Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:27 (494008): wrapper (7.7.26015): starting
12:34:27 (494008): wrapper: running run_atlas (--nthreads 4)
[2025-05-17 12:34:27] Arguments: --nthreads 4
[2025-05-17 12:34:27] Threads: 4
[2025-05-17 12:34:27] Checking for CVMFS
[2025-05-17 12:34:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 12:34:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 12:34:27] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 12:34:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 12:34:28] 2.11.3.0 386057 538 57560 146108 2 56 3725193 4194304 0 130560 0 248180 99.979 222486 3155 http://s1unl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.59.5:3128 1
[2025-05-17 12:34:28] CVMFS is ok
[2025-05-17 12:34:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 12:34:28] Checking for apptainer binary...
[2025-05-17 12:34:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 12:34:28] Running /usr/bin/apptainer --version
[2025-05-17 12:34:28] apptainer version 1.4.0-1.fc42
[2025-05-17 12:34:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 12:34:28] R7OwensSE
[2025-05-17 12:34:28] apptainer works
[2025-05-17 12:34:28] Set ATHENA_PROC_NUMBER=4
[2025-05-17 12:34:28] Set ATHENA_CORE_NUMBER=4
[2025-05-17 12:34:28] Starting ATLAS job with PandaID=6653392843
[2025-05-17 12:34:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 14:15:18]  *** The last 200 lines of the pilot log: ***
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | sum of deviations: 5159115138.000001
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean x: 1747506321.5
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean y: 2375088.8
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | chi2: 1.6477700813695753
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | current memory leak: 22.83 B/s (using 90 data points, chi2=1.65)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . Timing measurements:
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . get job = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . initial setup = 2 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload setup = 5 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-in = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload execution = 5880 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-out = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . log creation = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | executing command: tail -n 20 /data/boinc/slots/2/PanDA_Pilot-6653392843/pilotlog.txt
[2025-05-17 14:15:18] 2025-05-17 19:15:05,204 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-17 14:15:18] - Log from pilotlog.txt -
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | sum of deviations: 5159115138.000001
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean x: 1747506321.5
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean y: 2375088.8
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | chi2: 1.6477700813695753
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | current memory leak: 22.83 B/s (using 90 data points, chi2=1.65)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . Timing measurements:
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . get job = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . initial setup = 2 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload setup = 5 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-in = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload execution = 5880 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-out = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . log creation = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | executing command: tail -n 20 /data/boinc/slots/2/PanDA_Pilot-6653392843/pilotlog.txt
[2025-05-17 14:15:18] 2025-05-17 19:15:05,205 | WARNING  | 
[2025-05-17 14:15:18] [begin log extracts]
[2025-05-17 14:15:18] - Log from pilotlog.txt -
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | sum of deviations: 5159115138.000001
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean x: 1747506321.5
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | mean y: 2375088.8
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | chi2: 1.6477700813695753
[2025-05-17 14:15:18] 2025-05-17 19:15:05,187 | INFO     | -- intersect: -39885568170.74619
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | current memory leak: 22.83 B/s (using 90 data points, chi2=1.65)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . Timing measurements:
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . get job = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . initial setup = 2 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload setup = 5 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-in = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . payload execution = 5880 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . stage-out = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,188 | INFO     | . log creation = 0 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | ..............................
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-17 14:15:18] 2025-05-17 19:15:05,189 | INFO     | executing command: tail -n 20 /data/boinc/slots/2/PanDA_Pilot-6653392843/pilotlog.txt
[2025-05-17 14:15:18] [end log extracts]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,205 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,205 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-05-17 14:15:18] 2025-05-17 19:15:05,385 | INFO     | 
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | job summary report
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | --------------------------------------------------
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | PanDA job id: 6653392843
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | task id: 44638099
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-17 19:12:54,600 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | pilot state: failed 
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | transexitcode: 65
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | exeerrorcode: 65
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | exitcode: 65
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | cpuconsumptiontime: 19775 s
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | nevents: 0
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | neventsw: 0
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | pid: 504277
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | pgrp: 504277
[2025-05-17 14:15:18] 2025-05-17 19:15:05,386 | INFO     | corecount: 4
[2025-05-17 14:15:18] 2025-05-17 19:15:05,387 | INFO     | event service: False
[2025-05-17 14:15:18] 2025-05-17 19:15:05,387 | INFO     | sizes: {0: 2393537, 1: 2393736, 4: 2393942, 11: 2393970, 5889: 2422993, 5890: 2427228, 5891: 2427412, 6012: 2427582}
[2025-05-17 14:15:18] 2025-05-17 19:15:05,387 | INFO     | --------------------------------------------------
[2025-05-17 14:15:18] 2025-05-17 19:15:05,387 | INFO     | 
[2025-05-17 14:15:18] 2025-05-17 19:15:05,387 | INFO     | executing command: ls -lF /data/boinc/slots/2
[2025-05-17 14:15:18] 2025-05-17 19:15:05,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 14:15:18] 2025-05-17 19:15:05,408 | INFO     | job 6653392843 has completed (purged errors)
[2025-05-17 14:15:18] 2025-05-17 19:15:05,408 | INFO     | overall cleanup function is called
[2025-05-17 14:15:18] 2025-05-17 19:15:06,413 | INFO     | --- collectZombieJob: --- 10, [504277]
[2025-05-17 14:15:18] 2025-05-17 19:15:06,414 | INFO     | zombie collector waiting for pid 504277
[2025-05-17 14:15:18] 2025-05-17 19:15:06,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 14:15:18] 2025-05-17 19:15:06,414 | INFO     | collected zombie processes
[2025-05-17 14:15:18] 2025-05-17 19:15:06,414 | INFO     | will attempt to kill all subprocesses of pid=504277
[2025-05-17 14:15:18] 2025-05-17 19:15:06,507 | INFO     | process IDs to be killed: [504277] (in reverse order)
[2025-05-17 14:15:18] 2025-05-17 19:15:06,568 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 14:15:18] 2025-05-17 19:15:06,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 14:15:18] 2025-05-17 19:15:06,571 | INFO     | did not find any defunct processes belonging to 504277
[2025-05-17 14:15:18] 2025-05-17 19:15:06,575 | INFO     | did not find any defunct processes belonging to 504277
[2025-05-17 14:15:18] 2025-05-17 19:15:06,575 | INFO     | ready for new job
[2025-05-17 14:15:18] 2025-05-17 19:15:06,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 14:15:18] 2025-05-17 19:15:06,576 | INFO     | **************************************
[2025-05-17 14:15:18] 2025-05-17 19:15:06,576 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 14:15:18] 2025-05-17 19:15:06,576 | INFO     | **************************************
[2025-05-17 14:15:18] 2025-05-17 19:15:06,577 | INFO     | 
[2025-05-17 14:15:18] 2025-05-17 19:15:06,578 | INFO     | architecture information:
[2025-05-17 14:15:18] 2025-05-17 19:15:06,578 | INFO     | executing command: cat /etc/os-release
[2025-05-17 14:15:18] 2025-05-17 19:15:06,595 | INFO     | cat /etc/os-release:
[2025-05-17 14:15:18] NAME="CentOS Linux"
[2025-05-17 14:15:18] VERSION="7 (Core)"
[2025-05-17 14:15:18] ID="centos"
[2025-05-17 14:15:18] ID_LIKE="rhel fedora"
[2025-05-17 14:15:18] VERSION_ID="7"
[2025-05-17 14:15:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 14:15:18] ANSI_COLOR="0;31"
[2025-05-17 14:15:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 14:15:18] HOME_URL="https://www.centos.org/"
[2025-05-17 14:15:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 14:15:18] 
[2025-05-17 14:15:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 14:15:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 14:15:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 14:15:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 14:15:18] 
[2025-05-17 14:15:18] 2025-05-17 19:15:06,596 | INFO     | **************************************
[2025-05-17 14:15:18] 2025-05-17 19:15:07,098 | INFO     | executing command: df -mP /data/boinc/slots/2
[2025-05-17 14:15:18] 2025-05-17 19:15:07,121 | INFO     | sufficient remaining disk space (404652818432 B)
[2025-05-17 14:15:18] 2025-05-17 19:15:07,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 14:15:18] 2025-05-17 19:15:07,121 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 14:15:18] 2025-05-17 19:15:07,121 | INFO     | update_server=False
[2025-05-17 14:15:18] 2025-05-17 19:15:07,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 14:15:18] 2025-05-17 19:15:07,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:15:18] 2025-05-17 19:15:07,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 14:15:18] 2025-05-17 19:15:07,581 | INFO     | all payload control threads have been joined
[2025-05-17 14:15:18] 2025-05-17 19:15:07,625 | INFO     | all job control threads have been joined
[2025-05-17 14:15:18] 2025-05-17 19:15:07,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:15:18] 2025-05-17 19:15:07,721 | INFO     | aborting loop
[2025-05-17 14:15:18] 2025-05-17 19:15:07,786 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 14:15:18] 2025-05-17 19:15:07,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 14:15:18] 2025-05-17 19:15:07,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 14:15:18] 2025-05-17 19:15:08,108 | INFO     | all data control threads have been joined
[2025-05-17 14:15:18] 2025-05-17 19:15:08,125 | INFO     | [job] queue monitor thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,126 | INFO     | [job] retrieve thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,290 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,347 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 14:15:18] 2025-05-17 19:15:08,426 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,437 | INFO     | [payload] failed_post thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,587 | INFO     | [payload] control thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,630 | INFO     | [job] control thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:08,722 | INFO     | [job] job monitor thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:09,093 | INFO     | [data] copytool_in thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:09,113 | INFO     | [payload] validate_post thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:09,113 | INFO     | [data] control thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:09,519 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:09,541 | INFO     | [job] validate thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:10,417 | INFO     | [data] copytool_out thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:11,128 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 14:15:18] 2025-05-17 19:15:13,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716596832064)>', '<ExcThread(monitor, started 139715881723648)>']
[2025-05-17 14:15:18] 2025-05-17 19:15:13,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 14:15:18] 2025-05-17 19:15:13,816 | INFO     | [monitor] control thread has ended
[2025-05-17 14:15:18] 2025-05-17 19:15:18,173 | INFO     | all workflow threads have been joined
[2025-05-17 14:15:18] 2025-05-17 19:15:18,174 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 14:15:18] 2025-05-17 19:15:18,174 | INFO     | traces error code: 0
[2025-05-17 14:15:18] 2025-05-17 19:15:18,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 14:15:18] 2025-05-17 19:15:18,292 [wrapper] ==== pilot stdout END ====
[2025-05-17 14:15:18] 2025-05-17 19:15:18,295 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 14:15:18] 2025-05-17 19:15:18,297 [wrapper] pilotpid: 497722
[2025-05-17 14:15:18] 2025-05-17 19:15:18,300 [wrapper] Pilot exit status: 0
[2025-05-17 14:15:18] 2025-05-17 19:15:18,312 [wrapper] pandaids: 6653392843
[2025-05-17 14:15:18] 2025-05-17 19:15:18,349 [wrapper] cleanup supervisor_pilot  517826 497723
[2025-05-17 14:15:18] 2025-05-17 19:15:18,352 [wrapper] Test setup, not cleaning
[2025-05-17 14:15:18] 2025-05-17 19:15:18,355 [wrapper] apfmon messages muted
[2025-05-17 14:15:18] 2025-05-17 19:15:18,358 [wrapper] ==== wrapper stdout END ====
[2025-05-17 14:15:18] 2025-05-17 19:15:18,360 [wrapper] ==== wrapper stderr END ====
[2025-05-17 14:15:18]  *** Error codes and diagnostics ***
[2025-05-17 14:15:18]     "exeErrorCode": 65,
[2025-05-17 14:15:18]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-05-17 14:15:18]     "pilotErrorCode": 1305,
[2025-05-17 14:15:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-05-17 14:15:18]  *** Listing of results directory ***
[2025-05-17 14:15:18] total 221620
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc    495897 May 17 00:37 pilot3.tar.gz
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc      5111 May 17 01:03 queuedata.json
[2025-05-17 14:15:18] -rwx------ 1 boinc boinc     37140 May 17 01:03 runpilot2-wrapper.sh
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc       100 May 17 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 14:15:18] -rwxr-xr-x 1 boinc boinc      7986 May 17 12:34 run_atlas
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc       105 May 17 12:34 job.xml
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc 221493126 May 17 12:34 EVNT.44638096._002045.pool.root.1
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc      9550 May 17 12:34 init_data.xml
[2025-05-17 14:15:18] drwxrwx--x 2 boinc boinc      4096 May 17 12:34 shared
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc    508875 May 17 12:34 input.tar.gz
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc     17569 May 17 12:34 start_atlas.sh
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc         0 May 17 12:34 boinc_lockfile
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc      2539 May 17 12:34 pandaJob.out
[2025-05-17 14:15:18] -rw------- 1 boinc boinc       424 May 17 12:34 setup.sh.local
[2025-05-17 14:15:18] -rw------- 1 boinc boinc    994635 May 17 12:34 agis_schedconf.cvmfs.json
[2025-05-17 14:15:18] -rw------- 1 boinc boinc   1596741 May 17 12:34 agis_ddmendpoints.agis.ALL.json
[2025-05-17 14:15:18] drwx------ 4 boinc boinc      4096 May 17 12:34 pilot3
[2025-05-17 14:15:18] -rw------- 1 boinc boinc      1015 May 17 14:12 memory_monitor_summary.json
[2025-05-17 14:15:18] -rw------- 1 boinc boinc    226661 May 17 14:13 log.44638099._051105.job.log.tgz.1
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc       529 May 17 14:13 boinc_task_state.xml
[2025-05-17 14:15:18] -rw------- 1 boinc boinc        95 May 17 14:14 pilot_heartbeat.json
[2025-05-17 14:15:18] -rw------- 1 boinc boinc      9788 May 17 14:15 heartbeat.json
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc      8192 May 17 14:15 boinc_mmap_file
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc        27 May 17 14:15 wrapper_checkpoint.txt
[2025-05-17 14:15:18] -rw------- 1 boinc boinc      4351 May 17 14:15 pilotlog.txt
[2025-05-17 14:15:18] -rw------- 1 boinc boinc    572838 May 17 14:15 log.44638099._051105.job.log.1
[2025-05-17 14:15:18] -rw------- 1 boinc boinc       188 May 17 14:15 output.list
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc       620 May 17 14:15 runtime_log
[2025-05-17 14:15:18] -rw------- 1 boinc boinc    819200 May 17 14:15 result.tar.gz
[2025-05-17 14:15:18] -rw------- 1 boinc boinc       644 May 17 14:15 z18LDm1oPa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3rNKDm7Da4om.diag
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc     10768 May 17 14:15 runtime_log.err
[2025-05-17 14:15:18] -rw-r--r-- 1 boinc boinc     21233 May 17 14:15 stderr.txt
[2025-05-17 14:15:18] No HITS result produced
[2025-05-17 14:15:18]  *** Contents of shared directory: ***
[2025-05-17 14:15:18] total 217628
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc 221493126 May 17 12:34 ATLAS.root_0
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc    508875 May 17 12:34 input.tar.gz
[2025-05-17 14:15:18] -rw-r--r-- 2 boinc boinc     17569 May 17 12:34 start_atlas.sh
[2025-05-17 14:15:18] -rw------- 1 boinc boinc    819200 May 17 14:15 result.tar.gz
14:15:20 (494008): run_atlas exited; CPU time 19820.400019
14:15:20 (494008): called boinc_finish(0)

</stderr_txt>
]]>

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