Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-16 10:40:03 (16332): Detected: vboxwrapper 26206
2025-05-16 10:40:03 (16332): Detected: BOINC client v8.0.2
2025-05-16 10:40:04 (16332): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-16 10:40:04 (16332): Successfully copied 'init_data.xml' to the shared directory.
2025-05-16 10:40:05 (16332): Create VM. (boinc_ae09874440d3ce8b, slot#2)
2025-05-16 10:40:05 (16332): Setting Memory Size for VM. (4800MB)
2025-05-16 10:40:05 (16332): Setting CPU Count for VM. (8)
2025-05-16 10:40:06 (16332): Setting Chipset Options for VM.
2025-05-16 10:40:06 (16332): Setting Graphics Controller Options for VM.
2025-05-16 10:40:06 (16332): Setting Boot Options for VM.
2025-05-16 10:40:06 (16332): Setting Network Configuration for NAT.
2025-05-16 10:40:07 (16332): Enabling VM Network Access.
2025-05-16 10:40:07 (16332): Disabling USB Support for VM.
2025-05-16 10:40:07 (16332): Disabling COM Port Support for VM.
2025-05-16 10:40:07 (16332): Disabling LPT Port Support for VM.
2025-05-16 10:40:08 (16332): Disabling Audio Support for VM.
2025-05-16 10:40:08 (16332): Disabling Clipboard Support for VM.
2025-05-16 10:40:08 (16332): Disabling Drag and Drop Support for VM.
2025-05-16 10:40:08 (16332): Adding storage controller(s) to VM.
2025-05-16 10:40:09 (16332): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-16 10:40:09 (16332): Adding VirtualBox Guest Additions to VM.
2025-05-16 10:40:09 (16332): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-16 10:40:10 (16332): forwarding host port 49901 to guest port 80
2025-05-16 10:40:10 (16332): Enabling remote desktop for VM.
2025-05-16 10:40:10 (16332): Required extension pack not installed, remote desktop not enabled.
2025-05-16 10:40:10 (16332): Enabling shared directory for VM.
2025-05-16 10:40:11 (16332): Starting VM using VBoxManage interface. (boinc_ae09874440d3ce8b, slot#2)
2025-05-16 10:40:16 (16332): Successfully started VM. (PID = '5188')
2025-05-16 10:40:16 (16332): Reporting VM Process ID to BOINC.
2025-05-16 10:40:16 (16332): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-16 10:40:16 (16332): Guest Log: CPUID EDX: 0x178bfbff
2025-05-16 10:40:16 (16332): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-16 10:40:16 (16332): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-16 10:40:16 (16332): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-16 10:40:16 (16332): Detected: Web Application Enabled (http://localhost:49901)
2025-05-16 10:40:16 (16332): Preference change detected
2025-05-16 10:40:16 (16332): Setting CPU throttle for VM. (100%)
2025-05-16 10:40:16 (16332): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-16 10:40:18 (16332): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-16 10:40:18 (16332): Guest Log: BIOS: Booting from Hard Disk...
2025-05-16 10:40:20 (16332): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-16 10:40:20 (16332): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-16 10:40:20 (16332): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-16 10:40:26 (16332): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-16 10:40:26 (16332): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-16 10:40:31 (16332): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000085 main     Log opened 2025-05-16T10:40:28.933824000Z
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000156 main     OS Product: Linux
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000174 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000189 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000203 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000203 main     Process ID: 1374
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000203 main     Package type: LINUX_64BITS_GENERIC
2025-05-16 10:40:31 (16332): Guest Log: 00:00:00.000759 main     5.2.32 r132073 started. Verbose level = 0
2025-05-16 10:40:31 (16332): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-16 10:40:31 (16332): Guest Log: [INFO] Mounting shared directory
2025-05-16 10:40:31 (16332): Guest Log: [INFO] Checking for init_data.xml
2025-05-16 10:40:34 (16332): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-16 10:40:34 (16332): Guest Log: [INFO] Detected branch: prod
2025-05-16 10:40:34 (16332): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-16 10:40:34 (16332): Guest Log: Copying input files
2025-05-16 10:40:35 (16332): Guest Log: Copied input files into RunAtlas.
2025-05-16 10:40:35 (16332): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-16 10:40:35 (16332): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-16 10:40:35 (16332): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-16 10:40:35 (16332): Guest Log: Further information can be found at the LHC@home message board.
2025-05-16 10:40:41 (16332): Guest Log: 00:00:10.009413 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 226 742 000ns (GuestNow=1 747 406 440 162 434 000 ns GuestLast=1 747 392 028 935 692 000 ns fSetTimeLastLoop=true )
2025-05-16 10:40:43 (16332): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-16 10:40:43 (16332): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-16 10:40:43 (16332): Guest Log: 2.6.3.0 1652 0 30132 146068 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-16 10:40:43 (16332): Guest Log: copied the webapp to /var/www
2025-05-16 10:40:43 (16332): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-16 10:40:43 (16332): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-16 10:40:43 (16332): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-16 10:40:43 (16332): Guest Log:  *** Starting ATLAS job. (PandaID=6651458037 taskID=44638099) ***
2025-05-16 12:13:33 (16332): Guest Log:  *** Job finished ***
2025-05-16 12:13:33 (16332): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:19,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:19,959 | INFO     | [data] copytool_out thread has finished
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:23,635 | INFO     | [data] queue_monitor thread has finished
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:24,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599165441856)>', '<ExcThread(monitor, started 140598287783680)>']
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:25,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:25,571 | INFO     | [monitor] control thread has ended
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,791 | INFO     | all workflow threads have been joined
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,791 | INFO     | end of generic workflow (traces error code: 0)
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,791 | INFO     | traces error code: 0
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,881 [wrapper] ==== pilot stdout END ====
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,885 [wrapper] ==== wrapper stdout RESUME ====
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,888 [wrapper] pilotpid: 6013
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:29,892 [wrapper] Pilot exit status: 0
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,075 [wrapper] pandaids: 6651458037
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,104 [wrapper] cleanup supervisor_pilot  2179 6014
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,110 [wrapper] Test setup, not cleaning
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,114 [wrapper] apfmon messages muted
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,118 [wrapper] ==== wrapper stdout END ====
2025-05-16 12:13:33 (16332): Guest Log: 2025-05-16 16:13:30,122 [wrapper] ==== wrapper stderr END ====
2025-05-16 12:13:33 (16332): Guest Log:  *** Error codes and diagnostics ***
2025-05-16 12:13:33 (16332): Guest Log:     "exeErrorCode": 0,
2025-05-16 12:13:33 (16332): Guest Log:     "exeErrorDiag": "",
2025-05-16 12:13:33 (16332): Guest Log:     "pilotErrorCode": 0,
2025-05-16 12:13:33 (16332): Guest Log:     "pilotErrorDiag": "",
2025-05-16 12:13:33 (16332): Guest Log:  *** Listing of results directory ***
2025-05-16 12:13:33 (16332): Guest Log: total 198540
2025-05-16 12:13:33 (16332): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 16 08:28 pilot3.tar.gz
2025-05-16 12:13:33 (16332): Guest Log: -rwx------. 1 atlas atlas     37140 May 16 08:35 runpilot2-wrapper.sh
2025-05-16 12:13:33 (16332): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 16 08:35 queuedata.json
2025-05-16 12:13:33 (16332): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 16 14:40 start_atlas.sh
2025-05-16 12:13:33 (16332): Guest Log: -rwxr-xr-x. 1 atlas atlas    508869 May 16 14:40 input.tar.gz
2025-05-16 12:13:33 (16332): Guest Log: -rwxr-xr-x. 1 atlas atlas      9010 May 16 14:40 init_data.xml
2025-05-16 12:13:33 (16332): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 16 14:40 EVNT.44638096._000509.pool.root.1 -> /data/./ATLAS.root_0
2025-05-16 12:13:33 (16332): Guest Log: -rw-r--r--. 1 atlas atlas      2539 May 16 14:40 pandaJob.out
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas       424 May 16 14:40 setup.sh.local
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas    989428 May 16 14:41 agis_schedconf.cvmfs.json
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas   1596741 May 16 14:41 agis_ddmendpoints.agis.ALL.json
2025-05-16 12:13:33 (16332): Guest Log: drwx------. 4 atlas atlas      4096 May 16 14:41 pilot3
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas        95 May 16 16:12 pilot_heartbeat.json
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas 197953103 May 16 16:12 HITS.44638099._037356.pool.root.1
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas      1026 May 16 16:12 memory_monitor_summary.json
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas    300661 May 16 16:13 log.44638099._037356.job.log.tgz.1
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas      7675 May 16 16:13 heartbeat.json
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas      4536 May 16 16:13 pilotlog.txt
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas    489498 May 16 16:13 log.44638099._037356.job.log.1
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas       357 May 16 16:13 output.list
2025-05-16 12:13:33 (16332): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 16 16:13 runtime_log
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas    808960 May 16 16:13 result.tar.gz
2025-05-16 12:13:33 (16332): Guest Log: -rw-r--r--. 1 atlas atlas     10931 May 16 16:13 runtime_log.err
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas       654 May 16 16:13 lgPKDm8h5Z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMVLKDmkTnvzm.diag
2025-05-16 12:13:33 (16332): Guest Log: Looking for outputfile HITS.44638099._037356.pool.root.1
2025-05-16 12:13:33 (16332): Guest Log: HITS file was successfully produced
2025-05-16 12:13:33 (16332): Guest Log: -rw-------. 1 atlas atlas 197953103 May 16 16:12 /home/atlas/RunAtlas/HITS.44638099._037356.pool.root.1
2025-05-16 12:13:34 (16332): Guest Log: Successfully finished the ATLAS job!
2025-05-16 12:13:34 (16332): Guest Log: Copying the results back to the shared directory!
2025-05-16 12:13:34 (16332): Guest Log:  *** Contents of shared directory: ***
2025-05-16 12:13:34 (16332): Guest Log: total 412908
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root 223503441 May 16 14:40 ATLAS.root_0
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root 197953103 May 16  2025 HITS.pool.root.1
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root      9010 May 16 14:40 init_data.xml
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root    508869 May 16 14:39 input.tar.gz
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root    808960 May 16  2025 result.tar.gz
2025-05-16 12:13:34 (16332): Guest Log: -rwxrwxrwx. 1 root root     17569 May 16 14:39 start_atlas.sh
2025-05-16 12:13:34 (16332): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-16 12:13:34 (16332): VM Completion File Detected.
2025-05-16 12:13:34 (16332): Powering off VM.
2025-05-16 12:13:34 (16332): Successfully stopped VM.
2025-05-16 12:13:34 (16332): Deregistering VM. (boinc_ae09874440d3ce8b, slot#2)
2025-05-16 12:13:34 (16332): Removing network bandwidth throttle group from VM.
2025-05-16 12:13:35 (16332): Removing VM from VirtualBox.
12:13:40 (16332): called boinc_finish(0)

</stderr_txt>
]]>

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