Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-16 16:51:45 (116664): Detected: vboxwrapper 26206
2025-05-16 16:51:45 (116664): Detected: BOINC client v8.0.2
2025-05-16 16:51:45 (116664): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-05-16 16:51:46 (116664): Successfully copied 'init_data.xml' to the shared directory.
2025-05-16 16:51:46 (116664): Create VM. (boinc_162f86738e096352, slot#4)
2025-05-16 16:51:48 (116664): Setting Memory Size for VM. (4400MB)
2025-05-16 16:51:49 (116664): Setting CPU Count for VM. (4)
2025-05-16 16:51:49 (116664): Setting Chipset Options for VM.
2025-05-16 16:51:49 (116664): Setting Graphics Controller Options for VM.
2025-05-16 16:51:50 (116664): Setting Boot Options for VM.
2025-05-16 16:51:50 (116664): Setting Network Configuration for NAT.
2025-05-16 16:51:50 (116664): Enabling VM Network Access.
2025-05-16 16:51:50 (116664): Disabling USB Support for VM.
2025-05-16 16:51:51 (116664): Disabling COM Port Support for VM.
2025-05-16 16:51:51 (116664): Disabling LPT Port Support for VM.
2025-05-16 16:51:51 (116664): Disabling Audio Support for VM.
2025-05-16 16:51:51 (116664): Disabling Clipboard Support for VM.
2025-05-16 16:51:52 (116664): Disabling Drag and Drop Support for VM.
2025-05-16 16:51:52 (116664): Adding storage controller(s) to VM.
2025-05-16 16:51:52 (116664): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-16 16:51:57 (116664): Adding VirtualBox Guest Additions to VM.
2025-05-16 16:51:57 (116664): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-16 16:51:57 (116664): forwarding host port 49718 to guest port 80
2025-05-16 16:51:57 (116664): Enabling remote desktop for VM.
2025-05-16 16:51:58 (116664): Required extension pack not installed, remote desktop not enabled.
2025-05-16 16:51:58 (116664): Enabling shared directory for VM.
2025-05-16 16:51:59 (116664): Starting VM using VBoxManage interface. (boinc_162f86738e096352, slot#4)
2025-05-16 16:52:10 (116664): Successfully started VM. (PID = '180860')
2025-05-16 16:52:10 (116664): Reporting VM Process ID to BOINC.
2025-05-16 16:52:10 (116664): Guest Log: BIOS: VirtualBox 7.1.4
2025-05-16 16:52:10 (116664): Guest Log: CPUID EDX: 0x178bfbff
2025-05-16 16:52:10 (116664): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-16 16:52:10 (116664): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-16 16:52:10 (116664): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-16 16:52:10 (116664): Detected: Web Application Enabled (http://localhost:49718)
2025-05-16 16:52:10 (116664): Preference change detected
2025-05-16 16:52:10 (116664): Setting CPU throttle for VM. (100%)
2025-05-16 16:52:11 (116664): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-16 16:52:12 (116664): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-16 16:52:12 (116664): Guest Log: BIOS: Booting from Hard Disk...
2025-05-16 16:52:16 (116664): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-16 16:52:16 (116664): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-16 16:52:16 (116664): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-16 16:52:27 (116664): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-16 16:52:27 (116664): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-16 16:52:43 (116664): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.000483 main     Log opened 2025-05-16T16:52:41.877608000Z
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.000844 main     OS Product: Linux
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.000977 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.001083 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.001189 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.001193 main     Process ID: 1311
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.001196 main     Package type: LINUX_64BITS_GENERIC
2025-05-16 16:52:43 (116664): Guest Log: 00:00:00.006685 main     5.2.32 r132073 started. Verbose level = 0
2025-05-16 16:52:44 (116664): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-16 16:52:44 (116664): Guest Log: [INFO] Mounting shared directory
2025-05-16 16:52:44 (116664): Guest Log: [INFO] Checking for init_data.xml
2025-05-16 16:52:53 (116664): Guest Log: 00:00:10.013104 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 838 061 000ns (GuestNow=1 747 432 373 726 598 000 ns GuestLast=1 747 414 361 888 537 000 ns fSetTimeLastLoop=true )
2025-05-16 16:52:54 (116664): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-16 16:52:54 (116664): Guest Log: [INFO] Detected branch: prod
2025-05-16 16:52:54 (116664): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-16 16:52:54 (116664): Guest Log: Copying input files
2025-05-16 16:52:58 (116664): Guest Log: Copied input files into RunAtlas.
2025-05-16 16:53:00 (116664): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-16 16:53:00 (116664): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-16 16:53:00 (116664): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-16 16:53:00 (116664): Guest Log: Further information can be found at the LHC@home message board.
2025-05-16 16:53:19 (116664): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-16 16:53:19 (116664): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-16 16:53:19 (116664): Guest Log: 2.6.3.0 1591 0 32216 146078 3 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-16 16:53:31 (116664): Guest Log: copied the webapp to /var/www
2025-05-16 16:53:31 (116664): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-16 16:53:31 (116664): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-16 16:53:38 (116664): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-16 16:53:38 (116664): Guest Log:  *** Starting ATLAS job. (PandaID=6651524133 taskID=44638099) ***
2025-05-16 17:19:02 (116664): Guest Log:  *** Job finished ***
2025-05-16 17:19:02 (116664): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:53,878 | INFO     | [payload] control thread has finished
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:54,402 | INFO     | [data] copytool_out thread has finished
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:55,361 | INFO     | [data] queue_monitor thread has finished
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:55,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714953455424)>', '<ExcThread(monitor, started 140713924749056)>']
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:56,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:18:56,357 | INFO     | [monitor] control thread has ended
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,405 | INFO     | all workflow threads have been joined
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,405 | INFO     | end of generic workflow (traces error code: 0)
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,406 | INFO     | traces error code: 0
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,489 [wrapper] ==== pilot stdout END ====
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,495 [wrapper] ==== wrapper stdout RESUME ====
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,500 [wrapper] pilotpid: 5935
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,505 [wrapper] Pilot exit status: 0
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,683 [wrapper] pandaids: 6651524133
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,733 [wrapper] cleanup supervisor_pilot 19118 5936
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,739 [wrapper] Test setup, not cleaning
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,750 [wrapper] apfmon messages muted
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,755 [wrapper] ==== wrapper stdout END ====
2025-05-16 17:19:02 (116664): Guest Log: 2025-05-16 22:19:00,761 [wrapper] ==== wrapper stderr END ====
2025-05-16 17:19:02 (116664): Guest Log:  *** Error codes and diagnostics ***
2025-05-16 17:19:02 (116664): Guest Log:     "exeErrorCode": 65,
2025-05-16 17:19:02 (116664): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitialize(): standard std::exception is caught\"",
2025-05-16 17:19:02 (116664): Guest Log:     "pilotErrorCode": 1305,
2025-05-16 17:19:02 (116664): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitia",
2025-05-16 17:19:02 (116664): Guest Log:  *** Listing of results directory ***
2025-05-16 17:19:02 (116664): Guest Log: total 4148
2025-05-16 17:19:02 (116664): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May 16 09:10 pilot3.tar.gz
2025-05-16 17:19:02 (116664): Guest Log: -rwx------. 1 atlas atlas   37140 May 16 09:12 runpilot2-wrapper.sh
2025-05-16 17:19:02 (116664): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May 16 09:12 queuedata.json
2025-05-16 17:19:02 (116664): Guest Log: -rwxr-xr-x. 1 atlas atlas    9308 May 16 21:52 init_data.xml
2025-05-16 17:19:02 (116664): Guest Log: -rwxr-xr-x. 1 atlas atlas  508867 May 16 21:52 input.tar.gz
2025-05-16 17:19:02 (116664): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 May 16 21:52 start_atlas.sh
2025-05-16 17:19:02 (116664): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 16 21:52 EVNT.44638096._000679.pool.root.1 -> /data/./ATLAS.root_0
2025-05-16 17:19:02 (116664): Guest Log: -rw-r--r--. 1 atlas atlas    2538 May 16 21:53 pandaJob.out
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas     424 May 16 21:53 setup.sh.local
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas  994643 May 16 21:55 agis_schedconf.cvmfs.json
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas 1596741 May 16 21:55 agis_ddmendpoints.agis.ALL.json
2025-05-16 17:19:02 (116664): Guest Log: drwx------. 4 atlas atlas    4096 May 16 21:55 pilot3
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas    1016 May 16 22:16 memory_monitor_summary.json
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas   55355 May 16 22:16 log.44638099._037830.job.log.tgz.1
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas      95 May 16 22:18 pilot_heartbeat.json
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas   10589 May 16 22:18 heartbeat.json
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas    4536 May 16 22:19 pilotlog.txt
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas  176957 May 16 22:19 log.44638099._037830.job.log.1
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas     188 May 16 22:19 output.list
2025-05-16 17:19:02 (116664): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 16 22:19 runtime_log
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas  256000 May 16 22:19 result.tar.gz
2025-05-16 17:19:02 (116664): Guest Log: -rw-r--r--. 1 atlas atlas   10758 May 16 22:19 runtime_log.err
2025-05-16 17:19:02 (116664): Guest Log: -rw-------. 1 atlas atlas     636 May 16 22:19 a9PKDmoI6Z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUaLKDmCfXkum.diag
2025-05-16 17:19:02 (116664): Guest Log: Looking for outputfile HITS.44638099._037830.pool.root.1
2025-05-16 17:19:02 (116664): Guest Log: No HITS file was produced
2025-05-16 17:19:02 (116664): Guest Log: Successfully finished the ATLAS job!
2025-05-16 17:19:02 (116664): Guest Log: Copying the results back to the shared directory!
2025-05-16 17:19:02 (116664): Guest Log:  *** Contents of shared directory: ***
2025-05-16 17:19:02 (116664): Guest Log: total 216748
2025-05-16 17:19:02 (116664): Guest Log: -rwxrwxrwx. 1 root root 221146551 May 16 21:51 ATLAS.root_0
2025-05-16 17:19:02 (116664): Guest Log: -rwxrwxrwx. 1 root root      9308 May 16 21:51 init_data.xml
2025-05-16 17:19:02 (116664): Guest Log: -rwxrwxrwx. 1 root root    508867 May 16 16:06 input.tar.gz
2025-05-16 17:19:02 (116664): Guest Log: -rwxrwxrwx. 1 root root    256000 May 16 22:19 result.tar.gz
2025-05-16 17:19:02 (116664): Guest Log: -rwxrwxrwx. 1 root root     17569 May 16 16:06 start_atlas.sh
2025-05-16 17:19:02 (116664): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-16 17:19:02 (116664): VM Completion File Detected.
2025-05-16 17:19:02 (116664): Powering off VM.
2025-05-16 17:19:05 (116664): Successfully stopped VM.
2025-05-16 17:19:05 (116664): Deregistering VM. (boinc_162f86738e096352, slot#4)
2025-05-16 17:19:05 (116664): Removing network bandwidth throttle group from VM.
2025-05-16 17:19:05 (116664): Removing VM from VirtualBox.
17:19:11 (116664): called boinc_finish(0)

</stderr_txt>
]]>

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