Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:53:47 (1066713): wrapper (7.7.26015): starting
07:53:47 (1066713): wrapper: running run_atlas (--nthreads 4)
[2025-05-17 07:53:47] Arguments: --nthreads 4
[2025-05-17 07:53:47] Threads: 4
[2025-05-17 07:53:47] Checking for CVMFS
[2025-05-17 07:53:47] No cvmfs_config command found, will try listing directly
[2025-05-17 07:53:47] CVMFS is ok
[2025-05-17 07:53:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 07:53:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 07:53:47] Further information can be found at the LHC@home message board.
[2025-05-17 07:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 07:53:47] Checking for apptainer binary...
[2025-05-17 07:53:47] which: no apptainer in ((null))
[2025-05-17 07:53:47] apptainer is not installed, using version from CVMFS
[2025-05-17 07:53:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 07:53:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot16/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-05-17 07:53:47] apptainer works
[2025-05-17 07:53:47] Set ATHENA_PROC_NUMBER=4
[2025-05-17 07:53:47] Set ATHENA_CORE_NUMBER=4
[2025-05-17 07:53:47] Starting ATLAS job with PandaID=6651909665
[2025-05-17 07:53:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot16/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 11:41:34]  *** The last 200 lines of the pilot log: ***
[2025-05-17 11:41:34] 2025-05-17 09:41:19,751 | INFO     | mean x: 1747468202.5
[2025-05-17 11:41:34] 2025-05-17 09:41:19,751 | INFO     | mean y: 2305187.4266055045
[2025-05-17 11:41:34] 2025-05-17 09:41:19,751 | INFO     | -- intersect: -27621318909.35945
[2025-05-17 11:41:34] 2025-05-17 09:41:19,752 | INFO     | intersect: -27621318909.35945
[2025-05-17 11:41:34] 2025-05-17 09:41:19,752 | INFO     | chi2: 1.3555597361882568
[2025-05-17 11:41:34] 2025-05-17 09:41:19,752 | INFO     | current chi2=1.3555597361882568 (change=60.29897698085883 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,752 | INFO     | sum of square deviations: 2996454322.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | sum of deviations: 11953486678.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | mean x: 1747468355.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | mean y: 2332612.3474178403
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | -- intersect: -6968686284.338796
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | intersect: -6968686284.338796
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | chi2: 0.07111945438087085
[2025-05-17 11:41:34] 2025-05-17 09:41:19,754 | INFO     | current chi2=0.07111945438087085 (change=94.75349905413583 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,755 | INFO     | sum of square deviations: 2790348132.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,756 | INFO     | sum of deviations: 4608927132.5
[2025-05-17 11:41:34] 2025-05-17 09:41:19,756 | INFO     | mean x: 1747468507.5
[2025-05-17 11:41:34] 2025-05-17 09:41:19,756 | INFO     | mean y: 2338000.6009615385
[2025-05-17 11:41:34] 2025-05-17 09:41:19,756 | INFO     | -- intersect: -2884024071.9456296
[2025-05-17 11:41:34] 2025-05-17 09:41:19,756 | INFO     | intersect: -2884024071.9456296
[2025-05-17 11:41:34] 2025-05-17 09:41:19,757 | INFO     | chi2: 0.0028507423397601834
[2025-05-17 11:41:34] 2025-05-17 09:41:19,757 | INFO     | current chi2=0.0028507423397601834 (change=95.99161387755676 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,757 | INFO     | sum of square deviations: 2593916542.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,758 | INFO     | sum of deviations: 3646663082.0000005
[2025-05-17 11:41:34] 2025-05-17 09:41:19,758 | INFO     | mean x: 1747468660.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,759 | INFO     | mean y: 2338736.197044335
[2025-05-17 11:41:34] 2025-05-17 09:41:19,759 | INFO     | -- intersect: -2454343792.4014454
[2025-05-17 11:41:34] 2025-05-17 09:41:19,759 | INFO     | intersect: -2454343792.4014454
[2025-05-17 11:41:34] 2025-05-17 09:41:19,759 | INFO     | chi2: 0.00046124584145172627
[2025-05-17 11:41:34] 2025-05-17 09:41:19,759 | INFO     | current chi2=0.00046124584145172627 (change=83.82014975472921 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,760 | INFO     | sum of square deviations: 2406926989.5
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | sum of deviations: 3745507360.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | mean x: 1747468812.5
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | mean y: 2338655.606060606
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | -- intersect: -2716961650.19543
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | intersect: -2716961650.19543
[2025-05-17 11:41:34] 2025-05-17 09:41:19,761 | INFO     | chi2: 0.00031601566459901406
[2025-05-17 11:41:34] 2025-05-17 09:41:19,762 | INFO     | current chi2=0.00031601566459901406 (change=31.486501080554874 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,762 | INFO     | sum of square deviations: 2229146912.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,763 | INFO     | sum of deviations: 3669034100.0000005
[2025-05-17 11:41:34] 2025-05-17 09:41:19,763 | INFO     | mean x: 1747468965.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,763 | INFO     | mean y: 2338721.549222798
[2025-05-17 11:41:34] 2025-05-17 09:41:19,763 | INFO     | -- intersect: -2873884100.1777945
[2025-05-17 11:41:34] 2025-05-17 09:41:19,763 | INFO     | intersect: -2873884100.1777945
[2025-05-17 11:41:34] 2025-05-17 09:41:19,764 | INFO     | chi2: 0.00026981709292454495
[2025-05-17 11:41:34] 2025-05-17 09:41:19,764 | INFO     | current chi2=0.00026981709292454495 (change=14.619076473025332 %)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,764 | INFO     | left removable region: 60
[2025-05-17 11:41:34] 2025-05-17 09:41:19,764 | INFO     | sum of square deviations: 1199940638.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,765 | INFO     | sum of deviations: 2307758039.000001
[2025-05-17 11:41:34] 2025-05-17 09:41:19,765 | INFO     | mean x: 1747469697.0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,765 | INFO     | mean y: 2339774.3439490446
[2025-05-17 11:41:34] 2025-05-17 09:41:19,766 | INFO     | -- intersect: -3358440845.5058856
[2025-05-17 11:41:34] 2025-05-17 09:41:19,766 | INFO     | intersect: -3358440845.5058856
[2025-05-17 11:41:34] 2025-05-17 09:41:19,766 | INFO     | chi2: 0.0001370389132706555
[2025-05-17 11:41:34] 2025-05-17 09:41:19,766 | INFO     | -- intersect: -3358440845.5058856
[2025-05-17 11:41:34] 2025-05-17 09:41:19,766 | INFO     | current memory leak: 1.92 B/s (using 157 data points, chi2=0.00)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | ..............................
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . Timing measurements:
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . get job = 0 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . initial setup = 1 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . payload setup = 9 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . stage-in = 0 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . payload execution = 13594 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . stage-out = 1 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | . log creation = 0 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,767 | INFO     | ..............................
[2025-05-17 11:41:34] 2025-05-17 09:41:19,864 | INFO     | 
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | job summary report
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | --------------------------------------------------
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | PanDA job id: 6651909665
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | task id: 44638099
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | errors: (none)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | pilot state: finished 
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | transexitcode: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,865 | INFO     | exeerrorcode: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | exeerrordiag: 
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | exitcode: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | exitmsg: OK
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | cpuconsumptiontime: 48592 s
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | nevents: 400
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | neventsw: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | pid: 1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | pgrp: 1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | corecount: 4
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | event service: False
[2025-05-17 11:41:34] 2025-05-17 09:41:19,866 | INFO     | sizes: {0: 2393557, 1: 2393699, 7: 2393905, 11: 2393933, 13607: 2424486, 13608: 2424485, 13609: 2433632, 13610: 2433688, 13617: 2433858}
[2025-05-17 11:41:34] 2025-05-17 09:41:19,867 | INFO     | --------------------------------------------------
[2025-05-17 11:41:34] 2025-05-17 09:41:19,867 | INFO     | 
[2025-05-17 11:41:34] 2025-05-17 09:41:19,867 | INFO     | executing command: ls -lF /scratch/boinc/var/slot16/slots/0
[2025-05-17 11:41:34] 2025-05-17 09:41:19,896 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 11:41:34] 2025-05-17 09:41:19,898 | INFO     | job 6651909665 has completed (purged errors)
[2025-05-17 11:41:34] 2025-05-17 09:41:19,899 | INFO     | overall cleanup function is called
[2025-05-17 11:41:34] 2025-05-17 09:41:20,908 | INFO     | --- collectZombieJob: --- 10, [1077966]
[2025-05-17 11:41:34] 2025-05-17 09:41:20,910 | INFO     | zombie collector waiting for pid 1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:20,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 11:41:34] 2025-05-17 09:41:20,911 | INFO     | collected zombie processes
[2025-05-17 11:41:34] 2025-05-17 09:41:20,911 | INFO     | will attempt to kill all subprocesses of pid=1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:21,281 | INFO     | PID=1070610 has CPU usage=16.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-17 11:41:34] 2025-05-17 09:41:21,282 | INFO     | .. there are 29 such processes running
[2025-05-17 11:41:34] 2025-05-17 09:41:21,869 | INFO     | process IDs to be killed: [1077966] (in reverse order)
[2025-05-17 11:41:34] 2025-05-17 09:41:22,151 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 11:41:34] 2025-05-17 09:41:22,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 11:41:34] 2025-05-17 09:41:22,177 | INFO     | did not find any defunct processes belonging to 1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:22,200 | INFO     | did not find any defunct processes belonging to 1077966
[2025-05-17 11:41:34] 2025-05-17 09:41:22,200 | INFO     | ready for new job
[2025-05-17 11:41:34] 2025-05-17 09:41:22,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 11:41:34] 2025-05-17 09:41:22,203 | INFO     | **************************************
[2025-05-17 11:41:34] 2025-05-17 09:41:22,203 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 11:41:34] 2025-05-17 09:41:22,203 | INFO     | **************************************
[2025-05-17 11:41:34] 2025-05-17 09:41:22,203 | INFO     | 
[2025-05-17 11:41:34] 2025-05-17 09:41:22,211 | INFO     | architecture information:
[2025-05-17 11:41:34] 2025-05-17 09:41:22,212 | INFO     | executing command: cat /etc/os-release
[2025-05-17 11:41:34] 2025-05-17 09:41:22,237 | INFO     | cat /etc/os-release:
[2025-05-17 11:41:34] NAME="CentOS Linux"
[2025-05-17 11:41:34] VERSION="7 (Core)"
[2025-05-17 11:41:34] ID="centos"
[2025-05-17 11:41:34] ID_LIKE="rhel fedora"
[2025-05-17 11:41:34] VERSION_ID="7"
[2025-05-17 11:41:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 11:41:34] ANSI_COLOR="0;31"
[2025-05-17 11:41:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 11:41:34] HOME_URL="https://www.centos.org/"
[2025-05-17 11:41:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 11:41:34] 
[2025-05-17 11:41:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 11:41:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 11:41:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 11:41:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 11:41:34] 
[2025-05-17 11:41:34] 2025-05-17 09:41:22,237 | INFO     | **************************************
[2025-05-17 11:41:34] 2025-05-17 09:41:22,740 | INFO     | executing command: df -mP /scratch/boinc/var/slot16/slots/0
[2025-05-17 11:41:34] 2025-05-17 09:41:22,767 | INFO     | sufficient remaining disk space (3331863871488 B)
[2025-05-17 11:41:34] 2025-05-17 09:41:22,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 11:41:34] 2025-05-17 09:41:22,768 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 11:41:34] 2025-05-17 09:41:22,768 | INFO     | update_server=False
[2025-05-17 11:41:34] 2025-05-17 09:41:22,768 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 11:41:34] 2025-05-17 09:41:22,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 11:41:34] 2025-05-17 09:41:23,022 | INFO     | all data control threads have been joined
[2025-05-17 11:41:34] 2025-05-17 09:41:23,253 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 11:41:34] 2025-05-17 09:41:23,286 | INFO     | all payload control threads have been joined
[2025-05-17 11:41:34] 2025-05-17 09:41:23,288 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 11:41:34] 2025-05-17 09:41:23,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 11:41:34] 2025-05-17 09:41:23,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 11:41:34] 2025-05-17 09:41:23,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:41:34] 2025-05-17 09:41:23,464 | INFO     | aborting loop
[2025-05-17 11:41:34] 2025-05-17 09:41:23,773 | INFO     | [job] retrieve thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:23,986 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:23,987 | INFO     | [job] validate thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,027 | INFO     | [data] control thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,152 | INFO     | all job control threads have been joined
[2025-05-17 11:41:34] 2025-05-17 09:41:24,212 | INFO     | [payload] validate_post thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,261 | INFO     | [data] copytool_in thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,291 | INFO     | [payload] control thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,435 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,469 | INFO     | [job] job monitor thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,619 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,773 | INFO     | [data] copytool_out thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,809 | INFO     | [payload] failed_post thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:24,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:41:34] 2025-05-17 09:41:25,158 | INFO     | [job] control thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:25,886 | INFO     | [job] queue monitor thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:27,256 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 11:41:34] 2025-05-17 09:41:29,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22695467784000)>', '<ExcThread(monitor, started 22695225812736)>']
[2025-05-17 11:41:34] 2025-05-17 09:41:29,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 11:41:34] 2025-05-17 09:41:29,317 | INFO     | [monitor] control thread has ended
[2025-05-17 11:41:34] 2025-05-17 09:41:34,209 | INFO     | all workflow threads have been joined
[2025-05-17 11:41:34] 2025-05-17 09:41:34,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 11:41:34] 2025-05-17 09:41:34,212 | INFO     | traces error code: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:34,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 11:41:34] 2025-05-17 09:41:34,359 [wrapper] ==== pilot stdout END ====
[2025-05-17 11:41:34] 2025-05-17 09:41:34,363 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 11:41:34] 2025-05-17 09:41:34,368 [wrapper] pilotpid: 1070610
[2025-05-17 11:41:34] 2025-05-17 09:41:34,371 [wrapper] Pilot exit status: 0
[2025-05-17 11:41:34] 2025-05-17 09:41:34,387 [wrapper] pandaids: 6651909665
[2025-05-17 11:41:34] 2025-05-17 09:41:34,539 [wrapper] cleanup supervisor_pilot 2271174 1070611
[2025-05-17 11:41:34] 2025-05-17 09:41:34,544 [wrapper] Test setup, not cleaning
[2025-05-17 11:41:34] 2025-05-17 09:41:34,548 [wrapper] apfmon messages muted
[2025-05-17 11:41:34] 2025-05-17 09:41:34,553 [wrapper] ==== wrapper stdout END ====
[2025-05-17 11:41:34] 2025-05-17 09:41:34,557 [wrapper] ==== wrapper stderr END ====
[2025-05-17 11:41:34]  *** Error codes and diagnostics ***
[2025-05-17 11:41:34]     "exeErrorCode": 0,
[2025-05-17 11:41:34]     "exeErrorDiag": "",
[2025-05-17 11:41:34]     "pilotErrorCode": 0,
[2025-05-17 11:41:34]     "pilotErrorDiag": "",
[2025-05-17 11:41:34]  *** Listing of results directory ***
[2025-05-17 11:41:34] total 427352
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc    495897 May 16 18:33 pilot3.tar.gz
[2025-05-17 11:41:34] -rwx------ 1 boinc boinc     37140 May 16 18:45 runpilot2-wrapper.sh
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc      5111 May 16 18:45 queuedata.json
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc       100 May 17 07:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 11:41:34] -rwxr-xr-x 1 boinc boinc      7986 May 17 07:53 run_atlas
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc       105 May 17 07:53 job.xml
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc 224828320 May 17 07:53 EVNT.44638096._001001.pool.root.1
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc      6675 May 17 07:53 init_data.xml
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc     17569 May 17 07:53 start_atlas.sh
[2025-05-17 11:41:34] drwxrwx--x 2 boinc boinc      4096 May 17 07:53 shared
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc    508870 May 17 07:53 input.tar.gz
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc         0 May 17 07:53 boinc_lockfile
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc      2538 May 17 07:53 pandaJob.out
[2025-05-17 11:41:34] -rw------- 1 boinc boinc       424 May 17 07:53 setup.sh.local
[2025-05-17 11:41:34] -rw------- 1 boinc boinc    994643 May 17 07:54 agis_schedconf.cvmfs.json
[2025-05-17 11:41:34] drwx------ 4 boinc boinc      4096 May 17 07:54 pilot3
[2025-05-17 11:41:34] -rw------- 1 boinc boinc 205798912 May 17 11:40 HITS.44638099._042706.pool.root.1
[2025-05-17 11:41:34] -rw------- 1 boinc boinc        95 May 17 11:41 pilot_heartbeat.json
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc       530 May 17 11:41 boinc_task_state.xml
[2025-05-17 11:41:34] -rw------- 1 boinc boinc      1027 May 17 11:41 memory_monitor_summary.json
[2025-05-17 11:41:34] -rw------- 1 boinc boinc   1596741 May 17 11:41 agis_ddmendpoints.agis.ALL.json
[2025-05-17 11:41:34] -rw------- 1 boinc boinc    328193 May 17 11:41 log.44638099._042706.job.log.tgz.1
[2025-05-17 11:41:34] -rw------- 1 boinc boinc      7697 May 17 11:41 heartbeat.json
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc        28 May 17 11:41 wrapper_checkpoint.txt
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc      8192 May 17 11:41 boinc_mmap_file
[2025-05-17 11:41:34] -rw------- 1 boinc boinc      4364 May 17 11:41 pilotlog.txt
[2025-05-17 11:41:34] -rw------- 1 boinc boinc   1237375 May 17 11:41 log.44638099._042706.job.log.1
[2025-05-17 11:41:34] -rw------- 1 boinc boinc       357 May 17 11:41 output.list
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc       620 May 17 11:41 runtime_log
[2025-05-17 11:41:34] -rw------- 1 boinc boinc   1587200 May 17 11:41 result.tar.gz
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc     11424 May 17 11:41 runtime_log.err
[2025-05-17 11:41:34] -rw------- 1 boinc boinc       666 May 17 11:41 S0uMDm4MDa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4QMKDmdGHXMm.diag
[2025-05-17 11:41:34] -rw-r--r-- 1 boinc boinc     20704 May 17 11:41 stderr.txt
[2025-05-17 11:41:34] HITS file was successfully produced:
[2025-05-17 11:41:34] -rw------- 1 boinc boinc 205798912 May 17 11:40 shared/HITS.pool.root.1
[2025-05-17 11:41:34]  *** Contents of shared directory: ***
[2025-05-17 11:41:34] total 422616
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc 224828320 May 17 07:53 ATLAS.root_0
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc     17569 May 17 07:53 start_atlas.sh
[2025-05-17 11:41:34] -rw-r--r-- 2 boinc boinc    508870 May 17 07:53 input.tar.gz
[2025-05-17 11:41:34] -rw------- 1 boinc boinc 205798912 May 17 11:40 HITS.pool.root.1
[2025-05-17 11:41:34] -rw------- 1 boinc boinc   1587200 May 17 11:41 result.tar.gz
11:41:36 (1066713): run_atlas exited; CPU time 49377.369828
11:41:36 (1066713): called boinc_finish(0)

</stderr_txt>
]]>

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