Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:56:40 (25909): wrapper (7.7.26015): starting
03:56:40 (25909): wrapper: running run_atlas (--nthreads 8)
[2025-05-18 03:56:40] Arguments: --nthreads 8
[2025-05-18 03:56:40] Threads: 8
[2025-05-18 03:56:40] Checking for CVMFS
[2025-05-18 03:56:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-18 03:56:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-18 03:56:41] Running cvmfs_config stat atlas.cern.ch
[2025-05-18 03:56:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-18 03:56:42] 2.11.2.0 9407 8085 75680 146119 0 113 14904822 25165824 4315 130560 0 5825408 99.815 7197140 1173 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-18 03:56:42] CVMFS is ok
[2025-05-18 03:56:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-18 03:56:42] Checking for apptainer binary...
[2025-05-18 03:56:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-18 03:56:42] Running /usr/bin/apptainer --version
[2025-05-18 03:56:42] apptainer version 1.3.2-1.el7
[2025-05-18 03:56:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-18 03:56:47] cg-vwn416.simple-grid.lan
[2025-05-18 03:56:47] apptainer works
[2025-05-18 03:56:47] Set ATHENA_PROC_NUMBER=8
[2025-05-18 03:56:47] Set ATHENA_CORE_NUMBER=8
[2025-05-18 03:56:47] Starting ATLAS job with PandaID=6652206963
[2025-05-18 03:56:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-18 09:05:34]  *** The last 200 lines of the pilot log: ***
[2025-05-18 09:05:34] 2025-05-18 07:03:26,776 | INFO     | mean y: 2433934.2341137123
[2025-05-18 09:05:34] 2025-05-18 07:03:26,776 | INFO     | -- intersect: -26844712852.446896
[2025-05-18 09:05:34] 2025-05-18 07:03:26,776 | INFO     | intersect: -26844712852.446896
[2025-05-18 09:05:34] 2025-05-18 07:03:26,777 | INFO     | chi2: 4.928443692415357
[2025-05-18 09:05:34] 2025-05-18 07:03:26,777 | INFO     | sum of square deviations: 7879803557.5
[2025-05-18 09:05:34] 2025-05-18 07:03:26,780 | INFO     | sum of deviations: 144565585429.99985
[2025-05-18 09:05:34] 2025-05-18 07:03:26,780 | INFO     | mean x: 1747542419.5
[2025-05-18 09:05:34] 2025-05-18 07:03:26,780 | INFO     | mean y: 2440258.551020408
[2025-05-18 09:05:34] 2025-05-18 07:03:26,780 | INFO     | -- intersect: -32058573838.471523
[2025-05-18 09:05:34] 2025-05-18 07:03:26,780 | INFO     | intersect: -32058573838.471523
[2025-05-18 09:05:34] 2025-05-18 07:03:26,781 | INFO     | chi2: 4.165461659122433
[2025-05-18 09:05:34] 2025-05-18 07:03:26,781 | INFO     | current chi2=4.165461659122433 (change=15.481196112012348 %)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,781 | INFO     | right removable region: 293
[2025-05-18 09:05:34] 2025-05-18 07:03:26,782 | INFO     | sum of square deviations: 7879803557.5
[2025-05-18 09:05:34] 2025-05-18 07:03:26,784 | INFO     | sum of deviations: 52328364897.499985
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | mean x: 1747542724.5
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | mean y: 2461843.8469387754
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | -- intersect: -11602656569.86896
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | intersect: -11602656569.86896
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | chi2: 2.3632027964796722
[2025-05-18 09:05:34] 2025-05-18 07:03:26,785 | INFO     | current chi2=2.3632027964796722 (change=52.04971500198876 %)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,786 | INFO     | sum of square deviations: 7484568240.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,798 | INFO     | sum of deviations: -1313392281.0000076
[2025-05-18 09:05:34] 2025-05-18 07:03:26,798 | INFO     | mean x: 1747542877.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,798 | INFO     | mean y: 2482541.8269896195
[2025-05-18 09:05:34] 2025-05-18 07:03:26,798 | INFO     | -- intersect: 309141423.3776969
[2025-05-18 09:05:34] 2025-05-18 07:03:26,798 | INFO     | intersect: 309141423.3776969
[2025-05-18 09:05:34] 2025-05-18 07:03:26,799 | INFO     | chi2: 1.1669494347972234
[2025-05-18 09:05:34] 2025-05-18 07:03:26,799 | INFO     | current chi2=1.1669494347972234 (change=50.62000448985753 %)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,799 | INFO     | sum of square deviations: 7102775035.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,802 | INFO     | sum of deviations: -21214390046.000004
[2025-05-18 09:05:34] 2025-05-18 07:03:26,802 | INFO     | mean x: 1747543029.5
[2025-05-18 09:05:34] 2025-05-18 07:03:26,802 | INFO     | mean y: 2490427.7253521127
[2025-05-18 09:05:34] 2025-05-18 07:03:26,802 | INFO     | -- intersect: 5222008048.2748375
[2025-05-18 09:05:34] 2025-05-18 07:03:26,803 | INFO     | intersect: 5222008048.2748375
[2025-05-18 09:05:34] 2025-05-18 07:03:26,803 | INFO     | chi2: 0.8680978706048624
[2025-05-18 09:05:34] 2025-05-18 07:03:26,803 | INFO     | current chi2=0.8680978706048624 (change=25.609641281868505 %)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,804 | INFO     | sum of square deviations: 6734191380.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,806 | INFO     | sum of deviations: -12287547261.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,806 | INFO     | mean x: 1747543182.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,806 | INFO     | mean y: 2486731.70609319
[2025-05-18 09:05:34] 2025-05-18 07:03:26,806 | INFO     | -- intersect: 3191142685.7433434
[2025-05-18 09:05:34] 2025-05-18 07:03:26,807 | INFO     | intersect: 3191142685.7433434
[2025-05-18 09:05:34] 2025-05-18 07:03:26,807 | INFO     | chi2: 0.8364769294824957
[2025-05-18 09:05:34] 2025-05-18 07:03:26,807 | INFO     | current chi2=0.8364769294824957 (change=3.6425548539053834 %)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,807 | INFO     | left removable region: 40
[2025-05-18 09:05:34] 2025-05-18 07:03:26,808 | INFO     | sum of square deviations: 5021496942.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,810 | INFO     | sum of deviations: 8120563390.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,810 | INFO     | mean x: 1747543609.0
[2025-05-18 09:05:34] 2025-05-18 07:03:26,810 | INFO     | mean y: 2493649.6324110674
[2025-05-18 09:05:34] 2025-05-18 07:03:26,810 | INFO     | -- intersect: -2823563762.646279
[2025-05-18 09:05:34] 2025-05-18 07:03:26,810 | INFO     | intersect: -2823563762.646279
[2025-05-18 09:05:34] 2025-05-18 07:03:26,811 | INFO     | chi2: 0.0007009710523792572
[2025-05-18 09:05:34] 2025-05-18 07:03:26,811 | INFO     | -- intersect: -2823563762.646279
[2025-05-18 09:05:34] 2025-05-18 07:03:26,811 | INFO     | current memory leak: 1.62 B/s (using 253 data points, chi2=0.00)
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | ..............................
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . Timing measurements:
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . get job = 0 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . initial setup = 2 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . payload setup = 14 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . stage-in = 0 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . payload execution = 18242 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,812 | INFO     | . stage-out = 3 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,813 | INFO     | . log creation = 1 s
[2025-05-18 09:05:34] 2025-05-18 07:03:26,813 | INFO     | ..............................
[2025-05-18 09:05:34] 2025-05-18 07:03:27,330 | INFO     | 
[2025-05-18 09:05:34] 2025-05-18 07:03:27,330 | INFO     | job summary report
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | --------------------------------------------------
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | PanDA job id: 6652206963
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | task id: 44638099
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | errors: (none)
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | pilot state: finished 
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | transexitcode: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | exeerrorcode: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | exeerrordiag: 
[2025-05-18 09:05:34] 2025-05-18 07:03:27,331 | INFO     | exitcode: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | exitmsg: OK
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | cpuconsumptiontime: 68106 s
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | nevents: 400
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | neventsw: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | pid: 7001
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | pgrp: 7001
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | corecount: 8
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | event service: False
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | sizes: {0: 2393491, 1: 2393690, 8: 2393896, 12: 2393924, 18261: 2425525, 18265: 2434466, 18267: 2434650, 18357: 2434820}
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | --------------------------------------------------
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | 
[2025-05-18 09:05:34] 2025-05-18 07:03:27,332 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-05-18 09:05:34] 2025-05-18 07:03:27,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | job 6652206963 has completed (purged errors)
[2025-05-18 09:05:34] 2025-05-18 07:03:27,632 | INFO     | overall cleanup function is called
[2025-05-18 09:05:34] 2025-05-18 07:03:28,641 | INFO     | --- collectZombieJob: --- 10, [7001]
[2025-05-18 09:05:34] 2025-05-18 07:03:28,641 | INFO     | zombie collector waiting for pid 7001
[2025-05-18 09:05:34] 2025-05-18 07:03:28,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-18 09:05:34] 2025-05-18 07:03:28,642 | INFO     | collected zombie processes
[2025-05-18 09:05:34] 2025-05-18 07:03:28,642 | INFO     | will attempt to kill all subprocesses of pid=7001
[2025-05-18 09:05:34] 2025-05-18 07:03:28,778 | INFO     | process IDs to be killed: [7001] (in reverse order)
[2025-05-18 09:05:34] 2025-05-18 07:03:29,096 | INFO     | PID=30955 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-18 09:05:34] 2025-05-18 07:03:29,096 | INFO     | .. there are 9 such processes running
[2025-05-18 09:05:34] 2025-05-18 07:03:29,645 | WARNING  | found no corresponding commands to process id(s)
[2025-05-18 09:05:34] 2025-05-18 07:03:29,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-18 09:05:34] 2025-05-18 07:03:29,648 | INFO     | did not find any defunct processes belonging to 7001
[2025-05-18 09:05:34] 2025-05-18 07:03:29,651 | INFO     | did not find any defunct processes belonging to 7001
[2025-05-18 09:05:34] 2025-05-18 07:03:29,652 | INFO     | ready for new job
[2025-05-18 09:05:34] 2025-05-18 07:03:29,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-18 09:05:34] 2025-05-18 07:03:29,654 | INFO     | **************************************
[2025-05-18 09:05:34] 2025-05-18 07:03:29,654 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-18 09:05:34] 2025-05-18 07:03:29,654 | INFO     | **************************************
[2025-05-18 09:05:34] 2025-05-18 07:03:29,654 | INFO     | 
[2025-05-18 09:05:34] 2025-05-18 07:03:29,655 | INFO     | pilot is running in a VM
[2025-05-18 09:05:34] 2025-05-18 07:03:29,655 | INFO     | architecture information:
[2025-05-18 09:05:34] 2025-05-18 07:03:29,668 | INFO     | executing command: cat /etc/os-release
[2025-05-18 09:05:34] 2025-05-18 07:03:29,936 | INFO     | cat /etc/os-release:
[2025-05-18 09:05:34] NAME="CentOS Linux"
[2025-05-18 09:05:34] VERSION="7 (Core)"
[2025-05-18 09:05:34] ID="centos"
[2025-05-18 09:05:34] ID_LIKE="rhel fedora"
[2025-05-18 09:05:34] VERSION_ID="7"
[2025-05-18 09:05:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-18 09:05:34] ANSI_COLOR="0;31"
[2025-05-18 09:05:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-18 09:05:34] HOME_URL="https://www.centos.org/"
[2025-05-18 09:05:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-18 09:05:34] 
[2025-05-18 09:05:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-18 09:05:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-18 09:05:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-18 09:05:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-18 09:05:34] 
[2025-05-18 09:05:34] 2025-05-18 07:03:29,936 | INFO     | **************************************
[2025-05-18 09:05:34] 2025-05-18 07:03:30,440 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-05-18 09:05:34] 2025-05-18 07:03:30,674 | INFO     | sufficient remaining disk space (496256417792 B)
[2025-05-18 09:05:34] 2025-05-18 07:03:30,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-18 09:05:34] 2025-05-18 07:03:30,674 | INFO     | current server update state: UPDATING_FINAL
[2025-05-18 09:05:34] 2025-05-18 07:03:30,674 | INFO     | update_server=False
[2025-05-18 09:05:34] 2025-05-18 07:03:30,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-18 09:05:34] 2025-05-18 07:03:30,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-18 09:05:34] 2025-05-18 07:03:30,676 | INFO     | aborting loop
[2025-05-18 09:05:34] 2025-05-18 07:03:30,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-18 09:05:34] 2025-05-18 07:03:31,005 | INFO     | all data control threads have been joined
[2025-05-18 09:05:34] 2025-05-18 07:03:31,103 | INFO     | found 0 job(s) in 20 queues
[2025-05-18 09:05:34] 2025-05-18 07:03:31,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-18 09:05:34] 2025-05-18 07:03:31,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-18 09:05:34] 2025-05-18 07:03:31,513 | INFO     | all job control threads have been joined
[2025-05-18 09:05:34] 2025-05-18 07:03:31,681 | INFO     | [job] retrieve thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:31,687 | INFO     | [job] job monitor thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:31,742 | INFO     | all payload control threads have been joined
[2025-05-18 09:05:34] 2025-05-18 07:03:31,865 | INFO     | [payload] validate_post thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:31,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-18 09:05:34] 2025-05-18 07:03:32,011 | INFO     | [data] control thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,342 | INFO     | [payload] validate_pre thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,519 | INFO     | [job] control thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,663 | INFO     | [data] copytool_in thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,690 | INFO     | [data] copytool_out thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,748 | INFO     | [payload] control thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,801 | INFO     | [job] validate thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,940 | INFO     | [payload] execute_payloads thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,957 | INFO     | [job] queue monitor thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:32,977 | INFO     | [job] create_data_payload thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:33,234 | INFO     | [payload] failed_post thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:33,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-18 09:05:34] 2025-05-18 07:03:37,534 | INFO     | [data] queue_monitor thread has finished
[2025-05-18 09:05:34] 2025-05-18 07:03:38,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614079268672)>', '<ExcThread(monitor, started 140613630535424)>']
[2025-05-18 09:05:34] 2025-05-18 07:03:38,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-18 09:05:34] 2025-05-18 07:03:38,145 | INFO     | [monitor] control thread has ended
[2025-05-18 09:05:34] 2025-05-18 07:03:43,138 | INFO     | all workflow threads have been joined
[2025-05-18 09:05:34] 2025-05-18 07:03:43,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-18 09:05:34] 2025-05-18 07:03:43,139 | INFO     | traces error code: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:43,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-18 09:05:34] 2025-05-18 07:03:43,618 [wrapper] ==== pilot stdout END ====
[2025-05-18 09:05:34] 2025-05-18 07:03:43,723 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-18 09:05:34] 2025-05-18 07:03:43,839 [wrapper] pilotpid: 30955
[2025-05-18 09:05:34] 2025-05-18 07:03:43,930 [wrapper] Pilot exit status: 0
[2025-05-18 09:05:34] 2025-05-18 07:03:44,375 [wrapper] pandaids: 6652206963
[2025-05-18 09:05:34] 2025-05-18 07:03:45,205 [wrapper] cleanup supervisor_pilot  1396 30956
[2025-05-18 09:05:34] 2025-05-18 07:03:45,290 [wrapper] Test setup, not cleaning
[2025-05-18 09:05:34] 2025-05-18 07:03:45,394 [wrapper] apfmon messages muted
[2025-05-18 09:05:34] 2025-05-18 07:03:45,448 [wrapper] ==== wrapper stdout END ====
[2025-05-18 09:05:34] 2025-05-18 07:03:45,534 [wrapper] ==== wrapper stderr END ====
[2025-05-18 09:05:34]  *** Error codes and diagnostics ***
[2025-05-18 09:05:34]     "exeErrorCode": 0,
[2025-05-18 09:05:34]     "exeErrorDiag": "",
[2025-05-18 09:05:34]     "pilotErrorCode": 0,
[2025-05-18 09:05:34]     "pilotErrorDiag": "",
[2025-05-18 09:05:34]  *** Listing of results directory ***
[2025-05-18 09:05:34] total 416316
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc    495897 May 16 23:27 pilot3.tar.gz
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc      5111 May 16 23:39 queuedata.json
[2025-05-18 09:05:34] -rwx------. 1 boinc boinc     37140 May 16 23:41 runpilot2-wrapper.sh
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc       100 May 18 03:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-18 09:05:34] -rwxr-xr-x. 1 boinc boinc      7986 May 18 03:56 run_atlas
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc       105 May 18 03:56 job.xml
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc 223669005 May 18 03:56 EVNT.44638096._001234.pool.root.1
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc      6372 May 18 03:56 init_data.xml
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc     17569 May 18 03:56 start_atlas.sh
[2025-05-18 09:05:34] drwxrwx--x. 2 boinc boinc        68 May 18 03:56 shared
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc    508873 May 18 03:56 input.tar.gz
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc         0 May 18 03:56 boinc_lockfile
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc      2539 May 18 03:56 pandaJob.out
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc       424 May 18 03:56 setup.sh.local
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc    994619 May 18 03:57 agis_schedconf.cvmfs.json
[2025-05-18 09:05:34] drwx------. 4 boinc boinc      4096 May 18 03:57 pilot3
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc 194789873 May 18 09:00 HITS.44638099._045681.pool.root.1
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc       531 May 18 09:00 boinc_task_state.xml
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc      1019 May 18 09:01 memory_monitor_summary.json
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc   1596741 May 18 09:01 agis_ddmendpoints.agis.ALL.json
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc    418091 May 18 09:01 log.44638099._045681.job.log.tgz.1
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc      7686 May 18 09:03 heartbeat.json
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc        95 May 18 09:03 pilot_heartbeat.json
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc      4416 May 18 09:03 pilotlog.txt
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc   1592130 May 18 09:03 log.44638099._045681.job.log.1
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc       357 May 18 09:03 output.list
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc       620 May 18 09:03 runtime_log
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc   2027520 May 18 09:03 result.tar.gz
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc     11013 May 18 09:03 runtime_log.err
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc       657 May 18 09:03 a9gKDmDzHa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuyMKDmomoL8n.diag
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc        28 May 18 09:05 wrapper_checkpoint.txt
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc      8192 May 18 09:05 boinc_mmap_file
[2025-05-18 09:05:34] -rw-r--r--. 1 boinc boinc     20520 May 18 09:05 stderr.txt
[2025-05-18 09:05:34] HITS file was successfully produced:
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc 194789873 May 18 09:00 shared/HITS.pool.root.1
[2025-05-18 09:05:34]  *** Contents of shared directory: ***
[2025-05-18 09:05:34] total 411156
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc 223669005 May 18 03:56 ATLAS.root_0
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc     17569 May 18 03:56 start_atlas.sh
[2025-05-18 09:05:34] -rw-r--r--. 2 boinc boinc    508873 May 18 03:56 input.tar.gz
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc 194789873 May 18 09:00 HITS.pool.root.1
[2025-05-18 09:05:34] -rw-------. 1 boinc boinc   2027520 May 18 09:03 result.tar.gz
09:05:36 (25909): run_atlas exited; CPU time 68343.909762
09:05:36 (25909): called boinc_finish(0)

</stderr_txt>
]]>

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