Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:09:41 (31942): wrapper (7.7.26015): starting
13:09:41 (31942): wrapper: running run_atlas (--nthreads 12)
[2025-05-16 13:09:41] Arguments: --nthreads 12
[2025-05-16 13:09:41] Threads: 12
[2025-05-16 13:09:41] Checking for CVMFS
[2025-05-16 13:09:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-16 13:09:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-16 13:09:42] Running cvmfs_config stat atlas.cern.ch
[2025-05-16 13:09:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-16 13:09:42] 2.11.2.0 2987 8557 81548 146071 3 58 18098373 20275200 1 130560 0 3093148 99.984 1622688 53922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-16 13:09:42] CVMFS is ok
[2025-05-16 13:09:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-16 13:09:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-16 13:09:42] Further information can be found at the LHC@home message board.
[2025-05-16 13:09:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-16 13:09:42] Checking for apptainer binary...
[2025-05-16 13:09:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-16 13:09:42] Running /usr/bin/apptainer --version
[2025-05-16 13:09:42] apptainer version 1.3.2-1.el7
[2025-05-16 13:09:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-16 13:09:43] c-205-19.aglt2.org
[2025-05-16 13:09:43] apptainer works
[2025-05-16 13:09:43] Set ATHENA_PROC_NUMBER=12
[2025-05-16 13:09:43] Set ATHENA_CORE_NUMBER=12
[2025-05-16 13:09:43] Starting ATLAS job with PandaID=6651743423
[2025-05-16 13:09:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-16 14:48:30]  *** The last 200 lines of the pilot log: ***
[2025-05-16 14:48:30]  guid=0a5a5e5c-4e3c-49b1-a311-39fa392ac26d
[2025-05-16 14:48:30]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-16 14:48:30]  is_altstaged=None
[2025-05-16 14:48:30]  is_tar=False
[2025-05-16 14:48:30]  lfn=log.44638099._041175.job.log.tgz.1
[2025-05-16 14:48:30]  mtime=0
[2025-05-16 14:48:30]  protocol_id=None
[2025-05-16 14:48:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-16 14:48:30]  replicas=None
[2025-05-16 14:48:30]  scope=mc23_13p6TeV
[2025-05-16 14:48:30]  status=None
[2025-05-16 14:48:30]  status_code=0
[2025-05-16 14:48:30]  storage_token=
[2025-05-16 14:48:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6651743423/log.44638099._041175.job.log.tgz.1
[2025-05-16 14:48:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/24/log.44638099._041175.job.log.tgz.1
[2025-05-16 14:48:30]  workdir=None
[2025-05-16 14:48:30] ]
[2025-05-16 14:48:30] 2025-05-16 18:48:08,889 | INFO     | transferring file log.44638099._041175.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6651743423/log.44638099._041175.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-05-16 14:48:30] 2025-05-16 18:48:08,890 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6651743423/log.44638099._041175.job.log.tgz.1 /tmp/boinchome/slots/0/log.44638099._041175.job
[2025-05-16 14:48:30] 2025-05-16 18:48:08,912 | INFO     | adding to output.list: log.44638099._041175.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/24/log.44638099._041175.job.log.tg
[2025-05-16 14:48:30] 2025-05-16 18:48:08,913 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-16 14:48:30] 2025-05-16 18:48:08,913 | INFO     | summary of transferred files:
[2025-05-16 14:48:30] 2025-05-16 18:48:08,913 | INFO     |  -- lfn=log.44638099._041175.job.log.tgz.1, status_code=0, status=transferred
[2025-05-16 14:48:30] 2025-05-16 18:48:08,914 | INFO     | stage-out finished correctly
[2025-05-16 14:48:30] 2025-05-16 18:48:09,000 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-16 14:48:30] 2025-05-16 18:48:10,662 | INFO     | job 6651743423 has state=finished
[2025-05-16 14:48:30] 2025-05-16 18:48:10,663 | INFO     | preparing for final server update for job 6651743423 in state='finished'
[2025-05-16 14:48:30] 2025-05-16 18:48:10,725 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-05-16 14:48:30] 2025-05-16 18:48:10,725 | INFO     | this job has now completed (state=finished)
[2025-05-16 14:48:30] 2025-05-16 18:48:10,725 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-16 14:48:30] 2025-05-16 18:48:10,725 | INFO     | log transfer has been attempted: DONE
[2025-05-16 14:48:30] 2025-05-16 18:48:10,725 | INFO     | job 6651743423 has finished - writing final server update
[2025-05-16 14:48:30] 2025-05-16 18:48:10,726 | INFO     | total number of processed events: 400 (read)
[2025-05-16 14:48:30] 2025-05-16 18:48:10,727 | INFO     | executing command: lscpu
[2025-05-16 14:48:30] 2025-05-16 18:48:10,752 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-16 14:48:30] 2025-05-16 18:48:10,856 | INFO     | monitor loop #440: job 0:6651743423 is in state 'finished'
[2025-05-16 14:48:30] 2025-05-16 18:48:10,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-16 14:48:30] 2025-05-16 18:48:13,359 | INFO     | monitor loop #441: job 0:6651743423 is in state 'finished'
[2025-05-16 14:48:30] 2025-05-16 18:48:13,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-16 14:48:30] 2025-05-16 18:48:15,643 | INFO     | CPU arch script returned: x86-64-v2
[2025-05-16 14:48:30] 2025-05-16 18:48:15,643 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6651743423/memory_monitor_summary.json (trf name=prmon)
[2025-05-16 14:48:30] 2025-05-16 18:48:15,644 | INFO     | extracted standard info from prmon json
[2025-05-16 14:48:30] 2025-05-16 18:48:15,644 | INFO     | extracted standard memory fields from prmon json
[2025-05-16 14:48:30] 2025-05-16 18:48:15,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-16 14:48:30] 2025-05-16 18:48:15,645 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-16 14:48:30] 2025-05-16 18:48:15,645 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-16 14:48:30] 2025-05-16 18:48:15,648 | INFO     | fitting pss+swap vs Time
[2025-05-16 14:48:30] 2025-05-16 18:48:15,648 | INFO     | sum of square deviations: 226022842.5
[2025-05-16 14:48:30] 2025-05-16 18:48:15,648 | INFO     | sum of deviations: 32383539639.0
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | mean x: 1747418445.5
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | mean y: 2591948.533333333
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | -- intersect: -250359689446.84827
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | intersect: -250359689446.84827
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | chi2: 2.672550868374962
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | -- intersect: -250359689446.84827
[2025-05-16 14:48:30] 2025-05-16 18:48:15,649 | INFO     | current memory leak: 143.28 B/s (using 90 data points, chi2=2.67)
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | ..............................
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . Timing measurements:
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . get job = 0 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . initial setup = 2 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . payload setup = 7 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . stage-in = 0 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . payload execution = 5864 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . stage-out = 0 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,650 | INFO     | . log creation = 0 s
[2025-05-16 14:48:30] 2025-05-16 18:48:15,651 | INFO     | ..............................
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | 
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | job summary report
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | --------------------------------------------------
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | PanDA job id: 6651743423
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | task id: 44638099
[2025-05-16 14:48:30] 2025-05-16 18:48:16,182 | INFO     | errors: (none)
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | pilot state: finished 
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | transexitcode: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | exeerrorcode: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | exeerrordiag: 
[2025-05-16 14:48:30] 2025-05-16 18:48:16,183 | INFO     | exitcode: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | exitmsg: OK
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | cpuconsumptiontime: 57689 s
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | nevents: 400
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | neventsw: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | pid: 9878
[2025-05-16 14:48:30] 2025-05-16 18:48:16,184 | INFO     | pgrp: 9878
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | corecount: 12
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | event service: False
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | sizes: {0: 2393540, 1: 2393739, 5: 2393945, 11: 2394001, 5875: 2420549, 5876: 2429674, 5883: 2429788}
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | --------------------------------------------------
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | 
[2025-05-16 14:48:30] 2025-05-16 18:48:16,185 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-16 14:48:30] 2025-05-16 18:48:16,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,211 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,211 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,211 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,211 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,211 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,212 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | job 6651743423 has completed (purged errors)
[2025-05-16 14:48:30] 2025-05-16 18:48:16,213 | INFO     | overall cleanup function is called
[2025-05-16 14:48:30] 2025-05-16 18:48:17,222 | INFO     | --- collectZombieJob: --- 10, [9878]
[2025-05-16 14:48:30] 2025-05-16 18:48:17,222 | INFO     | zombie collector waiting for pid 9878
[2025-05-16 14:48:30] 2025-05-16 18:48:17,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-16 14:48:30] 2025-05-16 18:48:17,222 | INFO     | collected zombie processes
[2025-05-16 14:48:30] 2025-05-16 18:48:17,223 | INFO     | will attempt to kill all subprocesses of pid=9878
[2025-05-16 14:48:30] 2025-05-16 18:48:17,313 | INFO     | process IDs to be killed: [9878] (in reverse order)
[2025-05-16 14:48:30] 2025-05-16 18:48:17,364 | WARNING  | found no corresponding commands to process id(s)
[2025-05-16 14:48:30] 2025-05-16 18:48:17,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-16 14:48:30] 2025-05-16 18:48:17,368 | INFO     | did not find any defunct processes belonging to 9878
[2025-05-16 14:48:30] 2025-05-16 18:48:17,370 | INFO     | did not find any defunct processes belonging to 9878
[2025-05-16 14:48:30] 2025-05-16 18:48:17,370 | INFO     | ready for new job
[2025-05-16 14:48:30] 2025-05-16 18:48:17,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-16 14:48:30] 2025-05-16 18:48:17,371 | INFO     | **************************************
[2025-05-16 14:48:30] 2025-05-16 18:48:17,371 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-16 14:48:30] 2025-05-16 18:48:17,371 | INFO     | **************************************
[2025-05-16 14:48:30] 2025-05-16 18:48:17,371 | INFO     | 
[2025-05-16 14:48:30] 2025-05-16 18:48:17,372 | INFO     | architecture information:
[2025-05-16 14:48:30] 2025-05-16 18:48:17,372 | INFO     | executing command: cat /etc/os-release
[2025-05-16 14:48:30] 2025-05-16 18:48:17,388 | INFO     | cat /etc/os-release:
[2025-05-16 14:48:30] NAME="CentOS Linux"
[2025-05-16 14:48:30] VERSION="7 (Core)"
[2025-05-16 14:48:30] ID="centos"
[2025-05-16 14:48:30] ID_LIKE="rhel fedora"
[2025-05-16 14:48:30] VERSION_ID="7"
[2025-05-16 14:48:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-16 14:48:30] ANSI_COLOR="0;31"
[2025-05-16 14:48:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-16 14:48:30] HOME_URL="https://www.centos.org/"
[2025-05-16 14:48:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-16 14:48:30] 
[2025-05-16 14:48:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-16 14:48:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-16 14:48:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-16 14:48:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-16 14:48:30] 
[2025-05-16 14:48:30] 2025-05-16 18:48:17,388 | INFO     | **************************************
[2025-05-16 14:48:30] 2025-05-16 18:48:17,891 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-16 14:48:30] 2025-05-16 18:48:17,907 | INFO     | sufficient remaining disk space (29402071040 B)
[2025-05-16 14:48:30] 2025-05-16 18:48:17,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-16 14:48:30] 2025-05-16 18:48:17,917 | INFO     | current server update state: UPDATING_FINAL
[2025-05-16 14:48:30] 2025-05-16 18:48:17,917 | INFO     | update_server=False
[2025-05-16 14:48:30] 2025-05-16 18:48:17,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-16 14:48:30] 2025-05-16 18:48:17,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-16 14:48:30] 2025-05-16 18:48:18,020 | INFO     | all payload control threads have been joined
[2025-05-16 14:48:30] 2025-05-16 18:48:18,362 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-16 14:48:30] 2025-05-16 18:48:18,362 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-16 14:48:30] 2025-05-16 18:48:18,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-16 14:48:30] 2025-05-16 18:48:18,362 | INFO     | will abort loop
[2025-05-16 14:48:30] 2025-05-16 18:48:18,405 | INFO     | found 0 job(s) in 20 queues
[2025-05-16 14:48:30] 2025-05-16 18:48:18,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-16 14:48:30] 2025-05-16 18:48:18,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-16 14:48:30] 2025-05-16 18:48:18,739 | INFO     | all data control threads have been joined
[2025-05-16 14:48:30] 2025-05-16 18:48:18,793 | INFO     | all job control threads have been joined
[2025-05-16 14:48:30] 2025-05-16 18:48:18,923 | INFO     | [job] retrieve thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,025 | INFO     | [payload] control thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,270 | INFO     | [job] create_data_payload thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,308 | INFO     | [payload] validate_pre thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,368 | INFO     | [job] job monitor thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,372 | INFO     | [payload] failed_post thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,550 | INFO     | [payload] execute_payloads thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-16 14:48:30] 2025-05-16 18:48:19,640 | INFO     | [data] copytool_in thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,744 | INFO     | [data] control thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,799 | INFO     | [job] control thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,924 | INFO     | [data] copytool_out thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:19,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:20,270 | INFO     | [job] validate thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:20,302 | INFO     | [payload] validate_post thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:20,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-16 14:48:30] 2025-05-16 18:48:21,752 | INFO     | [job] queue monitor thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:23,595 | INFO     | [data] queue_monitor thread has finished
[2025-05-16 14:48:30] 2025-05-16 18:48:25,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773545371456)>', '<ExcThread(monitor, started 139772613859072)>']
[2025-05-16 14:48:30] 2025-05-16 18:48:25,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-16 14:48:30] 2025-05-16 18:48:25,441 | INFO     | [monitor] control thread has ended
[2025-05-16 14:48:30] 2025-05-16 18:48:30,300 | INFO     | all workflow threads have been joined
[2025-05-16 14:48:30] 2025-05-16 18:48:30,300 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-16 14:48:30] 2025-05-16 18:48:30,300 | INFO     | traces error code: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:30,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-16 14:48:30] 2025-05-16 18:48:30,387 [wrapper] ==== pilot stdout END ====
[2025-05-16 14:48:30] 2025-05-16 18:48:30,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-16 14:48:30] 2025-05-16 18:48:30,394 [wrapper] pilotpid: 3291
[2025-05-16 14:48:30] 2025-05-16 18:48:30,397 [wrapper] Pilot exit status: 0
[2025-05-16 14:48:30] 2025-05-16 18:48:30,414 [wrapper] pandaids: 6651743423
[2025-05-16 14:48:30] 2025-05-16 18:48:30,452 [wrapper] cleanup supervisor_pilot 29571 3292
[2025-05-16 14:48:30] 2025-05-16 18:48:30,456 [wrapper] Test setup, not cleaning
[2025-05-16 14:48:30] 2025-05-16 18:48:30,460 [wrapper] apfmon messages muted
[2025-05-16 14:48:30] 2025-05-16 18:48:30,464 [wrapper] ==== wrapper stdout END ====
[2025-05-16 14:48:30] 2025-05-16 18:48:30,467 [wrapper] ==== wrapper stderr END ====
[2025-05-16 14:48:30]  *** Error codes and diagnostics ***
[2025-05-16 14:48:30]     "exeErrorCode": 0,
[2025-05-16 14:48:30]     "exeErrorDiag": "",
[2025-05-16 14:48:30]     "pilotErrorCode": 0,
[2025-05-16 14:48:30]     "pilotErrorDiag": "",
[2025-05-16 14:48:30]  *** Listing of results directory ***
[2025-05-16 14:48:30] total 409276
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas    495897 May 16 10:23 pilot3.tar.gz
[2025-05-16 14:48:30] -rwx------ 1 boincer umatlas     37140 May 16 10:32 runpilot2-wrapper.sh
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas      5111 May 16 10:32 queuedata.json
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas       100 May 16 13:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-16 14:48:30] -rwxr-xr-x 1 boincer umatlas      7986 May 16 13:09 run_atlas
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas       105 May 16 13:09 job.xml
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas 218918490 May 16 13:09 EVNT.44638096._000817.pool.root.1
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas     17569 May 16 13:09 start_atlas.sh
[2025-05-16 14:48:30] drwxrwx--x 2 boincer umatlas      4096 May 16 13:09 shared
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas    508873 May 16 13:09 input.tar.gz
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas         0 May 16 13:09 boinc_lockfile
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas      2539 May 16 13:09 pandaJob.out
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas       424 May 16 13:09 setup.sh.local
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas    994651 May 16 13:09 agis_schedconf.cvmfs.json
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas   1596741 May 16 13:09 agis_ddmendpoints.agis.ALL.json
[2025-05-16 14:48:30] drwx------ 4 boincer umatlas      4096 May 16 13:09 pilot3
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas      5868 May 16 14:45 init_data.xml
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas 194511876 May 16 14:47 HITS.44638099._041175.pool.root.1
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas       529 May 16 14:47 boinc_task_state.xml
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas      1047 May 16 14:48 memory_monitor_summary.json
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas    366074 May 16 14:48 log.44638099._041175.job.log.tgz.1
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas        95 May 16 14:48 pilot_heartbeat.json
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas      7750 May 16 14:48 heartbeat.json
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas      8192 May 16 14:48 boinc_mmap_file
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas        27 May 16 14:48 wrapper_checkpoint.txt
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas      4539 May 16 14:48 pilotlog.txt
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas    550857 May 16 14:48 log.44638099._041175.job.log.1
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas       357 May 16 14:48 output.list
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas       620 May 16 14:48 runtime_log
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas    931840 May 16 14:48 result.tar.gz
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas     11015 May 16 14:48 runtime_log.err
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas       658 May 16 14:48 qERMDmqHBa7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqBMKDmrHQHTm.diag
[2025-05-16 14:48:30] -rw-r--r-- 1 boincer umatlas     21237 May 16 14:48 stderr.txt
[2025-05-16 14:48:30] HITS file was successfully produced:
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas 194511876 May 16 14:47 shared/HITS.pool.root.1
[2025-05-16 14:48:30]  *** Contents of shared directory: ***
[2025-05-16 14:48:30] total 405176
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas 218918490 May 16 13:09 ATLAS.root_0
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas     17569 May 16 13:09 start_atlas.sh
[2025-05-16 14:48:30] -rw-r--r-- 2 boincer umatlas    508873 May 16 13:09 input.tar.gz
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas 194511876 May 16 14:47 HITS.pool.root.1
[2025-05-16 14:48:30] -rw------- 1 boincer umatlas    931840 May 16 14:48 result.tar.gz
14:48:32 (31942): run_atlas exited; CPU time 57714.233383
14:48:32 (31942): called boinc_finish(0)

</stderr_txt>
]]>

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