Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:41:08 (1720840): wrapper (7.7.26015): starting
07:41:08 (1720840): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 07:41:08] Arguments: --nthreads 8
[2025-05-17 07:41:08] Threads: 8
[2025-05-17 07:41:08] Checking for CVMFS
[2025-05-17 07:41:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 07:41:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 07:41:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 07:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 07:41:10] 2.12.6.0 11692 5374 203632 146100 2 513 34446604 40960000 41592 16776704 0 55004750 99.717 46588240 40641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 07:41:10] CVMFS is ok
[2025-05-17 07:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 07:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 07:41:10] Further information can be found at the LHC@home message board.
[2025-05-17 07:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 07:41:10] Checking for apptainer binary...
[2025-05-17 07:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 07:41:10] Running /usr/bin/apptainer --version
[2025-05-17 07:41:10] apptainer version 1.4.0-1.el9
[2025-05-17 07:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 07:41:10] c8-7-3.aglt2.org
[2025-05-17 07:41:10] apptainer works
[2025-05-17 07:41:10] Set ATHENA_PROC_NUMBER=8
[2025-05-17 07:41:10] Set ATHENA_CORE_NUMBER=8
[2025-05-17 07:41:10] Starting ATLAS job with PandaID=6653397566
[2025-05-17 07:41:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:40:14 (1720840): BOINC client no longer exists - exiting
08:40:14 (1720840): timer handler: client dead, exiting
08:41:08 (3052832): wrapper (7.7.26015): starting
08:41:08 (3052832): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 08:41:08] Arguments: --nthreads 8
[2025-05-17 08:41:08] Threads: 8
[2025-05-17 08:41:08] This job has been restarted, cleaning up previous attempt
[2025-05-17 08:41:08] Checking for CVMFS
[2025-05-17 08:41:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 08:41:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 08:41:08] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 08:41:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 08:41:08] 2.12.6.0 11692 5434 211944 146101 2 581 34547335 40960001 35843 16776704 0 56245554 99.723 46589922 40634 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 08:41:08] CVMFS is ok
[2025-05-17 08:41:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 08:41:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 08:41:08] Further information can be found at the LHC@home message board.
[2025-05-17 08:41:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 08:41:08] Checking for apptainer binary...
[2025-05-17 08:41:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 08:41:08] Running /usr/bin/apptainer --version
[2025-05-17 08:41:08] apptainer version 1.4.0-1.el9
[2025-05-17 08:41:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 08:41:08] c8-7-3.aglt2.org
[2025-05-17 08:41:08] apptainer works
[2025-05-17 08:41:08] Set ATHENA_PROC_NUMBER=8
[2025-05-17 08:41:08] Set ATHENA_CORE_NUMBER=8
[2025-05-17 08:41:08] Starting ATLAS job with PandaID=6653397566
[2025-05-17 08:41:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 11:33:10]  *** The last 200 lines of the pilot log: ***
[2025-05-17 11:33:10] 2025-05-17 15:32:47,574 | INFO     | mean y: 2063611.8988095238
[2025-05-17 11:33:10] 2025-05-17 15:32:47,574 | INFO     | -- intersect: -95136741385.22943
[2025-05-17 11:33:10] 2025-05-17 15:32:47,574 | INFO     | intersect: -95136741385.22943
[2025-05-17 11:33:10] 2025-05-17 15:32:47,574 | INFO     | chi2: 4.714233838558512
[2025-05-17 11:33:10] 2025-05-17 15:32:47,574 | INFO     | sum of square deviations: 1342904650.4294498
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | sum of deviations: 77002311225.01842
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | mean x: 1747490647.0981596
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | mean y: 2059956.0613496932
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | -- intersect: -100199260091.21815
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | intersect: -100199260091.21815
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | chi2: 4.710993843188263
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | current chi2=4.710993843188263 (change=0.0687279307985902 %)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | right removable region: 162
[2025-05-17 11:33:10] 2025-05-17 15:32:47,575 | INFO     | sum of square deviations: 1342904407.2269967
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | sum of deviations: 44228550199.74844
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | mean x: 1747490952.1042945
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | mean y: 2106374.073619632
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | -- intersect: -57551499737.28567
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | intersect: -57551499737.28567
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | chi2: 2.124390428304753
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | current chi2=2.124390428304753 (change=54.93667685872927 %)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,576 | INFO     | sum of square deviations: 1223073719.6708827
[2025-05-17 11:33:10] 2025-05-17 15:32:47,577 | INFO     | sum of deviations: 15872820114.658222
[2025-05-17 11:33:10] 2025-05-17 15:32:47,577 | INFO     | mean x: 1747491104.607595
[2025-05-17 11:33:10] 2025-05-17 15:32:47,577 | INFO     | mean y: 2142468.7848101268
[2025-05-17 11:33:10] 2025-05-17 15:32:47,577 | INFO     | -- intersect: -22676467584.96213
[2025-05-17 11:33:10] 2025-05-17 15:32:47,577 | INFO     | intersect: -22676467584.96213
[2025-05-17 11:33:10] 2025-05-17 15:32:47,581 | INFO     | chi2: 0.631726605900934
[2025-05-17 11:33:10] 2025-05-17 15:32:47,581 | INFO     | current chi2=0.631726605900934 (change=70.2631589050678 %)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | sum of square deviations: 1110592007.1111088
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | sum of deviations: 2171955719.888889
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | mean x: 1747491257.1111112
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | mean y: 2160784.359477124
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | -- intersect: -3415362128.677827
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | intersect: -3415362128.677827
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | chi2: 0.05470095868420092
[2025-05-17 11:33:10] 2025-05-17 15:32:47,582 | INFO     | current chi2=0.05470095868420092 (change=91.34103927660458 %)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | sum of square deviations: 1005235795.2702714
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | sum of deviations: 1919873922.9324322
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | mean x: 1747491409.608108
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | mean y: 2161131.222972973
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | -- intersect: -3335327648.6637564
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | intersect: -3335327648.6637564
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | chi2: 0.05334096262609847
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | current chi2=0.05334096262609847 (change=2.486238067515353 %)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | left removable region: 40
[2025-05-17 11:33:10] 2025-05-17 15:32:47,583 | INFO     | sum of square deviations: 563060976.6557356
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | sum of deviations: 3086526075.524591
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | mean x: 1747491836.6229508
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | mean y: 2156951.598360656
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | -- intersect: -9577052661.787575
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | intersect: -9577052661.787575
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | chi2: 0.043282015523055474
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | -- intersect: -9577052661.787575
[2025-05-17 11:33:10] 2025-05-17 15:32:47,584 | INFO     | current memory leak: 5.48 B/s (using 122 data points, chi2=0.04)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | ..............................
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . Timing measurements:
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . get job = 0 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . initial setup = 0 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . payload setup = 6 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . stage-in = 0 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . payload execution = 10245 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . stage-out = 3 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | . log creation = 0 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | ..............................
[2025-05-17 11:33:10] 2025-05-17 15:32:47,585 | INFO     | monitor loop #622: job 0:6653397566 is in state 'finished'
[2025-05-17 11:33:10] 2025-05-17 15:32:47,596 | WARNING  | exception caught: deque index out of range
[2025-05-17 11:33:10] 2025-05-17 15:32:47,708 | INFO     | 
[2025-05-17 11:33:10] 2025-05-17 15:32:47,708 | INFO     | job summary report
[2025-05-17 11:33:10] 2025-05-17 15:32:47,708 | INFO     | --------------------------------------------------
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | PanDA job id: 6653397566
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | task id: 44638099
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | errors: (none)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | pilot state: finished 
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | transexitcode: 0
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | exeerrorcode: 0
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | exeerrordiag: 
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | exitcode: 0
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | exitmsg: OK
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | cpuconsumptiontime: 29546 s
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | nevents: 400
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | neventsw: 0
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | pid: 3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | pgrp: 3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | corecount: 8
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | event service: False
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | sizes: {0: 2393713, 1: 2393713, 5: 2393947, 11: 2394003, 10256: 2422538, 10260: 2431479, 10262: 2431663, 10274: 2431833}
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | --------------------------------------------------
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | 
[2025-05-17 11:33:10] 2025-05-17 15:32:47,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-17 11:33:10] 2025-05-17 15:32:47,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 11:33:10] 2025-05-17 15:32:47,772 | INFO     | job 6653397566 has completed (purged errors)
[2025-05-17 11:33:10] 2025-05-17 15:32:47,772 | INFO     | overall cleanup function is called
[2025-05-17 11:33:10] 2025-05-17 15:32:48,780 | INFO     | --- collectZombieJob: --- 10, [3141564]
[2025-05-17 11:33:10] 2025-05-17 15:32:48,780 | INFO     | zombie collector waiting for pid 3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:48,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 11:33:10] 2025-05-17 15:32:48,781 | INFO     | collected zombie processes
[2025-05-17 11:33:10] 2025-05-17 15:32:48,781 | INFO     | will attempt to kill all subprocesses of pid=3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:50,058 | INFO     | process IDs to be killed: [3141564] (in reverse order)
[2025-05-17 11:33:10] 2025-05-17 15:32:50,260 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 11:33:10] 2025-05-17 15:32:50,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 11:33:10] 2025-05-17 15:32:50,360 | INFO     | did not find any defunct processes belonging to 3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:50,390 | INFO     | did not find any defunct processes belonging to 3141564
[2025-05-17 11:33:10] 2025-05-17 15:32:50,391 | INFO     | ready for new job
[2025-05-17 11:33:10] 2025-05-17 15:32:50,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 11:33:10] 2025-05-17 15:32:50,392 | INFO     | **************************************
[2025-05-17 11:33:10] 2025-05-17 15:32:50,392 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 11:33:10] 2025-05-17 15:32:50,392 | INFO     | **************************************
[2025-05-17 11:33:10] 2025-05-17 15:32:50,392 | INFO     | 
[2025-05-17 11:33:10] 2025-05-17 15:32:50,397 | INFO     | architecture information:
[2025-05-17 11:33:10] 2025-05-17 15:32:50,397 | INFO     | executing command: cat /etc/os-release
[2025-05-17 11:33:10] 2025-05-17 15:32:50,506 | INFO     | cat /etc/os-release:
[2025-05-17 11:33:10] NAME="CentOS Linux"
[2025-05-17 11:33:10] VERSION="7 (Core)"
[2025-05-17 11:33:10] ID="centos"
[2025-05-17 11:33:10] ID_LIKE="rhel fedora"
[2025-05-17 11:33:10] VERSION_ID="7"
[2025-05-17 11:33:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 11:33:10] ANSI_COLOR="0;31"
[2025-05-17 11:33:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 11:33:10] HOME_URL="https://www.centos.org/"
[2025-05-17 11:33:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 11:33:10] 
[2025-05-17 11:33:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 11:33:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 11:33:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 11:33:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 11:33:10] 
[2025-05-17 11:33:10] 2025-05-17 15:32:50,507 | INFO     | **************************************
[2025-05-17 11:33:10] 2025-05-17 15:32:51,031 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-17 11:33:10] 2025-05-17 15:32:51,146 | INFO     | sufficient remaining disk space (168625700864 B)
[2025-05-17 11:33:10] 2025-05-17 15:32:51,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 11:33:10] 2025-05-17 15:32:51,146 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 11:33:10] 2025-05-17 15:32:51,146 | INFO     | update_server=False
[2025-05-17 11:33:10] 2025-05-17 15:32:51,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 11:33:10] 2025-05-17 15:32:51,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:33:10] 2025-05-17 15:32:51,147 | INFO     | aborting loop
[2025-05-17 11:33:10] 2025-05-17 15:32:51,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 11:33:10] 2025-05-17 15:32:51,768 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 11:33:10] 2025-05-17 15:32:51,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 11:33:10] 2025-05-17 15:32:51,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 11:33:10] 2025-05-17 15:32:52,016 | INFO     | all job control threads have been joined
[2025-05-17 11:33:10] 2025-05-17 15:32:52,056 | INFO     | all data control threads have been joined
[2025-05-17 11:33:10] 2025-05-17 15:32:52,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 11:33:10] 2025-05-17 15:32:52,152 | INFO     | [job] retrieve thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:52,153 | INFO     | [job] job monitor thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:52,386 | INFO     | all payload control threads have been joined
[2025-05-17 11:33:10] 2025-05-17 15:32:52,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:33:10] 2025-05-17 15:32:52,786 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,021 | INFO     | [job] control thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,066 | INFO     | [data] control thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,121 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,351 | INFO     | [data] copytool_in thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,352 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,394 | INFO     | [payload] control thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,531 | INFO     | [payload] validate_post thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,551 | INFO     | [job] validate thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,590 | INFO     | [payload] failed_post thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:53,765 | INFO     | [job] queue monitor thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:54,125 | INFO     | [data] copytool_out thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:32:55,161 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:33:01,597 | INFO     | job.realtimelogging is not enabled
[2025-05-17 11:33:10] 2025-05-17 15:33:02,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 11:33:10] 2025-05-17 15:33:04,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140013660710720)>', '<ExcThread(monitor, started 140012997809920)>']
[2025-05-17 11:33:10] 2025-05-17 15:33:04,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 11:33:10] 2025-05-17 15:33:04,894 | INFO     | [monitor] control thread has ended
[2025-05-17 11:33:10] 2025-05-17 15:33:09,194 | INFO     | all workflow threads have been joined
[2025-05-17 11:33:10] 2025-05-17 15:33:09,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 11:33:10] 2025-05-17 15:33:09,195 | INFO     | traces error code: 0
[2025-05-17 11:33:10] 2025-05-17 15:33:09,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 11:33:10] 2025-05-17 15:33:09,508 [wrapper] ==== pilot stdout END ====
[2025-05-17 11:33:10] 2025-05-17 15:33:09,550 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 11:33:10] 2025-05-17 15:33:09,583 [wrapper] pilotpid: 3084588
[2025-05-17 11:33:10] 2025-05-17 15:33:09,625 [wrapper] Pilot exit status: 0
[2025-05-17 11:33:10] 2025-05-17 15:33:09,783 [wrapper] pandaids: 6653397566 6653397566
[2025-05-17 11:33:10] 2025-05-17 15:33:09,976 [wrapper] cleanup supervisor_pilot 1862013 3084590
[2025-05-17 11:33:10] 2025-05-17 15:33:09,979 [wrapper] Test setup, not cleaning
[2025-05-17 11:33:10] 2025-05-17 15:33:09,985 [wrapper] apfmon messages muted
[2025-05-17 11:33:10] 2025-05-17 15:33:10,005 [wrapper] ==== wrapper stdout END ====
[2025-05-17 11:33:10] 2025-05-17 15:33:10,008 [wrapper] ==== wrapper stderr END ====
[2025-05-17 11:33:10]  *** Error codes and diagnostics ***
[2025-05-17 11:33:10]     "exeErrorCode": 0,
[2025-05-17 11:33:10]     "exeErrorDiag": "",
[2025-05-17 11:33:10]     "pilotErrorCode": 0,
[2025-05-17 11:33:10]     "pilotErrorDiag": "",
[2025-05-17 11:33:10]  *** Listing of results directory ***
[2025-05-17 11:33:10] total 631608
[2025-05-17 11:33:10] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas    495897 May 17 04:55 pilot3.tar.gz
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas      5111 May 17 05:01 queuedata.json
[2025-05-17 11:33:10] -rwx------. 1 boincer umatlas     37140 May 17 05:02 runpilot2-wrapper.sh
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas       100 May 17 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 11:33:10] -rwxr-xr-x. 1 boincer umatlas      7986 May 17 07:41 run_atlas
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas       105 May 17 07:41 job.xml
[2025-05-17 11:33:10] -rw-r--r--. 3 boincer umatlas 220303497 May 17 07:41 EVNT.44638096._002129.pool.root.1
[2025-05-17 11:33:10] -rw-r--r--. 3 boincer umatlas 220303497 May 17 07:41 ATLAS.root_0
[2025-05-17 11:33:10] -rw-r--r--. 2 boincer umatlas     17569 May 17 07:41 start_atlas.sh
[2025-05-17 11:33:10] drwxrwx--x. 2 boincer umatlas      4096 May 17 07:41 shared
[2025-05-17 11:33:10] -rw-r--r--. 2 boincer umatlas    508881 May 17 07:41 input.tar.gz
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas         0 May 17 07:41 boinc_lockfile
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas      2540 May 17 08:41 pandaJob.out
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas       467 May 17 08:41 setup.sh.local
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas    994651 May 17 08:41 agis_schedconf.cvmfs.json
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas      7161 May 17 11:31 init_data.xml
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas 199890559 May 17 11:31 HITS.44638099._053249.pool.root.1
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas       530 May 17 11:32 boinc_task_state.xml
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas      1035 May 17 11:32 memory_monitor_summary.json
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas   1596741 May 17 11:32 agis_ddmendpoints.agis.ALL.json
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas    362005 May 17 11:32 log.44638099._053249.job.log.tgz.1
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas        95 May 17 11:32 pilot_heartbeat.json
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas      7691 May 17 11:32 heartbeat.json
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas      4426 May 17 11:33 pilotlog.txt
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas        28 May 17 11:33 wrapper_checkpoint.txt
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas      8192 May 17 11:33 boinc_mmap_file
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas    851058 May 17 11:33 log.44638099._053249.job.log.1
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas       357 May 17 11:33 output.list
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas       620 May 17 11:33 runtime_log
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas   1228800 May 17 11:33 result.tar.gz
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas     11494 May 17 11:33 runtime_log.err
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas       778 May 17 11:33 IVaLDmAcSa7n9Rq4apOajLDm4fhM0noT9bVof3QYDmCIKKDmPuQTim.diag
[2025-05-17 11:33:10] -rw-r--r--. 1 boincer umatlas     23112 May 17 11:33 stderr.txt
[2025-05-17 11:33:10] HITS file was successfully produced:
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas 199890559 May 17 11:31 shared/HITS.pool.root.1
[2025-05-17 11:33:10]  *** Contents of shared directory: ***
[2025-05-17 11:33:10] total 412076
[2025-05-17 11:33:10] -rw-r--r--. 3 boincer umatlas 220303497 May 17 07:41 ATLAS.root_0
[2025-05-17 11:33:10] -rw-r--r--. 2 boincer umatlas     17569 May 17 07:41 start_atlas.sh
[2025-05-17 11:33:10] -rw-r--r--. 2 boincer umatlas    508881 May 17 07:41 input.tar.gz
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas 199890559 May 17 11:31 HITS.pool.root.1
[2025-05-17 11:33:10] -rw-------. 1 boincer umatlas   1228800 May 17 11:33 result.tar.gz
11:33:11 (3052832): run_atlas exited; CPU time 29947.204822
11:33:11 (3052832): called boinc_finish(0)

</stderr_txt>
]]>

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