Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:18:21 (2650894): wrapper (7.7.26015): starting
04:18:21 (2650894): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 04:18:21] Arguments: --nthreads 8
[2025-05-17 04:18:21] Threads: 8
[2025-05-17 04:18:21] Checking for CVMFS
[2025-05-17 04:18:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 04:18:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 04:18:21] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 04:18:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 04:18:22] 2.12.6.0 4867 11143 254228 146094 3 624 37428232 40960001 34261 16776704 0 92193501 99.692 86308832 23394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 04:18:22] CVMFS is ok
[2025-05-17 04:18:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 04:18:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 04:18:22] Further information can be found at the LHC@home message board.
[2025-05-17 04:18:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 04:18:22] Checking for apptainer binary...
[2025-05-17 04:18:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 04:18:22] Running /usr/bin/apptainer --version
[2025-05-17 04:18:22] apptainer version 1.4.0-1.el9
[2025-05-17 04:18:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 04:18:22] c7-3-35.aglt2.org
[2025-05-17 04:18:22] apptainer works
[2025-05-17 04:18:22] Set ATHENA_PROC_NUMBER=8
[2025-05-17 04:18:22] Set ATHENA_CORE_NUMBER=8
[2025-05-17 04:18:22] Starting ATLAS job with PandaID=6653392423
[2025-05-17 04:18:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:07 (2650894): BOINC client no longer exists - exiting
07:00:07 (2650894): timer handler: client dead, exiting
07:14:02 (259347): wrapper (7.7.26015): starting
07:14:02 (259347): wrapper: running run_atlas (--nthreads 8)
[2025-05-17 07:14:02] Arguments: --nthreads 8
[2025-05-17 07:14:02] Threads: 8
[2025-05-17 07:14:02] This job has been restarted, cleaning up previous attempt
[2025-05-17 07:14:02] Checking for CVMFS
[2025-05-17 07:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 07:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 07:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 07:14:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 07:14:03] 2.12.6.0 4867 11319 244864 146099 0 85 37755228 40960001 27013 16776704 0 93523709 99.696 86383898 23392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-17 07:14:03] CVMFS is ok
[2025-05-17 07:14:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 07:14:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 07:14:03] Further information can be found at the LHC@home message board.
[2025-05-17 07:14:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 07:14:03] Checking for apptainer binary...
[2025-05-17 07:14:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 07:14:03] Running /usr/bin/apptainer --version
[2025-05-17 07:14:03] apptainer version 1.4.0-1.el9
[2025-05-17 07:14:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 07:14:03] c7-3-35.aglt2.org
[2025-05-17 07:14:03] apptainer works
[2025-05-17 07:14:03] Set ATHENA_PROC_NUMBER=8
[2025-05-17 07:14:03] Set ATHENA_CORE_NUMBER=8
[2025-05-17 07:14:03] Starting ATLAS job with PandaID=6653392423
[2025-05-17 07:14:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 14:17:28]  *** The last 200 lines of the pilot log: ***
[2025-05-17 14:17:28] 2025-05-17 18:16:56,390 | INFO     | mean y: 2050575.868292683
[2025-05-17 14:17:28] 2025-05-17 18:16:56,390 | INFO     | -- intersect: -18732519063.884724
[2025-05-17 14:17:28] 2025-05-17 18:16:56,390 | INFO     | intersect: -18732519063.884724
[2025-05-17 14:17:28] 2025-05-17 18:16:56,414 | INFO     | chi2: 5.290415007995002
[2025-05-17 14:17:28] 2025-05-17 18:16:56,415 | INFO     | current chi2=5.290415007995002 (change=0.4810886189280432 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,415 | INFO     | right removable region: 409
[2025-05-17 14:17:28] 2025-05-17 18:16:56,415 | INFO     | sum of square deviations: 21371239928.624416
[2025-05-17 14:17:28] 2025-05-17 18:16:56,443 | INFO     | sum of deviations: 138253174948.55618
[2025-05-17 14:17:28] 2025-05-17 18:16:56,443 | INFO     | mean x: 1747493266.8487804
[2025-05-17 14:17:28] 2025-05-17 18:16:56,443 | INFO     | mean y: 2067790.4121951219
[2025-05-17 14:17:28] 2025-05-17 18:16:56,443 | INFO     | -- intersect: -11302680701.016071
[2025-05-17 14:17:28] 2025-05-17 18:16:56,443 | INFO     | intersect: -11302680701.016071
[2025-05-17 14:17:28] 2025-05-17 18:16:56,444 | INFO     | chi2: 2.667066931710358
[2025-05-17 14:17:28] 2025-05-17 18:16:56,444 | INFO     | current chi2=2.667066931710358 (change=49.829342835456934 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,444 | INFO     | sum of square deviations: 20598819040.508682
[2025-05-17 14:17:28] 2025-05-17 18:16:56,464 | INFO     | sum of deviations: 68892752915.12587
[2025-05-17 14:17:28] 2025-05-17 18:16:56,464 | INFO     | mean x: 1747493419.3530865
[2025-05-17 14:17:28] 2025-05-17 18:16:56,464 | INFO     | mean y: 2081487.8592592592
[2025-05-17 14:17:28] 2025-05-17 18:16:56,464 | INFO     | -- intersect: -5842410476.633848
[2025-05-17 14:17:28] 2025-05-17 18:16:56,464 | INFO     | intersect: -5842410476.633848
[2025-05-17 14:17:28] 2025-05-17 18:16:56,465 | INFO     | chi2: 1.2111649875022548
[2025-05-17 14:17:28] 2025-05-17 18:16:56,465 | INFO     | current chi2=1.2111649875022548 (change=54.588129262824715 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,465 | INFO     | sum of square deviations: 19845235714.877342
[2025-05-17 14:17:28] 2025-05-17 18:16:56,485 | INFO     | sum of deviations: 19296039477.879993
[2025-05-17 14:17:28] 2025-05-17 18:16:56,485 | INFO     | mean x: 1747493571.8575
[2025-05-17 14:17:28] 2025-05-17 18:16:56,485 | INFO     | mean y: 2091497.84
[2025-05-17 14:17:28] 2025-05-17 18:16:56,485 | INFO     | -- intersect: -1697042008.7791858
[2025-05-17 14:17:28] 2025-05-17 18:16:56,485 | INFO     | intersect: -1697042008.7791858
[2025-05-17 14:17:28] 2025-05-17 18:16:56,486 | INFO     | chi2: 0.3356877371992906
[2025-05-17 14:17:28] 2025-05-17 18:16:56,486 | INFO     | current chi2=0.3356877371992906 (change=72.2838968544188 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,499 | INFO     | sum of square deviations: 19110257389.230198
[2025-05-17 14:17:28] 2025-05-17 18:16:56,518 | INFO     | sum of deviations: 1697445091.5113926
[2025-05-17 14:17:28] 2025-05-17 18:16:56,518 | INFO     | mean x: 1747493724.3620253
[2025-05-17 14:17:28] 2025-05-17 18:16:56,518 | INFO     | mean y: 2095133.6607594937
[2025-05-17 14:17:28] 2025-05-17 18:16:56,518 | INFO     | -- intersect: -153123845.57376194
[2025-05-17 14:17:28] 2025-05-17 18:16:56,519 | INFO     | intersect: -153123845.57376194
[2025-05-17 14:17:28] 2025-05-17 18:16:56,519 | INFO     | chi2: 0.19974839075911838
[2025-05-17 14:17:28] 2025-05-17 18:16:56,519 | INFO     | current chi2=0.19974839075911838 (change=40.49577371349373 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,519 | INFO     | sum of square deviations: 18393651501.066628
[2025-05-17 14:17:28] 2025-05-17 18:16:56,540 | INFO     | sum of deviations: -1967981804.5333333
[2025-05-17 14:17:28] 2025-05-17 18:16:56,540 | INFO     | mean x: 1747493876.8666666
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | mean y: 2095912.3743589744
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | -- intersect: 189064560.38900617
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | intersect: 189064560.38900617
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | chi2: 0.1947179879061076
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | current chi2=0.1947179879061076 (change=2.5183696518872485 %)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,541 | INFO     | left removable region: 50
[2025-05-17 14:17:28] 2025-05-17 18:16:56,542 | INFO     | sum of square deviations: 14346736634.234037
[2025-05-17 14:17:28] 2025-05-17 18:16:56,553 | INFO     | sum of deviations: 6988681508.337046
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | mean x: 1747494456.3760445
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | mean y: 2095328.43454039
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | -- intersect: -849156249.1580238
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | intersect: -849156249.1580238
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | chi2: 0.15061167018777136
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | -- intersect: -849156249.1580238
[2025-05-17 14:17:28] 2025-05-17 18:16:56,554 | INFO     | current memory leak: 0.49 B/s (using 359 data points, chi2=0.15)
[2025-05-17 14:17:28] 2025-05-17 18:16:56,571 | INFO     | ..............................
[2025-05-17 14:17:28] 2025-05-17 18:16:56,571 | INFO     | . Timing measurements:
[2025-05-17 14:17:28] 2025-05-17 18:16:56,571 | INFO     | . get job = 0 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,571 | INFO     | . initial setup = 1 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | . payload setup = 8 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | . stage-in = 0 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | . payload execution = 25303 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | . stage-out = 11 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | . log creation = 0 s
[2025-05-17 14:17:28] 2025-05-17 18:16:56,572 | INFO     | ..............................
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | 
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | job summary report
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | --------------------------------------------------
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | PanDA job id: 6653392423
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | task id: 44638099
[2025-05-17 14:17:28] 2025-05-17 18:16:57,289 | INFO     | errors: (none)
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | pilot state: finished 
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | transexitcode: 0
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | exeerrorcode: 0
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | exeerrordiag: 
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | exitcode: 0
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | exitmsg: OK
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | cpuconsumptiontime: 44306 s
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | nevents: 400
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | neventsw: 0
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | pid: 315372
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | pgrp: 315372
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | corecount: 8
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | event service: False
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | sizes: {0: 2393712, 6: 2393918, 11: 2393946, 25318: 2428409, 25320: 2428408, 25334: 2437433, 25335: 2437617, 25346: 2437787}
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | --------------------------------------------------
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | 
[2025-05-17 14:17:28] 2025-05-17 18:16:57,290 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | job 6653392423 has completed (purged errors)
[2025-05-17 14:17:28] 2025-05-17 18:16:57,446 | INFO     | overall cleanup function is called
[2025-05-17 14:17:28] 2025-05-17 18:16:58,461 | INFO     | --- collectZombieJob: --- 10, [315372]
[2025-05-17 14:17:28] 2025-05-17 18:16:58,461 | INFO     | zombie collector waiting for pid 315372
[2025-05-17 14:17:28] 2025-05-17 18:16:58,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 14:17:28] 2025-05-17 18:16:58,461 | INFO     | collected zombie processes
[2025-05-17 14:17:28] 2025-05-17 18:16:58,462 | INFO     | will attempt to kill all subprocesses of pid=315372
[2025-05-17 14:17:28] 2025-05-17 18:17:09,636 | INFO     | process IDs to be killed: [315372] (in reverse order)
[2025-05-17 14:17:28] 2025-05-17 18:17:10,343 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 14:17:28] 2025-05-17 18:17:10,343 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 14:17:28] 2025-05-17 18:17:10,733 | INFO     | did not find any defunct processes belonging to 315372
[2025-05-17 14:17:28] 2025-05-17 18:17:11,446 | INFO     | did not find any defunct processes belonging to 315372
[2025-05-17 14:17:28] 2025-05-17 18:17:11,446 | INFO     | ready for new job
[2025-05-17 14:17:28] 2025-05-17 18:17:11,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 14:17:28] 2025-05-17 18:17:11,448 | INFO     | **************************************
[2025-05-17 14:17:28] 2025-05-17 18:17:11,448 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 14:17:28] 2025-05-17 18:17:11,449 | INFO     | **************************************
[2025-05-17 14:17:28] 2025-05-17 18:17:11,449 | INFO     | 
[2025-05-17 14:17:28] 2025-05-17 18:17:11,464 | INFO     | architecture information:
[2025-05-17 14:17:28] 2025-05-17 18:17:11,468 | INFO     | executing command: cat /etc/os-release
[2025-05-17 14:17:28] 2025-05-17 18:17:11,613 | INFO     | cat /etc/os-release:
[2025-05-17 14:17:28] NAME="CentOS Linux"
[2025-05-17 14:17:28] VERSION="7 (Core)"
[2025-05-17 14:17:28] ID="centos"
[2025-05-17 14:17:28] ID_LIKE="rhel fedora"
[2025-05-17 14:17:28] VERSION_ID="7"
[2025-05-17 14:17:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 14:17:28] ANSI_COLOR="0;31"
[2025-05-17 14:17:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 14:17:28] HOME_URL="https://www.centos.org/"
[2025-05-17 14:17:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 14:17:28] 
[2025-05-17 14:17:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 14:17:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 14:17:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 14:17:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 14:17:28] 
[2025-05-17 14:17:28] 2025-05-17 18:17:11,614 | INFO     | **************************************
[2025-05-17 14:17:28] 2025-05-17 18:17:12,131 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-17 14:17:28] 2025-05-17 18:17:12,379 | INFO     | sufficient remaining disk space (124492185600 B)
[2025-05-17 14:17:28] 2025-05-17 18:17:12,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 14:17:28] 2025-05-17 18:17:12,385 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 14:17:28] 2025-05-17 18:17:12,385 | INFO     | update_server=False
[2025-05-17 14:17:28] 2025-05-17 18:17:12,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 14:17:28] 2025-05-17 18:17:12,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 14:17:28] 2025-05-17 18:17:12,602 | INFO     | all data control threads have been joined
[2025-05-17 14:17:28] 2025-05-17 18:17:12,602 | INFO     | all payload control threads have been joined
[2025-05-17 14:17:28] 2025-05-17 18:17:13,161 | INFO     | all job control threads have been joined
[2025-05-17 14:17:28] 2025-05-17 18:17:13,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:17:28] 2025-05-17 18:17:13,174 | INFO     | aborting loop
[2025-05-17 14:17:28] 2025-05-17 18:17:13,418 | INFO     | [job] retrieve thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:13,646 | INFO     | [payload] control thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:13,647 | INFO     | [data] control thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,201 | INFO     | [job] validate thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,202 | INFO     | [job] job monitor thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,210 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,211 | INFO     | [job] control thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,313 | INFO     | [data] copytool_in thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,346 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,346 | INFO     | [payload] validate_post thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,456 | INFO     | [data] copytool_out thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,571 | INFO     | [payload] failed_post thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,571 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:14,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:15,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 14:17:28] 2025-05-17 18:17:15,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 14:17:28] 2025-05-17 18:17:16,276 | INFO     | [job] queue monitor thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:16,515 | INFO     | PID=278026 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-17 14:17:28] 2025-05-17 18:17:16,515 | INFO     | .. there are 66 such processes running
[2025-05-17 14:17:28] 2025-05-17 18:17:16,515 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 14:17:28] 2025-05-17 18:17:16,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 14:17:28] 2025-05-17 18:17:16,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 14:17:28] 2025-05-17 18:17:19,200 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 14:17:28] 2025-05-17 18:17:19,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461496796992)>', '<ExcThread(monitor, started 140461150803712)>']
[2025-05-17 14:17:28] 2025-05-17 18:17:20,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 14:17:28] 2025-05-17 18:17:20,561 | INFO     | [monitor] control thread has ended
[2025-05-17 14:17:28] 2025-05-17 18:17:24,603 | INFO     | all workflow threads have been joined
[2025-05-17 14:17:28] 2025-05-17 18:17:24,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 14:17:28] 2025-05-17 18:17:24,604 | INFO     | traces error code: 0
[2025-05-17 14:17:28] 2025-05-17 18:17:24,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 14:17:28] 2025-05-17 18:17:27,612 [wrapper] ==== pilot stdout END ====
[2025-05-17 14:17:28] 2025-05-17 18:17:27,624 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 14:17:28] 2025-05-17 18:17:27,628 [wrapper] pilotpid: 278026
[2025-05-17 14:17:28] 2025-05-17 18:17:27,632 [wrapper] Pilot exit status: 0
[2025-05-17 14:17:28] 2025-05-17 18:17:27,663 [wrapper] pandaids: 6653392423 6653392423
[2025-05-17 14:17:28] 2025-05-17 18:17:27,820 [wrapper] cleanup supervisor_pilot  703346 278028
[2025-05-17 14:17:28] 2025-05-17 18:17:27,831 [wrapper] Test setup, not cleaning
[2025-05-17 14:17:28] 2025-05-17 18:17:27,838 [wrapper] apfmon messages muted
[2025-05-17 14:17:28] 2025-05-17 18:17:27,845 [wrapper] ==== wrapper stdout END ====
[2025-05-17 14:17:28] 2025-05-17 18:17:27,849 [wrapper] ==== wrapper stderr END ====
[2025-05-17 14:17:28]  *** Error codes and diagnostics ***
[2025-05-17 14:17:28]     "exeErrorCode": 0,
[2025-05-17 14:17:28]     "exeErrorDiag": "",
[2025-05-17 14:17:28]     "pilotErrorCode": 0,
[2025-05-17 14:17:28]     "pilotErrorDiag": "",
[2025-05-17 14:17:28]  *** Listing of results directory ***
[2025-05-17 14:17:28] total 637880
[2025-05-17 14:17:28] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas    495897 May 17 01:37 pilot3.tar.gz
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas      5111 May 17 01:43 queuedata.json
[2025-05-17 14:17:28] -rwx------. 1 boincer umatlas     37140 May 17 01:46 runpilot2-wrapper.sh
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas       100 May 17 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 14:17:28] -rwxr-xr-x. 1 boincer umatlas      7986 May 17 04:18 run_atlas
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas       105 May 17 04:18 job.xml
[2025-05-17 14:17:28] -rw-r--r--. 3 boincer umatlas 222908725 May 17 04:18 EVNT.44638096._002037.pool.root.1
[2025-05-17 14:17:28] -rw-r--r--. 3 boincer umatlas 222908725 May 17 04:18 ATLAS.root_0
[2025-05-17 14:17:28] -rw-r--r--. 2 boincer umatlas     17569 May 17 04:18 start_atlas.sh
[2025-05-17 14:17:28] drwxrwx--x. 2 boincer umatlas      4096 May 17 04:18 shared
[2025-05-17 14:17:28] -rw-r--r--. 2 boincer umatlas    508882 May 17 04:18 input.tar.gz
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas         0 May 17 04:18 boinc_lockfile
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas      2539 May 17 07:14 pandaJob.out
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas       467 May 17 07:14 setup.sh.local
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas    994635 May 17 07:14 agis_schedconf.cvmfs.json
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas      6934 May 17 14:09 init_data.xml
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas 199055201 May 17 14:15 HITS.44638099._050914.pool.root.1
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas       530 May 17 14:16 boinc_task_state.xml
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas      1033 May 17 14:16 memory_monitor_summary.json
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas   1596741 May 17 14:16 agis_ddmendpoints.agis.ALL.json
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas    467271 May 17 14:16 log.44638099._050914.job.log.tgz.1
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas        96 May 17 14:16 pilot_heartbeat.json
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas      7689 May 17 14:16 heartbeat.json
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas      4748 May 17 14:17 pilotlog.txt
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas      8192 May 17 14:17 boinc_mmap_file
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas        28 May 17 14:17 wrapper_checkpoint.txt
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas   1767892 May 17 14:17 log.44638099._050914.job.log.1
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas       357 May 17 14:17 output.list
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas       620 May 17 14:17 runtime_log
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas   2252800 May 17 14:17 result.tar.gz
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas     11499 May 17 14:17 runtime_log.err
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas       784 May 17 14:17 8mcMDmqYPa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhpNKDmG3kOzn.diag
[2025-05-17 14:17:28] -rw-r--r--. 1 boincer umatlas     23236 May 17 14:17 stderr.txt
[2025-05-17 14:17:28] HITS file was successfully produced:
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas 199055201 May 17 14:15 shared/HITS.pool.root.1
[2025-05-17 14:17:28]  *** Contents of shared directory: ***
[2025-05-17 14:17:28] total 414804
[2025-05-17 14:17:28] -rw-r--r--. 3 boincer umatlas 222908725 May 17 04:18 ATLAS.root_0
[2025-05-17 14:17:28] -rw-r--r--. 2 boincer umatlas     17569 May 17 04:18 start_atlas.sh
[2025-05-17 14:17:28] -rw-r--r--. 2 boincer umatlas    508882 May 17 04:18 input.tar.gz
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas 199055201 May 17 14:15 HITS.pool.root.1
[2025-05-17 14:17:28] -rw-------. 1 boincer umatlas   2252800 May 17 14:17 result.tar.gz
14:17:29 (259347): run_atlas exited; CPU time 45438.563269
14:17:29 (259347): called boinc_finish(0)

</stderr_txt>
]]>

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