Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-17 13:02:33 (1340): Detected: vboxwrapper 26206
2025-05-17 13:02:33 (1340): Detected: BOINC client v7.16.11
2025-05-17 13:02:34 (1340): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-05-17 13:02:34 (1340): Successfully copied 'init_data.xml' to the shared directory.
2025-05-17 13:02:35 (1340): Create VM. (boinc_b71018395cf4c830, slot#6)
2025-05-17 13:02:35 (1340): Setting Memory Size for VM. (4700MB)
2025-05-17 13:02:36 (1340): Setting CPU Count for VM. (7)
2025-05-17 13:02:36 (1340): Setting Chipset Options for VM.
2025-05-17 13:02:36 (1340): Setting Graphics Controller Options for VM.
2025-05-17 13:02:36 (1340): Setting Boot Options for VM.
2025-05-17 13:02:37 (1340): Setting Network Configuration for NAT.
2025-05-17 13:02:37 (1340): Enabling VM Network Access.
2025-05-17 13:02:37 (1340): Disabling USB Support for VM.
2025-05-17 13:02:37 (1340): Disabling COM Port Support for VM.
2025-05-17 13:02:38 (1340): Disabling LPT Port Support for VM.
2025-05-17 13:02:38 (1340): Disabling Audio Support for VM.
2025-05-17 13:02:38 (1340): Disabling Clipboard Support for VM.
2025-05-17 13:02:38 (1340): Disabling Drag and Drop Support for VM.
2025-05-17 13:02:39 (1340): Adding storage controller(s) to VM.
2025-05-17 13:02:39 (1340): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-17 13:02:40 (1340): Adding VirtualBox Guest Additions to VM.
2025-05-17 13:02:40 (1340): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-17 13:02:41 (1340): forwarding host port 51496 to guest port 80
2025-05-17 13:02:41 (1340): Enabling remote desktop for VM.
2025-05-17 13:02:41 (1340): Required extension pack not installed, remote desktop not enabled.
2025-05-17 13:02:41 (1340): Enabling shared directory for VM.
2025-05-17 13:02:42 (1340): Starting VM using VBoxManage interface. (boinc_b71018395cf4c830, slot#6)
2025-05-17 13:02:45 (1340): Successfully started VM. (PID = '20096')
2025-05-17 13:02:45 (1340): Reporting VM Process ID to BOINC.
2025-05-17 13:02:45 (1340): Guest Log: BIOS: VirtualBox 6.1.12
2025-05-17 13:02:45 (1340): Guest Log: CPUID EDX: 0x178bfbff
2025-05-17 13:02:45 (1340): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-17 13:02:45 (1340): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-17 13:02:45 (1340): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-17 13:02:45 (1340): Detected: Web Application Enabled (http://localhost:51496)
2025-05-17 13:02:45 (1340): Preference change detected
2025-05-17 13:02:45 (1340): Setting CPU throttle for VM. (40%)
2025-05-17 13:02:45 (1340): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-17 13:02:47 (1340): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-17 13:02:47 (1340): Guest Log: BIOS: Booting from Hard Disk...
2025-05-17 13:02:52 (1340): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-17 13:02:52 (1340): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-17 13:02:52 (1340): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-17 13:03:11 (1340): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-17 13:03:11 (1340): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-17 13:03:24 (1340): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000140 main     Log opened 2025-05-17T13:03:21.992671000Z
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000221 main     OS Product: Linux
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000273 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000296 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000297 main     Process ID: 1346
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.000297 main     Package type: LINUX_64BITS_GENERIC
2025-05-17 13:03:24 (1340): Guest Log: 00:00:00.002218 main     5.2.32 r132073 started. Verbose level = 0
2025-05-17 13:03:24 (1340): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-17 13:03:24 (1340): Guest Log: [INFO] Mounting shared directory
2025-05-17 13:03:24 (1340): Guest Log: [INFO] Checking for init_data.xml
2025-05-17 13:03:29 (1340): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-17 13:03:29 (1340): Guest Log: [INFO] Detected branch: prod
2025-05-17 13:03:29 (1340): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-17 13:03:29 (1340): Guest Log: Copying input files
2025-05-17 13:03:32 (1340): Guest Log: Copied input files into RunAtlas.
2025-05-17 13:03:32 (1340): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-17 13:03:32 (1340): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-17 13:03:32 (1340): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-17 13:03:32 (1340): Guest Log: Further information can be found at the LHC@home message board.
2025-05-17 13:03:34 (1340): Guest Log: 00:00:10.004595 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 942 031 000ns (GuestNow=1 747 483 414 054 031 000 ns GuestLast=1 747 487 001 996 062 000 ns fSetTimeLastLoop=true )
2025-05-17 13:03:46 (1340): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-17 13:03:46 (1340): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-17 13:03:46 (1340): Guest Log: 2.6.3.0 1622 0 30192 146100 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-17 13:03:47 (1340): Guest Log: copied the webapp to /var/www
2025-05-17 13:03:47 (1340): Guest Log: ATHENA_PROC_NUMBER=7
2025-05-17 13:03:47 (1340): Guest Log: ATHENA_CORE_NUMBER=7
2025-05-17 13:03:48 (1340): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-17 13:03:48 (1340): Guest Log:  *** Starting ATLAS job. (PandaID=6653392495 taskID=44638099) ***
2025-05-17 13:09:30 (1340): Guest Log:  *** Job finished ***
2025-05-17 13:09:30 (1340): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:19,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:20,929 | INFO     | [job] queue monitor thread has finished
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:22,954 | INFO     | [data] queue_monitor thread has finished
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:23,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299117803328)>', '<ExcThread(monitor, started 140297849792256)>']
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:23,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:23,824 | INFO     | [monitor] control thread has ended
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,547 | INFO     | all workflow threads have been joined
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,548 | INFO     | end of generic workflow (traces error code: 0)
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,548 | INFO     | traces error code: 0
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,765 [wrapper] ==== pilot stdout END ====
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,770 [wrapper] ==== wrapper stdout RESUME ====
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,774 [wrapper] pilotpid: 5972
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,780 [wrapper] Pilot exit status: 0
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:28,915 [wrapper] pandaids: 6653392495
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:29,020 [wrapper] cleanup supervisor_pilot  5978 5973
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:29,027 [wrapper] Test setup, not cleaning
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:29,032 [wrapper] apfmon messages muted
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:29,037 [wrapper] ==== wrapper stdout END ====
2025-05-17 13:09:30 (1340): Guest Log: 2025-05-17 12:09:29,041 [wrapper] ==== wrapper stderr END ====
2025-05-17 13:09:30 (1340): Guest Log:  *** Error codes and diagnostics ***
2025-05-17 13:09:30 (1340): Guest Log:     "exeErrorCode": 65,
2025-05-17 13:09:30 (1340): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-05-17 13:09:30 (1340): Guest Log:     "pilotErrorCode": 1305,
2025-05-17 13:09:30 (1340): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-05-17 13:09:30 (1340): Guest Log:  *** Listing of results directory ***
2025-05-17 13:09:30 (1340): Guest Log: total 3892
2025-05-17 13:09:30 (1340): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May 17 05:37 pilot3.tar.gz
2025-05-17 13:09:30 (1340): Guest Log: -rwx------. 1 atlas atlas   37140 May 17 05:56 runpilot2-wrapper.sh
2025-05-17 13:09:30 (1340): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May 17 05:56 queuedata.json
2025-05-17 13:09:30 (1340): Guest Log: -rwxr-xr-x. 1 atlas atlas   12648 May 17 12:03 init_data.xml
2025-05-17 13:09:30 (1340): Guest Log: -rwxr-xr-x. 1 atlas atlas  508874 May 17 12:03 input.tar.gz
2025-05-17 13:09:30 (1340): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 May 17 12:03 start_atlas.sh
2025-05-17 13:09:30 (1340): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 17 12:03 EVNT.44638096._002040.pool.root.1 -> /data/./ATLAS.root_0
2025-05-17 13:09:30 (1340): Guest Log: -rw-r--r--. 1 atlas atlas    2540 May 17 12:03 pandaJob.out
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas     424 May 17 12:03 setup.sh.local
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas  994635 May 17 12:04 agis_schedconf.cvmfs.json
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas 1596741 May 17 12:04 agis_ddmendpoints.agis.ALL.json
2025-05-17 13:09:30 (1340): Guest Log: drwx------. 4 atlas atlas    4096 May 17 12:04 pilot3
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas     951 May 17 12:06 memory_monitor_summary.json
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas   20510 May 17 12:07 log.44638099._050986.job.log.tgz.1
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas      95 May 17 12:08 pilot_heartbeat.json
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas    8354 May 17 12:09 heartbeat.json
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas    4413 May 17 12:09 pilotlog.txt
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas   79357 May 17 12:09 log.44638099._050986.job.log.1
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas     188 May 17 12:09 output.list
2025-05-17 13:09:30 (1340): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 17 12:09 runtime_log
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas  122880 May 17 12:09 result.tar.gz
2025-05-17 13:09:30 (1340): Guest Log: -rw-------. 1 atlas atlas     637 May 17 12:09 yf3KDmphPa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlqNKDmtb6Awm.diag
2025-05-17 13:09:30 (1340): Guest Log: -rw-r--r--. 1 atlas atlas   10773 May 17 12:09 runtime_log.err
2025-05-17 13:09:30 (1340): Guest Log: Looking for outputfile HITS.44638099._050986.pool.root.1
2025-05-17 13:09:30 (1340): Guest Log: No HITS file was produced
2025-05-17 13:09:30 (1340): Guest Log: Successfully finished the ATLAS job!
2025-05-17 13:09:30 (1340): Guest Log: Copying the results back to the shared directory!
2025-05-17 13:09:30 (1340): Guest Log:  *** Contents of shared directory: ***
2025-05-17 13:09:30 (1340): Guest Log: total 216316
2025-05-17 13:09:30 (1340): Guest Log: -rwxrwxrwx. 1 root root 220833289 May 17 12:02 ATLAS.root_0
2025-05-17 13:09:30 (1340): Guest Log: -rwxrwxrwx. 1 root root     12648 May 17 12:02 init_data.xml
2025-05-17 13:09:30 (1340): Guest Log: -rwxrwxrwx. 1 root root    508874 May 17 11:16 input.tar.gz
2025-05-17 13:09:30 (1340): Guest Log: -rwxrwxrwx. 1 root root    122880 May 17 12:09 result.tar.gz
2025-05-17 13:09:30 (1340): Guest Log: -rwxrwxrwx. 1 root root     17569 May 17 11:16 start_atlas.sh
2025-05-17 13:09:30 (1340): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-17 13:09:30 (1340): VM Completion File Detected.
2025-05-17 13:09:30 (1340): Powering off VM.
2025-05-17 13:09:30 (1340): Successfully stopped VM.
2025-05-17 13:09:30 (1340): Deregistering VM. (boinc_b71018395cf4c830, slot#6)
2025-05-17 13:09:30 (1340): Removing network bandwidth throttle group from VM.
2025-05-17 13:09:31 (1340): Removing VM from VirtualBox.
13:09:36 (1340): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN