Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:25:49 (4878): wrapper (7.7.26015): starting
16:25:49 (4878): wrapper: running run_atlas (--nthreads 12)
[2025-05-16 16:25:49] Arguments: --nthreads 12
[2025-05-16 16:25:49] Threads: 12
[2025-05-16 16:25:49] Checking for CVMFS
[2025-05-16 16:25:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-16 16:25:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-16 16:25:49] Running cvmfs_config stat atlas.cern.ch
[2025-05-16 16:25:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-16 16:25:49] 2.11.2.0 2987 8753 81680 146076 3 56 18141340 20275200 1 130560 0 3256030 99.985 1629041 53868 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-16 16:25:49] CVMFS is ok
[2025-05-16 16:25:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-16 16:25:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-16 16:25:49] Further information can be found at the LHC@home message board.
[2025-05-16 16:25:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-16 16:25:49] Checking for apptainer binary...
[2025-05-16 16:25:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-16 16:25:49] Running /usr/bin/apptainer --version
[2025-05-16 16:25:49] apptainer version 1.3.2-1.el7
[2025-05-16 16:25:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-16 16:25:51] c-205-19.aglt2.org
[2025-05-16 16:25:51] apptainer works
[2025-05-16 16:25:51] Set ATHENA_PROC_NUMBER=12
[2025-05-16 16:25:51] Set ATHENA_CORE_NUMBER=12
[2025-05-16 16:25:51] Starting ATLAS job with PandaID=6651909591
[2025-05-16 16:25:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-16 18:03:37]  *** The last 200 lines of the pilot log: ***
[2025-05-16 18:03:37]  is_altstaged=None
[2025-05-16 18:03:37]  is_tar=False
[2025-05-16 18:03:37]  lfn=log.44638099._042632.job.log.tgz.1
[2025-05-16 18:03:37]  mtime=0
[2025-05-16 18:03:37]  protocol_id=None
[2025-05-16 18:03:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-16 18:03:37]  replicas=None
[2025-05-16 18:03:37]  scope=mc23_13p6TeV
[2025-05-16 18:03:37]  status=None
[2025-05-16 18:03:37]  status_code=0
[2025-05-16 18:03:37]  storage_token=
[2025-05-16 18:03:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6651909591/log.44638099._042632.job.log.tgz.1
[2025-05-16 18:03:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/ff/log.44638099._042632.job.log.tgz.1
[2025-05-16 18:03:37]  workdir=None
[2025-05-16 18:03:37] ]
[2025-05-16 18:03:37] 2025-05-16 22:03:18,210 | INFO     | transferring file log.44638099._042632.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6651909591/log.44638099._042632.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-05-16 18:03:37] 2025-05-16 22:03:18,210 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6651909591/log.44638099._042632.job.log.tgz.1 /tmp/boinchome/slots/0/log.44638099._042632.job
[2025-05-16 18:03:37] 2025-05-16 22:03:18,232 | INFO     | adding to output.list: log.44638099._042632.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/ff/log.44638099._042632.job.log.tg
[2025-05-16 18:03:37] 2025-05-16 22:03:18,233 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-16 18:03:37] 2025-05-16 22:03:18,233 | INFO     | summary of transferred files:
[2025-05-16 18:03:37] 2025-05-16 22:03:18,233 | INFO     |  -- lfn=log.44638099._042632.job.log.tgz.1, status_code=0, status=transferred
[2025-05-16 18:03:37] 2025-05-16 22:03:18,234 | INFO     | stage-out finished correctly
[2025-05-16 18:03:37] 2025-05-16 22:03:20,250 | INFO     | monitor loop #434: job 0:6651909591 is in state 'finished'
[2025-05-16 18:03:37] 2025-05-16 22:03:20,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-16 18:03:37] 2025-05-16 22:03:20,802 | INFO     | 5839s have passed since pilot start - server update state is 'RUNNING'
[2025-05-16 18:03:37] 2025-05-16 22:03:21,528 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-16 18:03:37] 2025-05-16 22:03:21,676 | INFO     | job 6651909591 has state=finished
[2025-05-16 18:03:37] 2025-05-16 22:03:21,676 | INFO     | preparing for final server update for job 6651909591 in state='finished'
[2025-05-16 18:03:37] 2025-05-16 22:03:21,677 | INFO     | this job has now completed (state=finished)
[2025-05-16 18:03:37] 2025-05-16 22:03:21,677 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-16 18:03:37] 2025-05-16 22:03:21,677 | INFO     | log transfer has been attempted: DONE
[2025-05-16 18:03:37] 2025-05-16 22:03:21,677 | INFO     | job 6651909591 has finished - writing final server update
[2025-05-16 18:03:37] 2025-05-16 22:03:21,678 | INFO     | total number of processed events: 400 (read)
[2025-05-16 18:03:37] 2025-05-16 22:03:21,679 | INFO     | executing command: lscpu
[2025-05-16 18:03:37] 2025-05-16 22:03:21,708 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-16 18:03:37] 2025-05-16 22:03:21,925 | INFO     | PID=8487 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-05-16 18:03:37] 2025-05-16 22:03:22,765 | INFO     | monitor loop #435: job 0:6651909591 is in state 'finished'
[2025-05-16 18:03:37] 2025-05-16 22:03:22,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-16 18:03:37] 2025-05-16 22:03:25,268 | INFO     | monitor loop #436: job 0:6651909591 is in state 'finished'
[2025-05-16 18:03:37] 2025-05-16 22:03:25,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,340 | INFO     | CPU arch script returned: x86-64-v2
[2025-05-16 18:03:37] 2025-05-16 22:03:26,341 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6651909591/memory_monitor_summary.json (trf name=prmon)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,341 | INFO     | extracted standard info from prmon json
[2025-05-16 18:03:37] 2025-05-16 22:03:26,342 | INFO     | extracted standard memory fields from prmon json
[2025-05-16 18:03:37] 2025-05-16 22:03:26,342 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-16 18:03:37] 2025-05-16 22:03:26,342 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-16 18:03:37] 2025-05-16 22:03:26,342 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-16 18:03:37] 2025-05-16 22:03:26,345 | INFO     | fitting pss+swap vs Time
[2025-05-16 18:03:37] 2025-05-16 22:03:26,346 | INFO     | sum of square deviations: 218571540.0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,346 | INFO     | sum of deviations: 18975025878.0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,346 | INFO     | mean x: 1747430182.0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,346 | INFO     | mean y: 2695814.1685393257
[2025-05-16 18:03:37] 2025-05-16 22:03:26,347 | INFO     | -- intersect: -151698357870.35165
[2025-05-16 18:03:37] 2025-05-16 22:03:26,347 | INFO     | intersect: -151698357870.35165
[2025-05-16 18:03:37] 2025-05-16 22:03:26,347 | INFO     | chi2: 2.4773464244857735
[2025-05-16 18:03:37] 2025-05-16 22:03:26,347 | INFO     | -- intersect: -151698357870.35165
[2025-05-16 18:03:37] 2025-05-16 22:03:26,347 | INFO     | current memory leak: 86.81 B/s (using 89 data points, chi2=2.48)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,348 | INFO     | ..............................
[2025-05-16 18:03:37] 2025-05-16 22:03:26,348 | INFO     | . Timing measurements:
[2025-05-16 18:03:37] 2025-05-16 22:03:26,348 | INFO     | . get job = 0 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,348 | INFO     | . initial setup = 2 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,348 | INFO     | . payload setup = 7 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,349 | INFO     | . stage-in = 0 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,349 | INFO     | . payload execution = 5805 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,349 | INFO     | . stage-out = 0 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,349 | INFO     | . log creation = 0 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,349 | INFO     | ..............................
[2025-05-16 18:03:37] 2025-05-16 22:03:26,434 | INFO     | 
[2025-05-16 18:03:37] 2025-05-16 22:03:26,434 | INFO     | job summary report
[2025-05-16 18:03:37] 2025-05-16 22:03:26,434 | INFO     | --------------------------------------------------
[2025-05-16 18:03:37] 2025-05-16 22:03:26,434 | INFO     | PanDA job id: 6651909591
[2025-05-16 18:03:37] 2025-05-16 22:03:26,434 | INFO     | task id: 44638099
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | errors: (none)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | pilot state: finished 
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | transexitcode: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | exeerrorcode: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,435 | INFO     | exeerrordiag: 
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | exitcode: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | exitmsg: OK
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | cpuconsumptiontime: 57254 s
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | nevents: 400
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | neventsw: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | pid: 14964
[2025-05-16 18:03:37] 2025-05-16 22:03:26,436 | INFO     | pgrp: 14964
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | corecount: 12
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | event service: False
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | sizes: {0: 2392832, 1: 2393688, 6: 2393894, 12: 2393922, 5816: 2420416, 5817: 2420415, 5818: 2429540, 5822: 2429596, 5827: 2429766}
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | --------------------------------------------------
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | 
[2025-05-16 18:03:37] 2025-05-16 22:03:26,437 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-16 18:03:37] 2025-05-16 22:03:26,462 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,463 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,465 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-16 18:03:37] 2025-05-16 22:03:26,466 | INFO     | job 6651909591 has completed (purged errors)
[2025-05-16 18:03:37] 2025-05-16 22:03:26,466 | INFO     | overall cleanup function is called
[2025-05-16 18:03:37] 2025-05-16 22:03:27,474 | INFO     | --- collectZombieJob: --- 10, [14964]
[2025-05-16 18:03:37] 2025-05-16 22:03:27,474 | INFO     | zombie collector waiting for pid 14964
[2025-05-16 18:03:37] 2025-05-16 22:03:27,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-16 18:03:37] 2025-05-16 22:03:27,474 | INFO     | collected zombie processes
[2025-05-16 18:03:37] 2025-05-16 22:03:27,474 | INFO     | will attempt to kill all subprocesses of pid=14964
[2025-05-16 18:03:37] 2025-05-16 22:03:27,567 | INFO     | process IDs to be killed: [14964] (in reverse order)
[2025-05-16 18:03:37] 2025-05-16 22:03:27,619 | WARNING  | found no corresponding commands to process id(s)
[2025-05-16 18:03:37] 2025-05-16 22:03:27,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-16 18:03:37] 2025-05-16 22:03:27,623 | INFO     | did not find any defunct processes belonging to 14964
[2025-05-16 18:03:37] 2025-05-16 22:03:27,626 | INFO     | did not find any defunct processes belonging to 14964
[2025-05-16 18:03:37] 2025-05-16 22:03:27,626 | INFO     | ready for new job
[2025-05-16 18:03:37] 2025-05-16 22:03:27,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-16 18:03:37] 2025-05-16 22:03:27,627 | INFO     | **************************************
[2025-05-16 18:03:37] 2025-05-16 22:03:27,628 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-16 18:03:37] 2025-05-16 22:03:27,628 | INFO     | **************************************
[2025-05-16 18:03:37] 2025-05-16 22:03:27,628 | INFO     | 
[2025-05-16 18:03:37] 2025-05-16 22:03:27,628 | INFO     | architecture information:
[2025-05-16 18:03:37] 2025-05-16 22:03:27,629 | INFO     | executing command: cat /etc/os-release
[2025-05-16 18:03:37] 2025-05-16 22:03:27,643 | INFO     | cat /etc/os-release:
[2025-05-16 18:03:37] NAME="CentOS Linux"
[2025-05-16 18:03:37] VERSION="7 (Core)"
[2025-05-16 18:03:37] ID="centos"
[2025-05-16 18:03:37] ID_LIKE="rhel fedora"
[2025-05-16 18:03:37] VERSION_ID="7"
[2025-05-16 18:03:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-16 18:03:37] ANSI_COLOR="0;31"
[2025-05-16 18:03:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-16 18:03:37] HOME_URL="https://www.centos.org/"
[2025-05-16 18:03:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-16 18:03:37] 
[2025-05-16 18:03:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-16 18:03:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-16 18:03:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-16 18:03:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-16 18:03:37] 
[2025-05-16 18:03:37] 2025-05-16 22:03:27,644 | INFO     | **************************************
[2025-05-16 18:03:37] 2025-05-16 22:03:28,147 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-16 18:03:37] 2025-05-16 22:03:28,164 | INFO     | sufficient remaining disk space (29393682432 B)
[2025-05-16 18:03:37] 2025-05-16 22:03:28,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-16 18:03:37] 2025-05-16 22:03:28,164 | INFO     | current server update state: UPDATING_FINAL
[2025-05-16 18:03:37] 2025-05-16 22:03:28,165 | INFO     | update_server=False
[2025-05-16 18:03:37] 2025-05-16 22:03:28,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-16 18:03:37] 2025-05-16 22:03:28,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-16 18:03:37] 2025-05-16 22:03:28,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-16 18:03:37] 2025-05-16 22:03:28,166 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-16 18:03:37] 2025-05-16 22:03:28,166 | INFO     | found 0 job(s) in 20 queues
[2025-05-16 18:03:37] 2025-05-16 22:03:28,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-16 18:03:37] 2025-05-16 22:03:28,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-16 18:03:37] 2025-05-16 22:03:28,296 | INFO     | all data control threads have been joined
[2025-05-16 18:03:37] 2025-05-16 22:03:28,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-16 18:03:37] 2025-05-16 22:03:28,794 | INFO     | aborting loop
[2025-05-16 18:03:37] 2025-05-16 22:03:28,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-16 18:03:37] 2025-05-16 22:03:29,169 | INFO     | [job] queue monitor thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,170 | INFO     | [job] retrieve thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,243 | INFO     | [payload] failed_post thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,303 | INFO     | [data] control thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,361 | INFO     | all payload control threads have been joined
[2025-05-16 18:03:37] 2025-05-16 22:03:29,372 | INFO     | [payload] validate_pre thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,377 | INFO     | [payload] execute_payloads thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,667 | INFO     | [data] copytool_in thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,799 | INFO     | [job] job monitor thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:29,822 | INFO     | all job control threads have been joined
[2025-05-16 18:03:37] 2025-05-16 22:03:30,061 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,257 | INFO     | [payload] validate_post thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,317 | INFO     | [job] create_data_payload thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,363 | INFO     | [payload] control thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,372 | INFO     | [job] validate thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,827 | INFO     | [job] control thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:30,828 | INFO     | [data] copytool_out thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:32,172 | INFO     | [data] queue_monitor thread has finished
[2025-05-16 18:03:37] 2025-05-16 22:03:32,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520474228544)>', '<ExcThread(monitor, started 140520005277440)>']
[2025-05-16 18:03:37] 2025-05-16 22:03:33,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-16 18:03:37] 2025-05-16 22:03:33,192 | INFO     | [monitor] control thread has ended
[2025-05-16 18:03:37] 2025-05-16 22:03:37,377 | INFO     | all workflow threads have been joined
[2025-05-16 18:03:37] 2025-05-16 22:03:37,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-16 18:03:37] 2025-05-16 22:03:37,378 | INFO     | traces error code: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:37,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-16 18:03:37] 2025-05-16 22:03:37,476 [wrapper] ==== pilot stdout END ====
[2025-05-16 18:03:37] 2025-05-16 22:03:37,480 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-16 18:03:37] 2025-05-16 22:03:37,484 [wrapper] pilotpid: 8487
[2025-05-16 18:03:37] 2025-05-16 22:03:37,487 [wrapper] Pilot exit status: 0
[2025-05-16 18:03:37] 2025-05-16 22:03:37,502 [wrapper] pandaids: 6651909591
[2025-05-16 18:03:37] 2025-05-16 22:03:37,538 [wrapper] cleanup supervisor_pilot 24183 8488
[2025-05-16 18:03:37] 2025-05-16 22:03:37,542 [wrapper] Test setup, not cleaning
[2025-05-16 18:03:37] 2025-05-16 22:03:37,546 [wrapper] apfmon messages muted
[2025-05-16 18:03:37] 2025-05-16 22:03:37,550 [wrapper] ==== wrapper stdout END ====
[2025-05-16 18:03:37] 2025-05-16 22:03:37,554 [wrapper] ==== wrapper stderr END ====
[2025-05-16 18:03:37]  *** Error codes and diagnostics ***
[2025-05-16 18:03:37]     "exeErrorCode": 0,
[2025-05-16 18:03:37]     "exeErrorDiag": "",
[2025-05-16 18:03:37]     "pilotErrorCode": 0,
[2025-05-16 18:03:37]     "pilotErrorDiag": "",
[2025-05-16 18:03:37]  *** Listing of results directory ***
[2025-05-16 18:03:37] total 413444
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas    495897 May 16 12:33 pilot3.tar.gz
[2025-05-16 18:03:37] -rwx------ 1 boincer umatlas     37140 May 16 12:38 runpilot2-wrapper.sh
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas      5111 May 16 12:38 queuedata.json
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas       100 May 16 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-16 18:03:37] -rwxr-xr-x 1 boincer umatlas      7986 May 16 16:25 run_atlas
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas       105 May 16 16:25 job.xml
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas 222280423 May 16 16:25 EVNT.44638096._000998.pool.root.1
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas     17569 May 16 16:25 start_atlas.sh
[2025-05-16 18:03:37] drwxrwx--x 2 boincer umatlas      4096 May 16 16:25 shared
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas    508868 May 16 16:25 input.tar.gz
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas         0 May 16 16:25 boinc_lockfile
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas      2538 May 16 16:25 pandaJob.out
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas       424 May 16 16:25 setup.sh.local
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas    994643 May 16 16:26 agis_schedconf.cvmfs.json
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas   1596741 May 16 16:26 agis_ddmendpoints.agis.ALL.json
[2025-05-16 18:03:37] drwx------ 4 boincer umatlas      4096 May 16 16:26 pilot3
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas 195410433 May 16 18:02 HITS.44638099._042632.pool.root.1
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas      5868 May 16 18:03 init_data.xml
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas       530 May 16 18:03 boinc_task_state.xml
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas      8192 May 16 18:03 boinc_mmap_file
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas        27 May 16 18:03 wrapper_checkpoint.txt
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas      1051 May 16 18:03 memory_monitor_summary.json
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas        95 May 16 18:03 pilot_heartbeat.json
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas    374054 May 16 18:03 log.44638099._042632.job.log.tgz.1
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas      7749 May 16 18:03 heartbeat.json
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas      4476 May 16 18:03 pilotlog.txt
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas    544241 May 16 18:03 log.44638099._042632.job.log.1
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas       357 May 16 18:03 output.list
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas       620 May 16 18:03 runtime_log
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas    942080 May 16 18:03 result.tar.gz
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas     11015 May 16 18:03 runtime_log.err
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas       658 May 16 18:03 2OkLDmTGDa7n9Rq4apOajLDm4fhM0noT9bVof3QYDmaHJKDmsRDHCo.diag
[2025-05-16 18:03:37] -rw-r--r-- 1 boincer umatlas     21537 May 16 18:03 stderr.txt
[2025-05-16 18:03:37] HITS file was successfully produced:
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas 195410433 May 16 18:02 shared/HITS.pool.root.1
[2025-05-16 18:03:37]  *** Contents of shared directory: ***
[2025-05-16 18:03:37] total 409344
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas 222280423 May 16 16:25 ATLAS.root_0
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas     17569 May 16 16:25 start_atlas.sh
[2025-05-16 18:03:37] -rw-r--r-- 2 boincer umatlas    508868 May 16 16:25 input.tar.gz
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas 195410433 May 16 18:02 HITS.pool.root.1
[2025-05-16 18:03:37] -rw------- 1 boincer umatlas    942080 May 16 18:03 result.tar.gz
18:03:39 (4878): run_atlas exited; CPU time 57268.579126
18:03:39 (4878): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN