_atlas.sh
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc 200296694 May 18 11:09 HITS.pool.root.1
[2025-05-18 13:35:02] -rw-------. 1 boinc boinc   1955840 May 18 11:12 result.tar.gz
13:35:04 (24882): run_atlas exited; CPU time 65361.373768
13:35:04 (24882): called boinc_finish(0)

</stderr_txt>
]]>

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