Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:48:20 (3200843): wrapper (7.7.26015): starting
04:48:20 (3200843): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 04:48:20] Arguments: --nthreads 8
[2025-05-17 04:48:20] Threads: 8
[2025-05-17 04:48:20] Checking for CVMFS
[2025-05-17 04:48:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 04:48:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 04:48:20] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 04:48:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 04:48:20] 2.12.6.0 4867 11173 257572 146094 1 688 37450841 40960000 32429 16776704 0 92742427 99.694 86308869 23394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 04:48:20] CVMFS is ok
[2025-05-17 04:48:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 04:48:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 04:48:20] Further information can be found at the LHC@home message board.
[2025-05-17 04:48:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 04:48:20] Checking for apptainer binary...
[2025-05-17 04:48:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 04:48:20] Running /usr/bin/apptainer --version
[2025-05-17 04:48:20] apptainer version 1.4.0-1.el9
[2025-05-17 04:48:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 04:48:21] c7-3-35.aglt2.org
[2025-05-17 04:48:21] apptainer works
[2025-05-17 04:48:21] Set ATHENA_PROC_NUMBER=8
[2025-05-17 04:48:21] Set ATHENA_CORE_NUMBER=8
[2025-05-17 04:48:21] Starting ATLAS job with PandaID=6650200508
[2025-05-17 04:48:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:08 (3200843): BOINC client no longer exists - exiting
07:00:08 (3200843): timer handler: client dead, exiting
07:14:02 (259359): wrapper (7.7.26015): starting
07:14:02 (259359): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 07:14:02] Arguments: --nthreads 8
[2025-05-17 07:14:02] Threads: 8
[2025-05-17 07:14:02] This job has been restarted, cleaning up previous attempt
[2025-05-17 07:14:02] Checking for CVMFS
[2025-05-17 07:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 07:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 07:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 07:14:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 07:14:03] 2.12.6.0 4867 11319 244864 146099 0 85 37755228 40960001 27012 16776704 0 93523725 99.696 86383898 23392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 07:14:03] CVMFS is ok
[2025-05-17 07:14:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 07:14:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 07:14:03] Further information can be found at the LHC@home message board.
[2025-05-17 07:14:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 07:14:03] Checking for apptainer binary...
[2025-05-17 07:14:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 07:14:03] Running /usr/bin/apptainer --version
[2025-05-17 07:14:03] apptainer version 1.4.0-1.el9
[2025-05-17 07:14:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 07:14:03] c7-3-35.aglt2.org
[2025-05-17 07:14:03] apptainer works
[2025-05-17 07:14:03] Set ATHENA_PROC_NUMBER=8
[2025-05-17 07:14:03] Set ATHENA_CORE_NUMBER=8
[2025-05-17 07:14:03] Starting ATLAS job with PandaID=6650200508
[2025-05-17 07:14:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 14:17:56]  *** The last 200 lines of the pilot log: ***
[2025-05-17 14:17:56] 2025-05-17 14:11:21,693 | INFO     | intersect: -93939396765.53148
[2025-05-17 14:17:56] 2025-05-17 14:11:21,694 | INFO     | chi2: 6.105000380638808
[2025-05-17 14:17:56] 2025-05-17 14:11:21,694 | INFO     | sum of square deviations: 1470335251.3333335
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | sum of deviations: 95485116298.33336
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | mean x: 1747485580.6666667
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | mean y: 2050018.4166666667
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | -- intersect: -113481499905.52472
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | intersect: -113481499905.52472
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | chi2: 5.3401253304416265
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | current chi2=5.3401253304416265 (change=12.528665069749714 %)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,695 | INFO     | right removable region: 167
[2025-05-17 14:17:56] 2025-05-17 14:11:21,696 | INFO     | sum of square deviations: 1470337936.6428573
[2025-05-17 14:17:56] 2025-05-17 14:11:21,711 | INFO     | monitor loop #585: job 0:6650200508 is in state 'finished'
[2025-05-17 14:17:56] 2025-05-17 14:11:21,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,747 | INFO     | sum of deviations: 49170907805.03569
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | mean x: 1747485885.6785715
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | mean y: 2081709.482142857
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | -- intersect: -58437182648.677
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | intersect: -58437182648.677
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | chi2: 3.4639751657873052
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | current chi2=3.4639751657873052 (change=43.26003358209708 %)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,748 | INFO     | sum of square deviations: 1342921746.4785218
[2025-05-17 14:17:56] 2025-05-17 14:11:21,785 | INFO     | sum of deviations: 20316857584.74846
[2025-05-17 14:17:56] 2025-05-17 14:11:21,785 | INFO     | mean x: 1747486038.1840491
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | mean y: 2116266.4417177914
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | -- intersect: -26435332573.90995
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | intersect: -26435332573.90995
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | chi2: 1.9876786332102718
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | current chi2=1.9876786332102718 (change=42.61856572062044 %)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,786 | INFO     | sum of square deviations: 1223087093.8038044
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | sum of deviations: -1893220297.8354454
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | mean x: 1747486190.6898735
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | mean y: 2144384.2278481014
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | -- intersect: 2707083667.097844
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | intersect: 2707083667.097844
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | chi2: 1.0034674616640096
[2025-05-17 14:17:56] 2025-05-17 14:11:21,787 | INFO     | current chi2=1.0034674616640096 (change=49.51560856478478 %)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,788 | INFO     | sum of square deviations: 1110601416.117646
[2025-05-17 14:17:56] 2025-05-17 14:11:21,798 | INFO     | sum of deviations: -9987865214.235294
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | mean x: 1747486343.1960785
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | mean y: 2155246.274509804
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | -- intersect: 15717656601.002195
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | intersect: 15717656601.002195
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | chi2: 0.813451832888186
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | current chi2=0.813451832888186 (change=18.935903358612975 %)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | left removable region: 40
[2025-05-17 14:17:56] 2025-05-17 14:11:21,799 | INFO     | sum of square deviations: 635191564.8346472
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | sum of deviations: 776150194.3779523
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | mean x: 1747486770.1811023
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | mean y: 2170046.157480315
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | -- intersect: -2133110507.6736104
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | intersect: -2133110507.6736104
[2025-05-17 14:17:56] 2025-05-17 14:11:21,800 | INFO     | chi2: 0.04552780964725321
[2025-05-17 14:17:56] 2025-05-17 14:11:21,801 | INFO     | -- intersect: -2133110507.6736104
[2025-05-17 14:17:56] 2025-05-17 14:11:21,801 | INFO     | current memory leak: 1.22 B/s (using 127 data points, chi2=0.05)
[2025-05-17 14:17:56] 2025-05-17 14:11:21,834 | INFO     | ..............................
[2025-05-17 14:17:56] 2025-05-17 14:11:21,834 | INFO     | . Timing measurements:
[2025-05-17 14:17:56] 2025-05-17 14:11:21,834 | INFO     | . get job = 0 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . initial setup = 1 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . payload setup = 8 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . stage-in = 0 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . payload execution = 10556 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . stage-out = 6 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | . log creation = 0 s
[2025-05-17 14:17:56] 2025-05-17 14:11:21,835 | INFO     | ..............................
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | 
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | job summary report
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | --------------------------------------------------
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | PanDA job id: 6650200508
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | task id: 44638099
[2025-05-17 14:17:56] 2025-05-17 14:11:22,599 | INFO     | errors: (none)
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | pilot state: finished 
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | transexitcode: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | exeerrorcode: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | exeerrordiag: 
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | exitcode: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | exitmsg: OK
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | cpuconsumptiontime: 41147 s
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | nevents: 400
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | neventsw: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | pid: 315421
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | pgrp: 315421
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | corecount: 8
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | event service: False
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | sizes: {0: 2393711, 6: 2393917, 11: 2393945, 10572: 2422341, 10573: 2422340, 10581: 2431337, 10583: 2431521, 10612: 2431691}
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | --------------------------------------------------
[2025-05-17 14:17:56] 2025-05-17 14:11:22,600 | INFO     | 
[2025-05-17 14:17:56] 2025-05-17 14:11:22,601 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | job 6650200508 has completed (purged errors)
[2025-05-17 14:17:56] 2025-05-17 14:11:22,721 | INFO     | overall cleanup function is called
[2025-05-17 14:17:56] 2025-05-17 14:11:23,744 | INFO     | --- collectZombieJob: --- 10, [315421]
[2025-05-17 14:17:56] 2025-05-17 14:11:23,751 | INFO     | zombie collector waiting for pid 315421
[2025-05-17 14:17:56] 2025-05-17 14:11:23,751 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 14:17:56] 2025-05-17 14:11:23,751 | INFO     | collected zombie processes
[2025-05-17 14:17:56] 2025-05-17 14:11:23,751 | INFO     | will attempt to kill all subprocesses of pid=315421
[2025-05-17 14:17:56] 2025-05-17 14:11:26,236 | INFO     | PID=278036 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-17 14:17:56] 2025-05-17 14:11:26,237 | INFO     | .. there are 68 such processes running
[2025-05-17 14:17:56] 2025-05-17 14:11:28,628 | INFO     | process IDs to be killed: [315421] (in reverse order)
[2025-05-17 14:17:56] 2025-05-17 14:11:30,080 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 14:17:56] 2025-05-17 14:11:30,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 14:17:56] 2025-05-17 14:11:30,167 | INFO     | did not find any defunct processes belonging to 315421
[2025-05-17 14:17:56] 2025-05-17 14:11:30,256 | INFO     | did not find any defunct processes belonging to 315421
[2025-05-17 14:17:56] 2025-05-17 14:11:30,256 | INFO     | ready for new job
[2025-05-17 14:17:56] 2025-05-17 14:11:30,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 14:17:56] 2025-05-17 14:11:30,258 | INFO     | **************************************
[2025-05-17 14:17:56] 2025-05-17 14:11:30,258 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 14:17:56] 2025-05-17 14:11:30,258 | INFO     | **************************************
[2025-05-17 14:17:56] 2025-05-17 14:11:30,259 | INFO     | 
[2025-05-17 14:17:56] 2025-05-17 14:11:30,284 | INFO     | architecture information:
[2025-05-17 14:17:56] 2025-05-17 14:11:30,284 | INFO     | executing command: cat /etc/os-release
[2025-05-17 14:17:56] 2025-05-17 14:11:30,343 | INFO     | cat /etc/os-release:
[2025-05-17 14:17:56] NAME="CentOS Linux"
[2025-05-17 14:17:56] VERSION="7 (Core)"
[2025-05-17 14:17:56] ID="centos"
[2025-05-17 14:17:56] ID_LIKE="rhel fedora"
[2025-05-17 14:17:56] VERSION_ID="7"
[2025-05-17 14:17:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 14:17:56] ANSI_COLOR="0;31"
[2025-05-17 14:17:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 14:17:56] HOME_URL="https://www.centos.org/"
[2025-05-17 14:17:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 14:17:56] 
[2025-05-17 14:17:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 14:17:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 14:17:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 14:17:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 14:17:56] 
[2025-05-17 14:17:56] 2025-05-17 14:11:30,343 | INFO     | **************************************
[2025-05-17 14:17:56] 2025-05-17 14:11:30,847 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-17 14:17:56] 2025-05-17 14:11:30,945 | INFO     | sufficient remaining disk space (124193341440 B)
[2025-05-17 14:17:56] 2025-05-17 14:11:30,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 14:17:56] 2025-05-17 14:11:30,946 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 14:17:56] 2025-05-17 14:11:30,946 | INFO     | update_server=False
[2025-05-17 14:17:56] 2025-05-17 14:11:30,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 14:17:56] 2025-05-17 14:11:30,947 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-17 14:17:56] 2025-05-17 14:11:30,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:17:56] 2025-05-17 14:11:30,954 | INFO     | aborting loop
[2025-05-17 14:17:56] 2025-05-17 14:11:30,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 14:17:56] 2025-05-17 14:11:30,954 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 14:17:56] 2025-05-17 14:11:30,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 14:17:56] 2025-05-17 14:11:30,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 14:17:56] 2025-05-17 14:11:31,522 | INFO     | all data control threads have been joined
[2025-05-17 14:17:56] 2025-05-17 14:11:31,721 | INFO     | all payload control threads have been joined
[2025-05-17 14:17:56] 2025-05-17 14:11:31,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 14:17:56] 2025-05-17 14:11:31,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:17:56] 2025-05-17 14:11:31,952 | INFO     | [job] retrieve thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:31,960 | INFO     | [job] job monitor thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,530 | INFO     | [data] control thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,635 | INFO     | all job control threads have been joined
[2025-05-17 14:17:56] 2025-05-17 14:11:32,727 | INFO     | [payload] control thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,792 | INFO     | [job] queue monitor thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,809 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,958 | INFO     | [job] validate thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,962 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:32,962 | INFO     | [data] copytool_out thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,213 | INFO     | [payload] failed_post thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,214 | INFO     | [payload] validate_post thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,274 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,274 | INFO     | [data] copytool_in thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:33,641 | INFO     | [job] control thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:35,775 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 14:17:56] 2025-05-17 14:11:36,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768266585920)>', '<ExcThread(monitor, started 139767555548928)>']
[2025-05-17 14:17:56] 2025-05-17 14:11:36,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 14:17:56] 2025-05-17 14:11:36,988 | INFO     | [monitor] control thread has ended
[2025-05-17 14:17:56] 2025-05-17 14:11:41,121 | INFO     | all workflow threads have been joined
[2025-05-17 14:17:56] 2025-05-17 14:11:41,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 14:17:56] 2025-05-17 14:11:41,121 | INFO     | traces error code: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:41,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 14:17:56] 2025-05-17 14:11:42,375 [wrapper] ==== pilot stdout END ====
[2025-05-17 14:17:56] 2025-05-17 14:11:42,435 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 14:17:56] 2025-05-17 14:11:42,481 [wrapper] pilotpid: 278036
[2025-05-17 14:17:56] 2025-05-17 14:11:42,575 [wrapper] Pilot exit status: 0
[2025-05-17 14:17:56] 2025-05-17 14:11:42,669 [wrapper] pandaids: 6650200508 6650200508
[2025-05-17 14:17:56] 2025-05-17 14:11:42,852 [wrapper] cleanup supervisor_pilot 1948234 278037
[2025-05-17 14:17:56] 2025-05-17 14:11:42,866 [wrapper] Test setup, not cleaning
[2025-05-17 14:17:56] 2025-05-17 14:11:42,869 [wrapper] apfmon messages muted
[2025-05-17 14:17:56] 2025-05-17 14:11:42,872 [wrapper] ==== wrapper stdout END ====
[2025-05-17 14:17:56] 2025-05-17 14:11:42,906 [wrapper] ==== wrapper stderr END ====
[2025-05-17 14:17:56]  *** Error codes and diagnostics ***
[2025-05-17 14:17:56]     "exeErrorCode": 0,
[2025-05-17 14:17:56]     "exeErrorDiag": "",
[2025-05-17 14:17:56]     "pilotErrorCode": 0,
[2025-05-17 14:17:56]     "pilotErrorDiag": "",
[2025-05-17 14:17:56]  *** Listing of results directory ***
[2025-05-17 14:17:56] total 629332
[2025-05-17 14:17:56] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas    495897 May 15 03:49 pilot3.tar.gz
[2025-05-17 14:17:56] -rwx------. 1 boincer umatlas     37140 May 15 04:08 runpilot2-wrapper.sh
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas      5111 May 15 04:08 queuedata.json
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas       100 May 17 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 14:17:56] -rwxr-xr-x. 1 boincer umatlas      7986 May 17 04:48 run_atlas
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas       105 May 17 04:48 job.xml
[2025-05-17 14:17:56] -rw-r--r--. 3 boincer umatlas 220985312 May 17 04:48 EVNT.44638096._001405.pool.root.1
[2025-05-17 14:17:56] -rw-r--r--. 3 boincer umatlas 220985312 May 17 04:48 ATLAS.root_0
[2025-05-17 14:17:56] -rw-r--r--. 2 boincer umatlas    508875 May 17 04:48 input.tar.gz
[2025-05-17 14:17:56] -rw-r--r--. 2 boincer umatlas     17569 May 17 04:48 start_atlas.sh
[2025-05-17 14:17:56] drwxrwx--x. 2 boincer umatlas      4096 May 17 04:48 shared
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas         0 May 17 04:48 boinc_lockfile
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas      2539 May 17 07:14 pandaJob.out
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas       467 May 17 07:14 setup.sh.local
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas    994635 May 17 07:14 agis_schedconf.cvmfs.json
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas 196263553 May 17 10:08 HITS.44638099._020800.pool.root.1
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas       530 May 17 10:08 boinc_task_state.xml
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas      1044 May 17 10:10 memory_monitor_summary.json
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas        96 May 17 10:10 pilot_heartbeat.json
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas   1596741 May 17 10:10 agis_ddmendpoints.agis.ALL.json
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas    353297 May 17 10:10 log.44638099._020800.job.log.tgz.1
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas      7695 May 17 10:11 heartbeat.json
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas      4477 May 17 10:11 pilotlog.txt
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas    824239 May 17 10:11 log.44638099._020800.job.log.1
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas       357 May 17 10:11 output.list
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas       620 May 17 10:11 runtime_log
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas   1198080 May 17 10:11 result.tar.gz
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas       782 May 17 10:11 W8MLDm6oiZ7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSEHKDmGCXwyn.diag
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas     11499 May 17 10:11 runtime_log.err
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas      6934 May 17 14:09 init_data.xml
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas        28 May 17 14:17 wrapper_checkpoint.txt
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas      8192 May 17 14:17 boinc_mmap_file
[2025-05-17 14:17:56] -rw-r--r--. 1 boincer umatlas     23335 May 17 14:17 stderr.txt
[2025-05-17 14:17:56] HITS file was successfully produced:
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas 196263553 May 17 10:08 shared/HITS.pool.root.1
[2025-05-17 14:17:56]  *** Contents of shared directory: ***
[2025-05-17 14:17:56] total 409168
[2025-05-17 14:17:56] -rw-r--r--. 3 boincer umatlas 220985312 May 17 04:48 ATLAS.root_0
[2025-05-17 14:17:56] -rw-r--r--. 2 boincer umatlas    508875 May 17 04:48 input.tar.gz
[2025-05-17 14:17:56] -rw-r--r--. 2 boincer umatlas     17569 May 17 04:48 start_atlas.sh
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas 196263553 May 17 10:08 HITS.pool.root.1
[2025-05-17 14:17:56] -rw-------. 1 boincer umatlas   1198080 May 17 10:11 result.tar.gz
14:17:57 (259359): run_atlas exited; CPU time 41647.708165
14:17:57 (259359): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN