Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:59:39 (1016417): wrapper (7.7.26015): starting
09:59:39 (1016417): wrapper: running run_atlas (--nthreads 3)
[2025-05-17 09:59:39] Arguments: --nthreads 3
[2025-05-17 09:59:39] Threads: 3
[2025-05-17 09:59:39] Checking for CVMFS
[2025-05-17 09:59:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-17 09:59:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-17 09:59:39] Running cvmfs_config stat atlas.cern.ch
[2025-05-17 09:59:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-17 09:59:39] 2.9.2.0 495668 2038 77296 146093 1 56 36237025 36864001 0 130560 0 1331483 99.991 396663 41323 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-17 09:59:39] CVMFS is ok
[2025-05-17 09:59:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 09:59:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 09:59:39] Further information can be found at the LHC@home message board.
[2025-05-17 09:59:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 09:59:39] Checking for apptainer binary...
[2025-05-17 09:59:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-17 09:59:39] Running /usr/bin/apptainer --version
[2025-05-17 09:59:39] apptainer version 1.3.6-6.1
[2025-05-17 09:59:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 09:59:39] thA331b
[2025-05-17 09:59:39] apptainer works
[2025-05-17 09:59:39] Set ATHENA_PROC_NUMBER=3
[2025-05-17 09:59:39] Set ATHENA_CORE_NUMBER=3
[2025-05-17 09:59:40] Starting ATLAS job with PandaID=6651277799
[2025-05-17 09:59:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 11:45:03]  *** The last 200 lines of the pilot log: ***
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | -- intersect: -172902619998.01648
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | intersect: -172902619998.01648
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | chi2: 2.5913971762736887
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | current chi2=2.5913971762736887 (change=0.3181318089923841 %)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | right removable region: 97
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | sum of square deviations: 291817564.5
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | sum of deviations: 11256274306.999996
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | mean x: 1747472067.5
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | mean y: 2324246.224489796
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | -- intersect: -67402888216.92187
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | intersect: -67402888216.92187
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | chi2: 0.8087486940238051
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | current chi2=0.8087486940238051 (change=68.89030309384881 %)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,073 | INFO     | sum of square deviations: 249388862.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | sum of deviations: -1824694951.9999998
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean x: 1747472220.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean y: 2371287.11827957
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | -- intersect: 12788041477.129545
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | intersect: 12788041477.129545
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | chi2: 0.06769447030641787
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | current chi2=0.06769447030641787 (change=91.62972740399562 %)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | sum of square deviations: 211285822.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | sum of deviations: 1306868209.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean x: 1747472372.5
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean y: 2358895.5
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | -- intersect: -10806298628.742474
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | intersect: -10806298628.742474
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | chi2: 0.004887002150526067
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | current chi2=0.004887002150526067 (change=92.78079564194071 %)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | sum of square deviations: 177275882.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | sum of deviations: 743245594.0000001
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean x: 1747472525.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | mean y: 2361413.8554216865
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | -- intersect: -7324079386.717242
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | intersect: -7324079386.717242
[2025-05-17 11:45:03] 2025-05-17 09:44:51,074 | INFO     | chi2: 0.0040515696174244775
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | current chi2=0.0040515696174244775 (change=17.094990085315562 %)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | left removable region: 40
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | sum of square deviations: 57407588.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | sum of deviations: -287380516.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | mean x: 1747472952.0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | mean y: 2369327.6140350876
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | -- intersect: 8750162017.350506
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | intersect: 8750162017.350506
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | chi2: 0.0016527568158594898
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | -- intersect: 8750162017.350506
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | current memory leak: -5.01 B/s (using 57 data points, chi2=0.00)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | ..............................
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . Timing measurements:
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . get job = 0 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . initial setup = 1 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . payload setup = 2 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . stage-in = 0 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . payload execution = 6281 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . stage-out = 0 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | . log creation = 0 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,075 | INFO     | ..............................
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | 
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | job summary report
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | --------------------------------------------------
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | PanDA job id: 6651277799
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | task id: 44638099
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | errors: (none)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | pilot state: finished 
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | transexitcode: 0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | exeerrorcode: 0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | exeerrordiag: 
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | exitcode: 0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,106 | INFO     | exitmsg: OK
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | cpuconsumptiontime: 17014 s
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | nevents: 400
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | neventsw: 0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | pid: 1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | pgrp: 1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | corecount: 3
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | event service: False
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | sizes: {0: 2393714, 2: 2393920, 11: 2393948, 6287: 2420958, 6288: 2429905, 6289: 2429961, 6293: 2430259}
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | --------------------------------------------------
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | 
[2025-05-17 11:45:03] 2025-05-17 09:44:51,107 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,120 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 11:45:03] 2025-05-17 09:44:51,120 | INFO     | job 6651277799 has completed (purged errors)
[2025-05-17 11:45:03] 2025-05-17 09:44:51,120 | INFO     | overall cleanup function is called
[2025-05-17 11:45:03] 2025-05-17 09:44:52,126 | INFO     | --- collectZombieJob: --- 10, [1026519]
[2025-05-17 11:45:03] 2025-05-17 09:44:52,127 | INFO     | zombie collector waiting for pid 1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:52,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 11:45:03] 2025-05-17 09:44:52,127 | INFO     | collected zombie processes
[2025-05-17 11:45:03] 2025-05-17 09:44:52,127 | INFO     | will attempt to kill all subprocesses of pid=1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:52,167 | INFO     | process IDs to be killed: [1026519] (in reverse order)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,191 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 11:45:03] 2025-05-17 09:44:52,192 | INFO     | did not find any defunct processes belonging to 1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:52,194 | INFO     | did not find any defunct processes belonging to 1026519
[2025-05-17 11:45:03] 2025-05-17 09:44:52,194 | INFO     | ready for new job
[2025-05-17 11:45:03] 2025-05-17 09:44:52,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 11:45:03] 2025-05-17 09:44:52,194 | INFO     | **************************************
[2025-05-17 11:45:03] 2025-05-17 09:44:52,194 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 11:45:03] 2025-05-17 09:44:52,195 | INFO     | **************************************
[2025-05-17 11:45:03] 2025-05-17 09:44:52,195 | INFO     | 
[2025-05-17 11:45:03] 2025-05-17 09:44:52,195 | INFO     | architecture information:
[2025-05-17 11:45:03] 2025-05-17 09:44:52,195 | INFO     | executing command: cat /etc/os-release
[2025-05-17 11:45:03] 2025-05-17 09:44:52,204 | INFO     | cat /etc/os-release:
[2025-05-17 11:45:03] NAME="CentOS Linux"
[2025-05-17 11:45:03] VERSION="7 (Core)"
[2025-05-17 11:45:03] ID="centos"
[2025-05-17 11:45:03] ID_LIKE="rhel fedora"
[2025-05-17 11:45:03] VERSION_ID="7"
[2025-05-17 11:45:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 11:45:03] ANSI_COLOR="0;31"
[2025-05-17 11:45:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 11:45:03] HOME_URL="https://www.centos.org/"
[2025-05-17 11:45:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 11:45:03] 
[2025-05-17 11:45:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 11:45:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 11:45:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 11:45:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 11:45:03] 
[2025-05-17 11:45:03] 2025-05-17 09:44:52,204 | INFO     | **************************************
[2025-05-17 11:45:03] 2025-05-17 09:44:52,293 | WARNING  | process 1026519 can no longer be monitored (due to stat problems) - aborting
[2025-05-17 11:45:03] 2025-05-17 09:44:52,320 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,320 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,321 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6651277799/payload.stdout) since it has not been created yet
[2025-05-17 11:45:03] 2025-05-17 09:44:52,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-17 11:45:03] 2025-05-17 09:44:52,331 | INFO     | sufficient remaining disk space (222958714880 B)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,331 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-05-17 11:45:03] 2025-05-17 09:44:52,331 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6651277799/HITS.44638099._036264.pool.root.1 since it does not exist
[2025-05-17 11:45:03] 2025-05-17 09:44:52,368 | INFO     | number of running child processes to parent process 1026519: 1
[2025-05-17 11:45:03] 2025-05-17 09:44:52,368 | INFO     | maximum number of monitored processes: 6
[2025-05-17 11:45:03] 2025-05-17 09:44:52,368 | INFO     | aborting job monitoring since job object (job id=6651277799) has expired
[2025-05-17 11:45:03] 2025-05-17 09:44:52,707 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-17 11:45:03] 2025-05-17 09:44:52,720 | INFO     | sufficient remaining disk space (222958714880 B)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 11:45:03] 2025-05-17 09:44:52,720 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 11:45:03] 2025-05-17 09:44:52,721 | INFO     | update_server=False
[2025-05-17 11:45:03] 2025-05-17 09:44:52,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 11:45:03] 2025-05-17 09:44:52,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:45:03] 2025-05-17 09:44:52,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 11:45:03] 2025-05-17 09:44:52,721 | INFO     | will abort loop
[2025-05-17 11:45:03] 2025-05-17 09:44:52,730 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 11:45:03] 2025-05-17 09:44:52,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 11:45:03] 2025-05-17 09:44:52,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 11:45:03] 2025-05-17 09:44:52,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 11:45:03] 2025-05-17 09:44:53,476 | INFO     | all data control threads have been joined
[2025-05-17 11:45:03] 2025-05-17 09:44:53,679 | INFO     | all job control threads have been joined
[2025-05-17 11:45:03] 2025-05-17 09:44:53,726 | INFO     | [job] retrieve thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:53,727 | INFO     | [job] queue monitor thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:53,727 | INFO     | [job] job monitor thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:53,732 | INFO     | [data] copytool_in thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,049 | INFO     | [payload] failed_post thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 11:45:03] 2025-05-17 09:44:54,175 | INFO     | all payload control threads have been joined
[2025-05-17 11:45:03] 2025-05-17 09:44:54,237 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,316 | INFO     | [job] validate thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,327 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,482 | INFO     | [data] control thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,484 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,685 | INFO     | [job] control thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:54,768 | INFO     | [payload] validate_post thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:55,180 | INFO     | [payload] control thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:56,078 | INFO     | [data] copytool_out thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:56,939 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 11:45:03] 2025-05-17 09:44:58,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311656118080)>', '<ExcThread(monitor, started 140311305103104)>']
[2025-05-17 11:45:03] 2025-05-17 09:44:58,758 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 11:45:03] 2025-05-17 09:44:58,758 | INFO     | [monitor] control thread has ended
[2025-05-17 11:45:03] 2025-05-17 09:45:03,114 | INFO     | all workflow threads have been joined
[2025-05-17 11:45:03] 2025-05-17 09:45:03,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 11:45:03] 2025-05-17 09:45:03,115 | INFO     | traces error code: 0
[2025-05-17 11:45:03] 2025-05-17 09:45:03,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 11:45:03] 2025-05-17 09:45:03,165 [wrapper] ==== pilot stdout END ====
[2025-05-17 11:45:03] 2025-05-17 09:45:03,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 11:45:03] 2025-05-17 09:45:03,169 [wrapper] pilotpid: 1020070
[2025-05-17 11:45:03] 2025-05-17 09:45:03,172 [wrapper] Pilot exit status: 0
[2025-05-17 11:45:03] 2025-05-17 09:45:03,179 [wrapper] pandaids: 6651277799
[2025-05-17 11:45:03] 2025-05-17 09:45:03,194 [wrapper] cleanup supervisor_pilot 1041389 1020071
[2025-05-17 11:45:03] 2025-05-17 09:45:03,197 [wrapper] Test setup, not cleaning
[2025-05-17 11:45:03] 2025-05-17 09:45:03,199 [wrapper] apfmon messages muted
[2025-05-17 11:45:03] 2025-05-17 09:45:03,201 [wrapper] ==== wrapper stdout END ====
[2025-05-17 11:45:03] 2025-05-17 09:45:03,203 [wrapper] ==== wrapper stderr END ====
[2025-05-17 11:45:03]  *** Error codes and diagnostics ***
[2025-05-17 11:45:03]     "exeErrorCode": 0,
[2025-05-17 11:45:03]     "exeErrorDiag": "",
[2025-05-17 11:45:03]     "pilotErrorCode": 0,
[2025-05-17 11:45:03]     "pilotErrorDiag": "",
[2025-05-17 11:45:03]  *** Listing of results directory ***
[2025-05-17 11:45:03] total 410492
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc    495897 May 16 09:05 pilot3.tar.gz
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc      5111 May 16 09:11 queuedata.json
[2025-05-17 11:45:03] -rwx------ 1 boinc boinc     37140 May 16 09:11 runpilot2-wrapper.sh
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc       100 May 17 09:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 11:45:03] -rwxr-xr-x 1 boinc boinc      7986 May 17 09:59 run_atlas
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc       105 May 17 09:59 job.xml
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc 221797322 May 17 09:59 EVNT.44638096._000466.pool.root.1
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc      6923 May 17 09:59 init_data.xml
[2025-05-17 11:45:03] drwxrwx--x 2 boinc boinc      4096 May 17 09:59 shared
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc    508879 May 17 09:59 input.tar.gz
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc     17569 May 17 09:59 start_atlas.sh
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc         0 May 17 09:59 boinc_lockfile
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc      2539 May 17 09:59 pandaJob.out
[2025-05-17 11:45:03] -rw------- 1 boinc boinc       424 May 17 09:59 setup.sh.local
[2025-05-17 11:45:03] -rw------- 1 boinc boinc    994635 May 17 09:59 agis_schedconf.cvmfs.json
[2025-05-17 11:45:03] -rw------- 1 boinc boinc   1596741 May 17 09:59 agis_ddmendpoints.agis.ALL.json
[2025-05-17 11:45:03] drwx------ 4 boinc boinc      4096 May 17 09:59 pilot3
[2025-05-17 11:45:03] -rw------- 1 boinc boinc        95 May 17 11:44 pilot_heartbeat.json
[2025-05-17 11:45:03] -rw------- 1 boinc boinc 193033997 May 17 11:44 HITS.44638099._036264.pool.root.1
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc       529 May 17 11:44 boinc_task_state.xml
[2025-05-17 11:45:03] -rw------- 1 boinc boinc      1021 May 17 11:44 memory_monitor_summary.json
[2025-05-17 11:45:03] -rw------- 1 boinc boinc    230658 May 17 11:44 log.44638099._036264.job.log.tgz.1
[2025-05-17 11:45:03] -rw------- 1 boinc boinc      7656 May 17 11:44 heartbeat.json
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc        27 May 17 11:45 wrapper_checkpoint.txt
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc      8192 May 17 11:45 boinc_mmap_file
[2025-05-17 11:45:03] -rw------- 1 boinc boinc      5652 May 17 11:45 pilotlog.txt
[2025-05-17 11:45:03] -rw------- 1 boinc boinc    603641 May 17 11:45 log.44638099._036264.job.log.1
[2025-05-17 11:45:03] -rw------- 1 boinc boinc       357 May 17 11:45 output.list
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc       620 May 17 11:45 runtime_log
[2025-05-17 11:45:03] -rw------- 1 boinc boinc    849920 May 17 11:45 result.tar.gz
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc     11104 May 17 11:45 runtime_log.err
[2025-05-17 11:45:03] -rw------- 1 boinc boinc       660 May 17 11:45 TQANDmKP4Z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7jIKDm3avTXo.diag
[2025-05-17 11:45:03] -rw-r--r-- 1 boinc boinc     21230 May 17 11:45 stderr.txt
[2025-05-17 11:45:03] HITS file was successfully produced:
[2025-05-17 11:45:03] -rw------- 1 boinc boinc 193033997 May 17 11:44 shared/HITS.pool.root.1
[2025-05-17 11:45:03]  *** Contents of shared directory: ***
[2025-05-17 11:45:03] total 406472
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc 221797322 May 17 09:59 ATLAS.root_0
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc    508879 May 17 09:59 input.tar.gz
[2025-05-17 11:45:03] -rw-r--r-- 2 boinc boinc     17569 May 17 09:59 start_atlas.sh
[2025-05-17 11:45:03] -rw------- 1 boinc boinc 193033997 May 17 11:44 HITS.pool.root.1
[2025-05-17 11:45:03] -rw------- 1 boinc boinc    849920 May 17 11:45 result.tar.gz
11:45:04 (1016417): run_atlas exited; CPU time 17035.621595
11:45:04 (1016417): called boinc_finish(0)

</stderr_txt>
]]>

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