Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:27:58 (3297582): wrapper (7.7.26015): starting
10:27:58 (3297582): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 10:27:58] Arguments: --nthreads 8
[2025-05-17 10:27:58] Threads: 8
[2025-05-17 10:27:58] Checking for CVMFS
[2025-05-17 10:27:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 10:27:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 10:27:59] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 10:28:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 10:28:00] 2.12.6.0 14765 6988 284760 146104 1 197 21864754 32935937 29813 16776704 1 77393983 99.705 57371419 19232 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 10:28:00] CVMFS is ok
[2025-05-17 10:28:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 10:28:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 10:28:00] Further information can be found at the LHC@home message board.
[2025-05-17 10:28:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 10:28:00] Checking for apptainer binary...
[2025-05-17 10:28:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 10:28:00] Running /usr/bin/apptainer --version
[2025-05-17 10:28:00] apptainer version 1.4.0-1.el9
[2025-05-17 10:28:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 10:28:00] c7-7-35.aglt2.org
[2025-05-17 10:28:00] apptainer works
[2025-05-17 10:28:00] Set ATHENA_PROC_NUMBER=8
[2025-05-17 10:28:00] Set ATHENA_CORE_NUMBER=8
[2025-05-17 10:28:00] Starting ATLAS job with PandaID=6653402931
[2025-05-17 10:28:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:20:05 (3297582): BOINC client no longer exists - exiting
11:20:05 (3297582): timer handler: client dead, exiting
11:20:47 (3708700): wrapper (7.7.26015): starting
11:20:47 (3708700): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 11:20:47] Arguments: --nthreads 8
[2025-05-17 11:20:47] Threads: 8
[2025-05-17 11:20:47] This job has been restarted, cleaning up previous attempt
[2025-05-17 11:20:47] Checking for CVMFS
[2025-05-17 11:20:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 11:20:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 11:20:47] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 11:20:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 11:20:47] 2.12.6.0 14765 7041 287400 146106 0 195 22022829 32935937 23515 16776704 1 77629307 99.706 57446880 19236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 11:20:47] CVMFS is ok
[2025-05-17 11:20:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 11:20:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 11:20:47] Further information can be found at the LHC@home message board.
[2025-05-17 11:20:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 11:20:47] Checking for apptainer binary...
[2025-05-17 11:20:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 11:20:47] Running /usr/bin/apptainer --version
[2025-05-17 11:20:47] apptainer version 1.4.0-1.el9
[2025-05-17 11:20:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 11:20:47] c7-7-35.aglt2.org
[2025-05-17 11:20:47] apptainer works
[2025-05-17 11:20:48] Set ATHENA_PROC_NUMBER=8
[2025-05-17 11:20:48] Set ATHENA_CORE_NUMBER=8
[2025-05-17 11:20:48] Starting ATLAS job with PandaID=6653402931
[2025-05-17 11:20:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 15:05:42]  *** The last 200 lines of the pilot log: ***
[2025-05-17 15:05:42] 2025-05-17 19:05:18,610 | INFO     | -- intersect: -60546632556.791405
[2025-05-17 15:05:42] 2025-05-17 19:05:18,610 | INFO     | intersect: -60546632556.791405
[2025-05-17 15:05:42] 2025-05-17 19:05:18,610 | INFO     | chi2: 5.877863077299141
[2025-05-17 15:05:42] 2025-05-17 19:05:18,611 | INFO     | sum of square deviations: 3081441259.302337
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | sum of deviations: 125422387749.86044
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | mean x: 1747501820.1627908
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | mean y: 2047088.0325581396
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | -- intersect: -71125659864.1576
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | intersect: -71125659864.1576
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | chi2: 5.08757612634187
[2025-05-17 15:05:42] 2025-05-17 19:05:18,612 | INFO     | current chi2=5.08757612634187 (change=13.44514053090882 %)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,613 | INFO     | right removable region: 214
[2025-05-17 15:05:42] 2025-05-17 19:05:18,613 | INFO     | sum of square deviations: 3081419909.302337
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | sum of deviations: 67576771660.27911
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | mean x: 1747502125.1627908
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | mean y: 2071980.134883721
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | -- intersect: -38321348898.493515
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | intersect: -38321348898.493515
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | chi2: 3.3218842232100387
[2025-05-17 15:05:42] 2025-05-17 19:05:18,614 | INFO     | current chi2=3.3218842232100387 (change=43.48483148511119 %)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,615 | INFO     | sum of square deviations: 2871368086.666684
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | sum of deviations: 31335368888.666683
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | mean x: 1747502277.6666667
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | mean y: 2098297.995238095
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | -- intersect: -19068472541.997093
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | intersect: -19068472541.997093
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | chi2: 1.9160196930166815
[2025-05-17 15:05:42] 2025-05-17 19:05:18,616 | INFO     | current chi2=1.9160196930166815 (change=42.321298267127055 %)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,617 | INFO     | sum of square deviations: 2671083889.024385
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | sum of deviations: 3636020866.487814
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | mean x: 1747502430.1707318
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | mean y: 2119287.2146341465
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | -- intersect: -2376673579.025045
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | intersect: -2376673579.025045
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | chi2: 0.9565236481687721
[2025-05-17 15:05:42] 2025-05-17 19:05:18,618 | INFO     | current chi2=0.9565236481687721 (change=50.0775669657773 %)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,619 | INFO     | sum of square deviations: 2480359762.5550056
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | sum of deviations: -3618883200.704999
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | mean x: 1747502582.665
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | mean y: 2125034.885
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | -- intersect: 2551758291.7479644
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | intersect: 2551758291.7479644
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | chi2: 0.8655537799104877
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | current chi2=0.8655537799104877 (change=9.510467245890135 %)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,620 | INFO     | left removable region: 40
[2025-05-17 15:05:42] 2025-05-17 19:05:18,621 | INFO     | sum of square deviations: 1633341416.9655113
[2025-05-17 15:05:42] 2025-05-17 19:05:18,621 | INFO     | sum of deviations: 3219876105.24138
[2025-05-17 15:05:42] 2025-05-17 19:05:18,621 | INFO     | mean x: 1747503009.6206896
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | mean y: 2141064.8218390807
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | -- intersect: -3442786692.5166426
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | intersect: -3442786692.5166426
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | chi2: 0.05273337031111692
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | -- intersect: -3442786692.5166426
[2025-05-17 15:05:42] 2025-05-17 19:05:18,622 | INFO     | current memory leak: 1.97 B/s (using 174 data points, chi2=0.05)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | ..............................
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . Timing measurements:
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . get job = 0 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . initial setup = 1 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . payload setup = 7 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . stage-in = 0 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . payload execution = 13404 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . stage-out = 3 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | . log creation = 0 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,623 | INFO     | ..............................
[2025-05-17 15:05:42] 2025-05-17 19:05:18,699 | INFO     | 
[2025-05-17 15:05:42] 2025-05-17 19:05:18,699 | INFO     | job summary report
[2025-05-17 15:05:42] 2025-05-17 19:05:18,699 | INFO     | --------------------------------------------------
[2025-05-17 15:05:42] 2025-05-17 19:05:18,699 | INFO     | PanDA job id: 6653402931
[2025-05-17 15:05:42] 2025-05-17 19:05:18,699 | INFO     | task id: 44638099
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | errors: (none)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | pilot state: finished 
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | transexitcode: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | exeerrorcode: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | exeerrordiag: 
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | exitcode: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | exitmsg: OK
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | cpuconsumptiontime: 40241 s
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | nevents: 400
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | neventsw: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | pid: 3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | pgrp: 3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | corecount: 8
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | event service: False
[2025-05-17 15:05:42] 2025-05-17 19:05:18,700 | INFO     | sizes: {0: 2393712, 6: 2393918, 11: 2393946, 13416: 2423871, 13421: 2432868, 13443: 2432982}
[2025-05-17 15:05:42] 2025-05-17 19:05:18,701 | INFO     | --------------------------------------------------
[2025-05-17 15:05:42] 2025-05-17 19:05:18,701 | INFO     | 
[2025-05-17 15:05:42] 2025-05-17 19:05:18,701 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-17 15:05:42] 2025-05-17 19:05:18,738 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | job 6653402931 has completed (purged errors)
[2025-05-17 15:05:42] 2025-05-17 19:05:18,740 | INFO     | overall cleanup function is called
[2025-05-17 15:05:42] 2025-05-17 19:05:19,761 | INFO     | --- collectZombieJob: --- 10, [3772078]
[2025-05-17 15:05:42] 2025-05-17 19:05:19,762 | INFO     | zombie collector waiting for pid 3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:19,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 15:05:42] 2025-05-17 19:05:19,762 | INFO     | collected zombie processes
[2025-05-17 15:05:42] 2025-05-17 19:05:19,762 | INFO     | will attempt to kill all subprocesses of pid=3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:20,872 | INFO     | process IDs to be killed: [3772078] (in reverse order)
[2025-05-17 15:05:42] 2025-05-17 19:05:21,206 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 15:05:42] 2025-05-17 19:05:21,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 15:05:42] 2025-05-17 19:05:21,267 | INFO     | did not find any defunct processes belonging to 3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:21,364 | INFO     | did not find any defunct processes belonging to 3772078
[2025-05-17 15:05:42] 2025-05-17 19:05:21,365 | INFO     | ready for new job
[2025-05-17 15:05:42] 2025-05-17 19:05:21,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 15:05:42] 2025-05-17 19:05:21,366 | INFO     | **************************************
[2025-05-17 15:05:42] 2025-05-17 19:05:21,374 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 15:05:42] 2025-05-17 19:05:21,375 | INFO     | **************************************
[2025-05-17 15:05:42] 2025-05-17 19:05:21,375 | INFO     | 
[2025-05-17 15:05:42] 2025-05-17 19:05:21,386 | INFO     | architecture information:
[2025-05-17 15:05:42] 2025-05-17 19:05:21,389 | INFO     | executing command: cat /etc/os-release
[2025-05-17 15:05:42] 2025-05-17 19:05:21,458 | INFO     | cat /etc/os-release:
[2025-05-17 15:05:42] NAME="CentOS Linux"
[2025-05-17 15:05:42] VERSION="7 (Core)"
[2025-05-17 15:05:42] ID="centos"
[2025-05-17 15:05:42] ID_LIKE="rhel fedora"
[2025-05-17 15:05:42] VERSION_ID="7"
[2025-05-17 15:05:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 15:05:42] ANSI_COLOR="0;31"
[2025-05-17 15:05:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 15:05:42] HOME_URL="https://www.centos.org/"
[2025-05-17 15:05:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 15:05:42] 
[2025-05-17 15:05:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 15:05:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 15:05:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 15:05:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 15:05:42] 
[2025-05-17 15:05:42] 2025-05-17 19:05:21,458 | INFO     | **************************************
[2025-05-17 15:05:42] 2025-05-17 19:05:21,624 | INFO     | PID=3732746 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-17 15:05:42] 2025-05-17 19:05:21,624 | INFO     | .. there are 58 such processes running
[2025-05-17 15:05:42] 2025-05-17 19:05:21,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-17 15:05:42] 2025-05-17 19:05:21,983 | INFO     | sufficient remaining disk space (74337746944 B)
[2025-05-17 15:05:42] 2025-05-17 19:05:21,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 15:05:42] 2025-05-17 19:05:21,983 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 15:05:42] 2025-05-17 19:05:21,983 | INFO     | update_server=False
[2025-05-17 15:05:42] 2025-05-17 19:05:21,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 15:05:42] 2025-05-17 19:05:21,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 15:05:42] 2025-05-17 19:05:21,984 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-17 15:05:42] 2025-05-17 19:05:21,984 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 15:05:42] 2025-05-17 19:05:21,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 15:05:42] 2025-05-17 19:05:21,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 15:05:42] 2025-05-17 19:05:21,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 15:05:42] 2025-05-17 19:05:21,986 | INFO     | aborting loop
[2025-05-17 15:05:42] 2025-05-17 19:05:22,151 | INFO     | all data control threads have been joined
[2025-05-17 15:05:42] 2025-05-17 19:05:22,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 15:05:42] 2025-05-17 19:05:22,830 | INFO     | all payload control threads have been joined
[2025-05-17 15:05:42] 2025-05-17 19:05:22,854 | INFO     | all job control threads have been joined
[2025-05-17 15:05:42] 2025-05-17 19:05:22,990 | INFO     | [job] retrieve thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:22,993 | INFO     | [job] job monitor thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,039 | INFO     | [payload] failed_post thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,101 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,157 | INFO     | [data] control thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,253 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,303 | INFO     | [job] validate thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,497 | INFO     | [data] copytool_in thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 15:05:42] 2025-05-17 19:05:23,836 | INFO     | [payload] control thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,860 | INFO     | [job] control thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:23,968 | INFO     | [payload] validate_post thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:24,270 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:24,703 | INFO     | [data] copytool_out thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:24,728 | INFO     | [job] queue monitor thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:25,993 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:32,344 | INFO     | job.realtimelogging is not enabled
[2025-05-17 15:05:42] 2025-05-17 19:05:33,349 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 15:05:42] 2025-05-17 19:05:35,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963610736448)>', '<ExcThread(monitor, started 139962800379648)>']
[2025-05-17 15:05:42] 2025-05-17 19:05:36,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 15:05:42] 2025-05-17 19:05:36,106 | INFO     | [monitor] control thread has ended
[2025-05-17 15:05:42] 2025-05-17 19:05:40,488 | INFO     | all workflow threads have been joined
[2025-05-17 15:05:42] 2025-05-17 19:05:40,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 15:05:42] 2025-05-17 19:05:40,489 | INFO     | traces error code: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:40,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 15:05:42] 2025-05-17 19:05:40,693 [wrapper] ==== pilot stdout END ====
[2025-05-17 15:05:42] 2025-05-17 19:05:40,757 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 15:05:42] 2025-05-17 19:05:40,798 [wrapper] pilotpid: 3732746
[2025-05-17 15:05:42] 2025-05-17 19:05:40,837 [wrapper] Pilot exit status: 0
[2025-05-17 15:05:42] 2025-05-17 19:05:40,947 [wrapper] pandaids: 6653402931 6653402931
[2025-05-17 15:05:42] 2025-05-17 19:05:41,540 [wrapper] cleanup supervisor_pilot 1582643 3732747
[2025-05-17 15:05:42] 2025-05-17 19:05:41,555 [wrapper] Test setup, not cleaning
[2025-05-17 15:05:42] 2025-05-17 19:05:41,586 [wrapper] apfmon messages muted
[2025-05-17 15:05:42] 2025-05-17 19:05:41,665 [wrapper] ==== wrapper stdout END ====
[2025-05-17 15:05:42] 2025-05-17 19:05:41,673 [wrapper] ==== wrapper stderr END ====
[2025-05-17 15:05:42]  *** Error codes and diagnostics ***
[2025-05-17 15:05:42]     "exeErrorCode": 0,
[2025-05-17 15:05:42]     "exeErrorDiag": "",
[2025-05-17 15:05:42]     "pilotErrorCode": 0,
[2025-05-17 15:05:42]     "pilotErrorDiag": "",
[2025-05-17 15:05:42]  *** Listing of results directory ***
[2025-05-17 15:05:42] total 626416
[2025-05-17 15:05:42] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas    495897 May 17 07:37 pilot3.tar.gz
[2025-05-17 15:05:42] -rwx------. 1 boincer umatlas     37140 May 17 07:46 runpilot2-wrapper.sh
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas      5111 May 17 07:46 queuedata.json
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas       100 May 17 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 15:05:42] -rwxr-xr-x. 1 boincer umatlas      7986 May 17 10:27 run_atlas
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas       105 May 17 10:27 job.xml
[2025-05-17 15:05:42] -rw-r--r--. 3 boincer umatlas 221230536 May 17 10:27 EVNT.44638096._002178.pool.root.1
[2025-05-17 15:05:42] -rw-r--r--. 3 boincer umatlas 221230536 May 17 10:27 ATLAS.root_0
[2025-05-17 15:05:42] -rw-r--r--. 2 boincer umatlas     17569 May 17 10:27 start_atlas.sh
[2025-05-17 15:05:42] drwxrwx--x. 2 boincer umatlas      4096 May 17 10:27 shared
[2025-05-17 15:05:42] -rw-r--r--. 2 boincer umatlas    508876 May 17 10:27 input.tar.gz
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas         0 May 17 10:27 boinc_lockfile
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas      2539 May 17 11:20 pandaJob.out
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas       467 May 17 11:20 setup.sh.local
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas    994619 May 17 11:20 agis_schedconf.cvmfs.json
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas      6933 May 17 15:00 init_data.xml
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas 192120545 May 17 15:04 HITS.44638099._055191.pool.root.1
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas       531 May 17 15:04 boinc_task_state.xml
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas      1045 May 17 15:04 memory_monitor_summary.json
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas   1596741 May 17 15:04 agis_ddmendpoints.agis.ALL.json
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas    387266 May 17 15:04 log.44638099._055191.job.log.tgz.1
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas        95 May 17 15:05 pilot_heartbeat.json
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas      7710 May 17 15:05 heartbeat.json
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas      8192 May 17 15:05 boinc_mmap_file
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas      4943 May 17 15:05 pilotlog.txt
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas        28 May 17 15:05 wrapper_checkpoint.txt
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas   1121657 May 17 15:05 log.44638099._055191.job.log.1
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas       357 May 17 15:05 output.list
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas       620 May 17 15:05 runtime_log
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas   1525760 May 17 15:05 result.tar.gz
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas     11499 May 17 15:05 runtime_log.err
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas       782 May 17 15:05 HbKLDmTBVa7n9Rq4apOajLDm4fhM0noT9bVof3QYDmHYKKDmPVb80m.diag
[2025-05-17 15:05:42] -rw-r--r--. 1 boincer umatlas     23235 May 17 15:05 stderr.txt
[2025-05-17 15:05:42] HITS file was successfully produced:
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas 192120545 May 17 15:04 shared/HITS.pool.root.1
[2025-05-17 15:05:42]  *** Contents of shared directory: ***
[2025-05-17 15:05:42] total 405688
[2025-05-17 15:05:42] -rw-r--r--. 3 boincer umatlas 221230536 May 17 10:27 ATLAS.root_0
[2025-05-17 15:05:42] -rw-r--r--. 2 boincer umatlas     17569 May 17 10:27 start_atlas.sh
[2025-05-17 15:05:42] -rw-r--r--. 2 boincer umatlas    508876 May 17 10:27 input.tar.gz
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas 192120545 May 17 15:04 HITS.pool.root.1
[2025-05-17 15:05:42] -rw-------. 1 boincer umatlas   1525760 May 17 15:05 result.tar.gz
15:05:43 (3708700): run_atlas exited; CPU time 40875.871776
15:05:43 (3708700): called boinc_finish(0)

</stderr_txt>
]]>

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