Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-16 19:55:55 (1150669): Detected: vboxwrapper 26206
2025-05-16 19:55:55 (1150669): Detected: BOINC client v7.24.1
2025-05-16 19:55:55 (1150669): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-05-16 19:55:55 (1150669): Successfully copied 'init_data.xml' to the shared directory.
2025-05-16 19:55:56 (1150669): Create VM. (boinc_e17debaa6719356b, slot#0)
2025-05-16 19:55:56 (1150669): Setting Memory Size for VM. (4600MB)
2025-05-16 19:55:56 (1150669): Setting CPU Count for VM. (6)
2025-05-16 19:55:56 (1150669): Setting Chipset Options for VM.
2025-05-16 19:55:56 (1150669): Setting Graphics Controller Options for VM.
2025-05-16 19:55:57 (1150669): Setting Boot Options for VM.
2025-05-16 19:55:57 (1150669): Setting Network Configuration for NAT.
2025-05-16 19:55:57 (1150669): Enabling VM Network Access.
2025-05-16 19:55:57 (1150669): Disabling USB Support for VM.
2025-05-16 19:55:57 (1150669): Disabling COM Port Support for VM.
2025-05-16 19:55:57 (1150669): Disabling LPT Port Support for VM.
2025-05-16 19:55:57 (1150669): Disabling Audio Support for VM.
2025-05-16 19:55:58 (1150669): Disabling Clipboard Support for VM.
2025-05-16 19:55:58 (1150669): Disabling Drag and Drop Support for VM.
2025-05-16 19:55:58 (1150669): Adding storage controller(s) to VM.
2025-05-16 19:55:58 (1150669): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-16 19:56:00 (1150669): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-16 19:56:00 (1150669): forwarding host port 51701 to guest port 80
2025-05-16 19:56:00 (1150669): Enabling remote desktop for VM.
2025-05-16 19:56:01 (1150669): Enabling shared directory for VM.
2025-05-16 19:56:01 (1150669): Starting VM using VBoxManage interface. (boinc_e17debaa6719356b, slot#0)
2025-05-16 19:56:02 (1150669): Successfully started VM. (PID = '1151146')
2025-05-16 19:56:02 (1150669): Reporting VM Process ID to BOINC.
2025-05-16 19:56:02 (1150669): Guest Log: BIOS: VirtualBox 7.0.16
2025-05-16 19:56:02 (1150669): Guest Log: CPUID EDX: 0x178bfbff
2025-05-16 19:56:02 (1150669): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-16 19:56:02 (1150669): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-16 19:56:02 (1150669): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-16 19:56:02 (1150669): Detected: Web Application Enabled (http://localhost:51701)
2025-05-16 19:56:02 (1150669): Detected: Remote Desktop Enabled (localhost:36621)
2025-05-16 19:56:02 (1150669): Preference change detected
2025-05-16 19:56:02 (1150669): Setting CPU throttle for VM. (50%)
2025-05-16 19:56:02 (1150669): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-16 19:56:04 (1150669): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-16 19:56:04 (1150669): Guest Log: BIOS: Booting from Hard Disk...
2025-05-16 19:56:08 (1150669): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-16 19:56:08 (1150669): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-16 19:56:08 (1150669): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-16 19:56:29 (1150669): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-16 19:56:29 (1150669): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-16 19:56:50 (1150669): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.000289 main     Log opened 2025-05-16T10:56:48.790687000Z
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001418 main     OS Product: Linux
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001496 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001567 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001645 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001647 main     Process ID: 1328
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.001649 main     Package type: LINUX_64BITS_GENERIC
2025-05-16 19:56:50 (1150669): Guest Log: 00:00:00.005997 main     5.2.32 r132073 started. Verbose level = 0
2025-05-16 19:56:51 (1150669): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-16 19:56:51 (1150669): Guest Log: [INFO] Mounting shared directory
2025-05-16 19:56:51 (1150669): Guest Log: [INFO] Checking for init_data.xml
2025-05-16 19:57:03 (1150669): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-16 19:57:03 (1150669): Guest Log: [INFO] Detected branch: prod
2025-05-16 19:57:04 (1150669): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-16 19:57:04 (1150669): Guest Log: Copying input files
2025-05-16 19:57:05 (1150669): Guest Log: Copied input files into RunAtlas.
2025-05-16 19:57:05 (1150669): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-16 19:57:05 (1150669): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-16 19:57:05 (1150669): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-16 19:57:05 (1150669): Guest Log: Further information can be found at the LHC@home message board.
2025-05-16 19:57:14 (1150669): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-16 19:57:14 (1150669): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-16 19:57:14 (1150669): Guest Log: 2.6.3.0 1607 0 30160 146061 3 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-16 19:57:18 (1150669): Guest Log: copied the webapp to /var/www
2025-05-16 19:57:19 (1150669): Guest Log: ATHENA_PROC_NUMBER=6
2025-05-16 19:57:19 (1150669): Guest Log: ATHENA_CORE_NUMBER=6
2025-05-16 19:57:19 (1150669): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-16 19:57:19 (1150669): Guest Log:  *** Starting ATLAS job. (PandaID=6651346575 taskID=44638099) ***
2025-05-16 20:03:37 (1150669): Guest Log:  *** Job finished ***
2025-05-16 20:03:37 (1150669): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:27,299 | INFO     | [payload] control thread has finished
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:27,471 | INFO     | [job] control thread has finished
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:28,659 | INFO     | [data] queue_monitor thread has finished
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:30,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039743231808)>', '<ExcThread(monitor, started 140038474032896)>']
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:30,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:30,686 | INFO     | [monitor] control thread has ended
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,135 | INFO     | all workflow threads have been joined
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,136 | INFO     | end of generic workflow (traces error code: 0)
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,136 | INFO     | traces error code: 0
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,203 [wrapper] ==== pilot stdout END ====
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,207 [wrapper] ==== wrapper stdout RESUME ====
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,212 [wrapper] pilotpid: 5958
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,216 [wrapper] Pilot exit status: 0
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,288 [wrapper] pandaids: 6651346575
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,322 [wrapper] cleanup supervisor_pilot  5964 5959
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,328 [wrapper] Test setup, not cleaning
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,333 [wrapper] apfmon messages muted
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,339 [wrapper] ==== wrapper stdout END ====
2025-05-16 20:03:37 (1150669): Guest Log: 2025-05-16 11:03:35,344 [wrapper] ==== wrapper stderr END ====
2025-05-16 20:03:37 (1150669): Guest Log:  *** Error codes and diagnostics ***
2025-05-16 20:03:37 (1150669): Guest Log:     "exeErrorCode": 65,
2025-05-16 20:03:37 (1150669): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-05-16 20:03:37 (1150669): Guest Log:     "pilotErrorCode": 1305,
2025-05-16 20:03:37 (1150669): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-05-16 20:03:37 (1150669): Guest Log:  *** Listing of results directory ***
2025-05-16 20:03:37 (1150669): Guest Log: total 3884
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May 16 07:35 pilot3.tar.gz
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May 16 07:50 queuedata.json
2025-05-16 20:03:37 (1150669): Guest Log: -rwx------. 1 atlas atlas   37140 May 16 07:50 runpilot2-wrapper.sh
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas   17569 May 16 10:57 start_atlas.sh
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas    6685 May 16 10:57 init_data.xml
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas  508878 May 16 10:57 input.tar.gz
2025-05-16 20:03:37 (1150669): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 16 10:57 EVNT.44638096._000489.pool.root.1 -> /data/./ATLAS.root_0
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas    2538 May 16 10:57 pandaJob.out
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas     424 May 16 10:57 setup.sh.local
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas  989800 May 16 10:58 agis_schedconf.cvmfs.json
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas 1596741 May 16 10:58 agis_ddmendpoints.agis.ALL.json
2025-05-16 20:03:37 (1150669): Guest Log: drwx------. 4 atlas atlas    4096 May 16 10:58 pilot3
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas    1009 May 16 11:01 memory_monitor_summary.json
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas   21248 May 16 11:01 log.44638099._036816.job.log.tgz.1
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas      95 May 16 11:03 pilot_heartbeat.json
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas    8399 May 16 11:03 heartbeat.json
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas    4536 May 16 11:03 pilotlog.txt
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas   83411 May 16 11:03 log.44638099._036816.job.log.1
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas     188 May 16 11:03 output.list
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 16 11:03 runtime_log
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas  122880 May 16 11:03 result.tar.gz
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 atlas atlas   10773 May 16 11:03 runtime_log.err
2025-05-16 20:03:37 (1150669): Guest Log: -rw-------. 1 atlas atlas     637 May 16 11:03 KGMODmL14Z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyOLKDmWWtQOo.diag
2025-05-16 20:03:37 (1150669): Guest Log: Looking for outputfile HITS.44638099._036816.pool.root.1
2025-05-16 20:03:37 (1150669): Guest Log: No HITS file was produced
2025-05-16 20:03:37 (1150669): Guest Log: Successfully finished the ATLAS job!
2025-05-16 20:03:37 (1150669): Guest Log: Copying the results back to the shared directory!
2025-05-16 20:03:37 (1150669): Guest Log:  *** Contents of shared directory: ***
2025-05-16 20:03:37 (1150669): Guest Log: total 214652
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 root root 219132194 May 16 10:55 ATLAS.root_0
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 root root      6685 May 16 10:55 init_data.xml
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 root root    508878 May 16 10:55 input.tar.gz
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 root root    122880 May 16  2025 result.tar.gz
2025-05-16 20:03:37 (1150669): Guest Log: -rw-r--r--. 1 root root     17569 May 16 10:55 start_atlas.sh
2025-05-16 20:03:37 (1150669): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-16 20:03:37 (1150669): VM Completion File Detected.
2025-05-16 20:03:37 (1150669): Powering off VM.
2025-05-16 20:03:37 (1150669): Successfully stopped VM.
2025-05-16 20:03:37 (1150669): Deregistering VM. (boinc_e17debaa6719356b, slot#0)
2025-05-16 20:03:37 (1150669): Removing network bandwidth throttle group from VM.
2025-05-16 20:03:37 (1150669): Removing VM from VirtualBox.
20:03:43 (1150669): called boinc_finish(0)

</stderr_txt>
]]>

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