Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:46:23 (3080): wrapper (7.7.26015): starting
10:46:23 (3080): wrapper: running run_atlas (--nthreads 12)
[2025-05-17 10:46:23] Arguments: --nthreads 12
[2025-05-17 10:46:23] Threads: 12
[2025-05-17 10:46:23] Checking for CVMFS
[2025-05-17 10:46:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 10:46:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 10:46:23] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 10:46:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 10:46:24] 2.10.0.0 16031 4199 110136 146106 0 56 16397750 16777216 922 130560 1 12716136 99.997 1181155 691 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-05-17 10:46:24] CVMFS is ok
[2025-05-17 10:46:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 10:46:24] Checking for apptainer binary...
[2025-05-17 10:46:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 10:46:24] Running /usr/bin/apptainer --version
[2025-05-17 10:46:24] apptainer version 1.3.6-150600.4.9.1
[2025-05-17 10:46:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 10:46:24] boinc-runner
[2025-05-17 10:46:24] apptainer works
[2025-05-17 10:46:24] Set ATHENA_PROC_NUMBER=12
[2025-05-17 10:46:24] Set ATHENA_CORE_NUMBER=12
[2025-05-17 10:46:24] Starting ATLAS job with PandaID=6653392502
[2025-05-17 10:46:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 11:23:18]  *** The last 200 lines of the pilot log: ***
[2025-05-17 11:23:18]  is_tar=False
[2025-05-17 11:23:18]  lfn=log.44638099._050993.job.log.tgz.1
[2025-05-17 11:23:18]  mtime=0
[2025-05-17 11:23:18]  protocol_id=None
[2025-05-17 11:23:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-17 11:23:18]  replicas=None
[2025-05-17 11:23:18]  scope=mc23_13p6TeV
[2025-05-17 11:23:18]  status=None
[2025-05-17 11:23:18]  status_code=0
[2025-05-17 11:23:18]  storage_token=
[2025-05-17 11:23:18]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6653392502/log.44638099._050993.job.log.tgz.1
[2025-05-17 11:23:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/06/log.44638099._050993.job.log.tgz.1
[2025-05-17 11:23:18]  workdir=None
[2025-05-17 11:23:18] ]
[2025-05-17 11:23:18] 2025-05-17 16:22:53,934 | INFO     | transferring file log.44638099._050993.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6653392502/log.44638099._050993.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-05-17 11:23:18] 2025-05-17 16:22:53,934 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6653392502/log.44638099._050993.job.log.tgz.1 /var/lib/boinc/slots/0/log.44638099._050993.job
[2025-05-17 11:23:18] 2025-05-17 16:22:53,946 | INFO     | adding to output.list: log.44638099._050993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/06/log.44638099._050993.job.log.tg
[2025-05-17 11:23:18] 2025-05-17 16:22:53,946 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-17 11:23:18] 2025-05-17 16:22:53,947 | INFO     | summary of transferred files:
[2025-05-17 11:23:18] 2025-05-17 16:22:53,947 | INFO     |  -- lfn=log.44638099._050993.job.log.tgz.1, status_code=0, status=transferred
[2025-05-17 11:23:18] 2025-05-17 16:22:53,947 | INFO     | stage-out finished correctly
[2025-05-17 11:23:18] 2025-05-17 16:22:53,993 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-17 11:23:18] 2025-05-17 16:22:54,029 | INFO     | job 6653392502 has state=finished
[2025-05-17 11:23:18] 2025-05-17 16:22:54,029 | INFO     | preparing for final server update for job 6653392502 in state='finished'
[2025-05-17 11:23:18] 2025-05-17 16:22:54,030 | INFO     | this job has now completed (state=finished)
[2025-05-17 11:23:18] 2025-05-17 16:22:54,030 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-17 11:23:18] 2025-05-17 16:22:54,030 | INFO     | log transfer has been attempted: DONE
[2025-05-17 11:23:18] 2025-05-17 16:22:54,030 | INFO     | job 6653392502 has finished - writing final server update
[2025-05-17 11:23:18] 2025-05-17 16:22:54,030 | INFO     | total number of processed events: 400 (read)
[2025-05-17 11:23:18] 2025-05-17 16:22:54,031 | INFO     | executing command: lscpu
[2025-05-17 11:23:18] 2025-05-17 16:22:54,050 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-17 11:23:18] 2025-05-17 16:22:55,642 | WARNING  | process 13630 can no longer be monitored (due to stat problems) - aborting
[2025-05-17 11:23:18] 2025-05-17 16:22:55,642 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6653392502/memory_monitor_summary.json (trf name=prmon)
[2025-05-17 11:23:18] 2025-05-17 16:22:55,679 | INFO     | number of running child processes to parent process 13630: 1
[2025-05-17 11:23:18] 2025-05-17 16:22:55,680 | INFO     | maximum number of monitored processes: 6
[2025-05-17 11:23:18] 2025-05-17 16:22:58,182 | INFO     | monitor loop #172: job 0:6653392502 is in state 'finished'
[2025-05-17 11:23:18] 2025-05-17 16:22:58,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,600 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-17 11:23:18] 2025-05-17 16:22:58,600 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6653392502/memory_monitor_summary.json (trf name=prmon)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,600 | INFO     | extracted standard info from prmon json
[2025-05-17 11:23:18] 2025-05-17 16:22:58,601 | INFO     | extracted standard memory fields from prmon json
[2025-05-17 11:23:18] 2025-05-17 16:22:58,601 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-17 11:23:18] 2025-05-17 16:22:58,601 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-17 11:23:18] 2025-05-17 16:22:58,601 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | fitting pss+swap vs Time
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | sum of square deviations: 7553630.0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | sum of deviations: 1256564254.0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | mean x: 1747497976.0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | mean y: 2834552.620689655
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | -- intersect: -290697595648.34894
[2025-05-17 11:23:18] 2025-05-17 16:22:58,602 | INFO     | intersect: -290697595648.34894
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | chi2: 0.6406499383694384
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | -- intersect: -290697595648.34894
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | current memory leak: 166.35 B/s (using 29 data points, chi2=0.64)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | ..............................
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . Timing measurements:
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . get job = 0 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . initial setup = 3 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . payload setup = 9 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . stage-in = 0 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . payload execution = 2155 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . stage-out = 0 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,603 | INFO     | . log creation = 0 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,604 | INFO     | ..............................
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | 
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | job summary report
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | --------------------------------------------------
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | PanDA job id: 6653392502
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | task id: 44638099
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | errors: (none)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | pilot state: finished 
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | transexitcode: 0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | exeerrorcode: 0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | exeerrordiag: 
[2025-05-17 11:23:18] 2025-05-17 16:22:58,633 | INFO     | exitcode: 0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | exitmsg: OK
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | cpuconsumptiontime: 19743 s
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | nevents: 400
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | neventsw: 0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | pid: 13630
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | pgrp: 13630
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | corecount: 12
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | event service: False
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | sizes: {0: 2393542, 1: 2393741, 2: 2393947, 11: 2393975, 2168: 2419032, 2169: 2428157, 2173: 2428271}
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | --------------------------------------------------
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | 
[2025-05-17 11:23:18] 2025-05-17 16:22:58,634 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 11:23:18] 2025-05-17 16:22:58,645 | INFO     | job 6653392502 has completed (purged errors)
[2025-05-17 11:23:18] 2025-05-17 16:22:58,645 | INFO     | overall cleanup function is called
[2025-05-17 11:23:18] 2025-05-17 16:22:59,650 | INFO     | --- collectZombieJob: --- 10, [13630]
[2025-05-17 11:23:18] 2025-05-17 16:22:59,650 | INFO     | zombie collector waiting for pid 13630
[2025-05-17 11:23:18] 2025-05-17 16:22:59,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 11:23:18] 2025-05-17 16:22:59,650 | INFO     | collected zombie processes
[2025-05-17 11:23:18] 2025-05-17 16:22:59,650 | INFO     | will attempt to kill all subprocesses of pid=13630
[2025-05-17 11:23:18] 2025-05-17 16:22:59,692 | INFO     | process IDs to be killed: [13630] (in reverse order)
[2025-05-17 11:23:18] 2025-05-17 16:22:59,714 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 11:23:18] 2025-05-17 16:22:59,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 11:23:18] 2025-05-17 16:22:59,716 | INFO     | did not find any defunct processes belonging to 13630
[2025-05-17 11:23:18] 2025-05-17 16:22:59,718 | INFO     | did not find any defunct processes belonging to 13630
[2025-05-17 11:23:18] 2025-05-17 16:22:59,718 | INFO     | ready for new job
[2025-05-17 11:23:18] 2025-05-17 16:22:59,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 11:23:18] 2025-05-17 16:22:59,720 | INFO     | **************************************
[2025-05-17 11:23:18] 2025-05-17 16:22:59,720 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 11:23:18] 2025-05-17 16:22:59,720 | INFO     | **************************************
[2025-05-17 11:23:18] 2025-05-17 16:22:59,720 | INFO     | 
[2025-05-17 11:23:18] 2025-05-17 16:22:59,721 | INFO     | architecture information:
[2025-05-17 11:23:18] 2025-05-17 16:22:59,721 | INFO     | executing command: cat /etc/os-release
[2025-05-17 11:23:18] 2025-05-17 16:22:59,731 | INFO     | cat /etc/os-release:
[2025-05-17 11:23:18] NAME="CentOS Linux"
[2025-05-17 11:23:18] VERSION="7 (Core)"
[2025-05-17 11:23:18] ID="centos"
[2025-05-17 11:23:18] ID_LIKE="rhel fedora"
[2025-05-17 11:23:18] VERSION_ID="7"
[2025-05-17 11:23:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 11:23:18] ANSI_COLOR="0;31"
[2025-05-17 11:23:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 11:23:18] HOME_URL="https://www.centos.org/"
[2025-05-17 11:23:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 11:23:18] 
[2025-05-17 11:23:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 11:23:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 11:23:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 11:23:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 11:23:18] 
[2025-05-17 11:23:18] 2025-05-17 16:22:59,732 | INFO     | **************************************
[2025-05-17 11:23:18] 2025-05-17 16:23:00,234 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | INFO     | sufficient remaining disk space (3888595861504 B)
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | INFO     | update_server=False
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 11:23:18] 2025-05-17 16:23:00,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 11:23:18] 2025-05-17 16:23:00,247 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-17 11:23:18] 2025-05-17 16:23:00,247 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 11:23:18] 2025-05-17 16:23:00,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 11:23:18] 2025-05-17 16:23:00,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 11:23:18] 2025-05-17 16:23:00,334 | INFO     | all data control threads have been joined
[2025-05-17 11:23:18] 2025-05-17 16:23:00,685 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-17 11:23:18] 2025-05-17 16:23:00,685 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-17 11:23:18] 2025-05-17 16:23:00,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:23:18] 2025-05-17 16:23:00,685 | INFO     | will abort loop
[2025-05-17 11:23:18] 2025-05-17 16:23:00,907 | INFO     | all job control threads have been joined
[2025-05-17 11:23:18] 2025-05-17 16:23:01,250 | INFO     | [job] retrieve thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,250 | INFO     | [job] queue monitor thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,274 | INFO     | [data] copytool_in thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,338 | INFO     | [data] control thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,454 | INFO     | all payload control threads have been joined
[2025-05-17 11:23:18] 2025-05-17 16:23:01,690 | INFO     | [job] job monitor thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,722 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,902 | INFO     | [payload] failed_post thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:01,913 | INFO     | [job] control thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,249 | INFO     | [data] copytool_out thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,278 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,279 | INFO     | [job] validate thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,458 | INFO     | [payload] control thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,492 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:02,578 | INFO     | [payload] validate_post thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:04,252 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:10,789 | INFO     | job.realtimelogging is not enabled
[2025-05-17 11:23:18] 2025-05-17 16:23:11,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 11:23:18] 2025-05-17 16:23:12,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260435429184)>', '<ExcThread(monitor, started 140260153460480)>']
[2025-05-17 11:23:18] 2025-05-17 16:23:13,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 11:23:18] 2025-05-17 16:23:13,301 | INFO     | [monitor] control thread has ended
[2025-05-17 11:23:18] 2025-05-17 16:23:18,018 | INFO     | all workflow threads have been joined
[2025-05-17 11:23:18] 2025-05-17 16:23:18,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 11:23:18] 2025-05-17 16:23:18,018 | INFO     | traces error code: 0
[2025-05-17 11:23:18] 2025-05-17 16:23:18,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 11:23:18] 2025-05-17 16:23:18,081 [wrapper] ==== pilot stdout END ====
[2025-05-17 11:23:18] 2025-05-17 16:23:18,083 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 11:23:18] 2025-05-17 16:23:18,084 [wrapper] pilotpid: 6904
[2025-05-17 11:23:18] 2025-05-17 16:23:18,086 [wrapper] Pilot exit status: 0
[2025-05-17 11:23:18] 2025-05-17 16:23:18,093 [wrapper] pandaids: 6653392502
[2025-05-17 11:23:18] 2025-05-17 16:23:18,111 [wrapper] cleanup supervisor_pilot  8345 6905
[2025-05-17 11:23:18] 2025-05-17 16:23:18,113 [wrapper] Test setup, not cleaning
[2025-05-17 11:23:18] 2025-05-17 16:23:18,115 [wrapper] apfmon messages muted
[2025-05-17 11:23:18] 2025-05-17 16:23:18,116 [wrapper] ==== wrapper stdout END ====
[2025-05-17 11:23:18] 2025-05-17 16:23:18,118 [wrapper] ==== wrapper stderr END ====
[2025-05-17 11:23:18]  *** Error codes and diagnostics ***
[2025-05-17 11:23:18]     "exeErrorCode": 0,
[2025-05-17 11:23:18]     "exeErrorDiag": "",
[2025-05-17 11:23:18]     "pilotErrorCode": 0,
[2025-05-17 11:23:18]     "pilotErrorDiag": "",
[2025-05-17 11:23:18]  *** Listing of results directory ***
[2025-05-17 11:23:18] total 411432
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc    495897 May 17 00:37 pilot3.tar.gz
[2025-05-17 11:23:18] -rwx------ 1 boinc boinc     37140 May 17 00:56 runpilot2-wrapper.sh
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc      5111 May 17 00:56 queuedata.json
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc       100 May 17 10:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 11:23:18] -rwxr-xr-x 1 boinc boinc      7986 May 17 10:46 run_atlas
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc       105 May 17 10:46 job.xml
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc     17569 May 17 10:46 start_atlas.sh
[2025-05-17 11:23:18] drwxrwx--x 1 boinc boinc        76 May 17 10:46 shared
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc    508880 May 17 10:46 input.tar.gz
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc     10043 May 17 10:46 init_data.xml
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc 220833289 May 17 10:46 EVNT.44638096._002040.pool.root.1
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc         0 May 17 10:46 boinc_lockfile
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc      2540 May 17 10:46 pandaJob.out
[2025-05-17 11:23:18] -rw------- 1 boinc boinc       473 May 17 10:46 setup.sh.local
[2025-05-17 11:23:18] -rw------- 1 boinc boinc    994619 May 17 10:46 agis_schedconf.cvmfs.json
[2025-05-17 11:23:18] -rw------- 1 boinc boinc   1596741 May 17 10:46 agis_ddmendpoints.agis.ALL.json
[2025-05-17 11:23:18] drwx------ 1 boinc boinc       368 May 17 10:46 pilot3
[2025-05-17 11:23:18] -rw------- 1 boinc boinc 195457992 May 17 11:22 HITS.44638099._050993.pool.root.1
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc       530 May 17 11:22 boinc_task_state.xml
[2025-05-17 11:23:18] -rw------- 1 boinc boinc        95 May 17 11:22 pilot_heartbeat.json
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc      8192 May 17 11:22 boinc_mmap_file
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc        27 May 17 11:22 wrapper_checkpoint.txt
[2025-05-17 11:23:18] -rw------- 1 boinc boinc      1026 May 17 11:22 memory_monitor_summary.json
[2025-05-17 11:23:18] -rw------- 1 boinc boinc    341201 May 17 11:22 log.44638099._050993.job.log.tgz.1
[2025-05-17 11:23:18] -rw------- 1 boinc boinc      7686 May 17 11:22 heartbeat.json
[2025-05-17 11:23:18] -rw------- 1 boinc boinc      4736 May 17 11:23 pilotlog.txt
[2025-05-17 11:23:18] -rw------- 1 boinc boinc    249059 May 17 11:23 log.44638099._050993.job.log.1
[2025-05-17 11:23:18] -rw------- 1 boinc boinc       357 May 17 11:23 output.list
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc       620 May 17 11:23 runtime_log
[2025-05-17 11:23:18] -rw------- 1 boinc boinc    614400 May 17 11:23 result.tar.gz
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc     11478 May 17 11:23 runtime_log.err
[2025-05-17 11:23:18] -rw------- 1 boinc boinc       652 May 17 11:23 6VVNDmphPa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrqNKDmJ9v5pm.diag
[2025-05-17 11:23:18] -rw-r--r-- 1 boinc boinc     21145 May 17 11:23 stderr.txt
[2025-05-17 11:23:18] HITS file was successfully produced:
[2025-05-17 11:23:18] -rw------- 1 boinc boinc 195457992 May 17 11:22 shared/HITS.pool.root.1
[2025-05-17 11:23:18]  *** Contents of shared directory: ***
[2025-05-17 11:23:18] total 407660
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc     17569 May 17 10:46 start_atlas.sh
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc    508880 May 17 10:46 input.tar.gz
[2025-05-17 11:23:18] -rw-r--r-- 2 boinc boinc 220833289 May 17 10:46 ATLAS.root_0
[2025-05-17 11:23:18] -rw------- 1 boinc boinc 195457992 May 17 11:22 HITS.pool.root.1
[2025-05-17 11:23:18] -rw------- 1 boinc boinc    614400 May 17 11:23 result.tar.gz
11:23:19 (3080): run_atlas exited; CPU time 19752.025400
11:23:19 (3080): called boinc_finish(0)

</stderr_txt>
]]>

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