Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:21:17 (30365): wrapper (7.7.26015): starting
23:21:17 (30365): wrapper: running run_atlas (--nthreads 8)
[2025-05-16 23:21:17] Arguments: --nthreads 8
[2025-05-16 23:21:17] Threads: 8
[2025-05-16 23:21:17] Checking for CVMFS
[2025-05-16 23:21:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-16 23:21:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-16 23:21:18] Running cvmfs_config stat atlas.cern.ch
[2025-05-16 23:21:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-16 23:21:18] 2.11.2.0 19741 6369 89444 146077 0 114 16246588 25165825 4405 130560 0 5198780 99.758 6892941 1154 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-16 23:21:18] CVMFS is ok
[2025-05-16 23:21:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-16 23:21:18] Checking for apptainer binary...
[2025-05-16 23:21:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-16 23:21:18] Running /usr/bin/apptainer --version
[2025-05-16 23:21:18] apptainer version 1.3.2-1.el7
[2025-05-16 23:21:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-16 23:21:20] cg-vwn339.simple-grid.lan
[2025-05-16 23:21:20] apptainer works
[2025-05-16 23:21:20] Set ATHENA_PROC_NUMBER=8
[2025-05-16 23:21:20] Set ATHENA_CORE_NUMBER=8
[2025-05-16 23:21:20] Starting ATLAS job with PandaID=6651102628
[2025-05-16 23:21:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/33 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 04:59:56]  *** The last 200 lines of the pilot log: ***
[2025-05-17 04:59:56] 2025-05-17 02:38:05,271 | INFO     | using path: /var/lib/boinc/slots/33/PanDA_Pilot-6651102628/memory_monitor_summary.json (trf name=prmon)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,272 | INFO     | extracted standard info from prmon json
[2025-05-17 04:59:56] 2025-05-17 02:38:05,272 | INFO     | extracted standard memory fields from prmon json
[2025-05-17 04:59:56] 2025-05-17 02:38:05,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-17 04:59:56] 2025-05-17 02:38:05,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-17 04:59:56] 2025-05-17 02:38:05,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-17 04:59:56] 2025-05-17 02:38:05,279 | INFO     | fitting pss+swap vs Time
[2025-05-17 04:59:56] 2025-05-17 02:38:05,280 | INFO     | sum of square deviations: 9148487810.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,283 | INFO     | sum of deviations: 91661471636.00003
[2025-05-17 04:59:56] 2025-05-17 02:38:05,283 | INFO     | mean x: 1747439956.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,283 | INFO     | mean y: 2468435.1877022656
[2025-05-17 04:59:56] 2025-05-17 02:38:05,283 | INFO     | -- intersect: -17505662010.96383
[2025-05-17 04:59:56] 2025-05-17 02:38:05,283 | INFO     | intersect: -17505662010.96383
[2025-05-17 04:59:56] 2025-05-17 02:38:05,284 | INFO     | chi2: 5.348271250656953
[2025-05-17 04:59:56] 2025-05-17 02:38:05,284 | INFO     | sum of square deviations: 8711530780.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,294 | INFO     | sum of deviations: 111534418398.5
[2025-05-17 04:59:56] 2025-05-17 02:38:05,294 | INFO     | mean x: 1747439803.5
[2025-05-17 04:59:56] 2025-05-17 02:38:05,295 | INFO     | mean y: 2475272.7927631577
[2025-05-17 04:59:56] 2025-05-17 02:38:05,295 | INFO     | -- intersect: -22370134902.357376
[2025-05-17 04:59:56] 2025-05-17 02:38:05,295 | INFO     | intersect: -22370134902.357376
[2025-05-17 04:59:56] 2025-05-17 02:38:05,295 | INFO     | chi2: 4.535009165635833
[2025-05-17 04:59:56] 2025-05-17 02:38:05,295 | INFO     | current chi2=4.535009165635833 (change=15.206074017304635 %)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,296 | INFO     | right removable region: 303
[2025-05-17 04:59:56] 2025-05-17 02:38:05,296 | INFO     | sum of square deviations: 8711530780.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,299 | INFO     | sum of deviations: 12551739877.500008
[2025-05-17 04:59:56] 2025-05-17 02:38:05,299 | INFO     | mean x: 1747440108.5
[2025-05-17 04:59:56] 2025-05-17 02:38:05,299 | INFO     | mean y: 2495984.3717105263
[2025-05-17 04:59:56] 2025-05-17 02:38:05,299 | INFO     | -- intersect: -2515249087.913093
[2025-05-17 04:59:56] 2025-05-17 02:38:05,300 | INFO     | intersect: -2515249087.913093
[2025-05-17 04:59:56] 2025-05-17 02:38:05,300 | INFO     | chi2: 2.690887286623102
[2025-05-17 04:59:56] 2025-05-17 02:38:05,300 | INFO     | current chi2=2.690887286623102 (change=49.68678362578248 %)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,301 | INFO     | sum of square deviations: 8288713550.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,304 | INFO     | sum of deviations: -44517476944.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,304 | INFO     | mean x: 1747440261.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,304 | INFO     | mean y: 2516568.3511705687
[2025-05-17 04:59:56] 2025-05-17 02:38:05,304 | INFO     | -- intersect: 9387764479.35961
[2025-05-17 04:59:56] 2025-05-17 02:38:05,304 | INFO     | intersect: 9387764479.35961
[2025-05-17 04:59:56] 2025-05-17 02:38:05,305 | INFO     | chi2: 1.39989874179792
[2025-05-17 04:59:56] 2025-05-17 02:38:05,305 | INFO     | current chi2=1.39989874179792 (change=47.976314401681734 %)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,305 | INFO     | sum of square deviations: 7879803557.5
[2025-05-17 04:59:56] 2025-05-17 02:38:05,308 | INFO     | sum of deviations: -66400523583.499985
[2025-05-17 04:59:56] 2025-05-17 02:38:05,309 | INFO     | mean x: 1747440413.5
[2025-05-17 04:59:56] 2025-05-17 02:38:05,309 | INFO     | mean y: 2524670.214285714
[2025-05-17 04:59:56] 2025-05-17 02:38:05,309 | INFO     | -- intersect: 14727632668.234034
[2025-05-17 04:59:56] 2025-05-17 02:38:05,309 | INFO     | intersect: 14727632668.234034
[2025-05-17 04:59:56] 2025-05-17 02:38:05,309 | INFO     | chi2: 1.0591087864770443
[2025-05-17 04:59:56] 2025-05-17 02:38:05,310 | INFO     | current chi2=1.0591087864770443 (change=24.343900394052206 %)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,310 | INFO     | left removable region: 30
[2025-05-17 04:59:56] 2025-05-17 02:38:05,310 | INFO     | sum of square deviations: 6309000152.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,313 | INFO     | sum of deviations: -17407500948.000004
[2025-05-17 04:59:56] 2025-05-17 02:38:05,313 | INFO     | mean x: 1747440688.0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,313 | INFO     | mean y: 2521426.978021978
[2025-05-17 04:59:56] 2025-05-17 02:38:05,313 | INFO     | -- intersect: 4823978821.188238
[2025-05-17 04:59:56] 2025-05-17 02:38:05,313 | INFO     | intersect: 4823978821.188238
[2025-05-17 04:59:56] 2025-05-17 02:38:05,314 | INFO     | chi2: 0.13312973479612578
[2025-05-17 04:59:56] 2025-05-17 02:38:05,314 | INFO     | -- intersect: 4823978821.188238
[2025-05-17 04:59:56] 2025-05-17 02:38:05,314 | INFO     | current memory leak: -2.76 B/s (using 273 data points, chi2=0.13)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | ..............................
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . Timing measurements:
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . get job = 0 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . initial setup = 2 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . payload setup = 9 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . stage-in = 0 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . payload execution = 18850 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . stage-out = 2 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,315 | INFO     | . log creation = 0 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,316 | INFO     | ..............................
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | 
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | job summary report
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | --------------------------------------------------
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | PanDA job id: 6651102628
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | task id: 44638099
[2025-05-17 04:59:56] 2025-05-17 02:38:05,583 | INFO     | errors: (none)
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | pilot state: finished 
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | transexitcode: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | exeerrorcode: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | exeerrordiag: 
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | exitcode: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | exitmsg: OK
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | cpuconsumptiontime: 69665 s
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | nevents: 400
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | neventsw: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | pid: 10152
[2025-05-17 04:59:56] 2025-05-17 02:38:05,584 | INFO     | pgrp: 10152
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | corecount: 8
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | event service: False
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | sizes: {0: 2393543, 1: 2393742, 12: 2393976, 22: 2393976, 18863: 2425860, 18864: 2425859, 18867: 2434986, 18870: 2435042, 18954: 2435212}
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | --------------------------------------------------
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | 
[2025-05-17 04:59:56] 2025-05-17 02:38:05,585 | INFO     | executing command: ls -lF /var/lib/boinc/slots/33
[2025-05-17 04:59:56] 2025-05-17 02:38:06,174 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | job 6651102628 has completed (purged errors)
[2025-05-17 04:59:56] 2025-05-17 02:38:06,177 | INFO     | overall cleanup function is called
[2025-05-17 04:59:56] 2025-05-17 02:38:07,187 | INFO     | --- collectZombieJob: --- 10, [10152]
[2025-05-17 04:59:56] 2025-05-17 02:38:07,187 | INFO     | zombie collector waiting for pid 10152
[2025-05-17 04:59:56] 2025-05-17 02:38:07,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 04:59:56] 2025-05-17 02:38:07,187 | INFO     | collected zombie processes
[2025-05-17 04:59:56] 2025-05-17 02:38:07,188 | INFO     | will attempt to kill all subprocesses of pid=10152
[2025-05-17 04:59:56] 2025-05-17 02:38:07,283 | INFO     | process IDs to be killed: [10152] (in reverse order)
[2025-05-17 04:59:56] 2025-05-17 02:38:07,934 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 04:59:56] 2025-05-17 02:38:07,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 04:59:56] 2025-05-17 02:38:07,938 | INFO     | did not find any defunct processes belonging to 10152
[2025-05-17 04:59:56] 2025-05-17 02:38:07,940 | INFO     | did not find any defunct processes belonging to 10152
[2025-05-17 04:59:56] 2025-05-17 02:38:07,941 | INFO     | ready for new job
[2025-05-17 04:59:56] 2025-05-17 02:38:07,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 04:59:56] 2025-05-17 02:38:07,943 | INFO     | **************************************
[2025-05-17 04:59:56] 2025-05-17 02:38:07,943 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 04:59:56] 2025-05-17 02:38:07,943 | INFO     | **************************************
[2025-05-17 04:59:56] 2025-05-17 02:38:07,943 | INFO     | 
[2025-05-17 04:59:56] 2025-05-17 02:38:07,944 | INFO     | pilot is running in a VM
[2025-05-17 04:59:56] 2025-05-17 02:38:07,944 | INFO     | architecture information:
[2025-05-17 04:59:56] 2025-05-17 02:38:07,945 | INFO     | executing command: cat /etc/os-release
[2025-05-17 04:59:56] 2025-05-17 02:38:08,267 | INFO     | cat /etc/os-release:
[2025-05-17 04:59:56] NAME="CentOS Linux"
[2025-05-17 04:59:56] VERSION="7 (Core)"
[2025-05-17 04:59:56] ID="centos"
[2025-05-17 04:59:56] ID_LIKE="rhel fedora"
[2025-05-17 04:59:56] VERSION_ID="7"
[2025-05-17 04:59:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 04:59:56] ANSI_COLOR="0;31"
[2025-05-17 04:59:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 04:59:56] HOME_URL="https://www.centos.org/"
[2025-05-17 04:59:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 04:59:56] 
[2025-05-17 04:59:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 04:59:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 04:59:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 04:59:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 04:59:56] 
[2025-05-17 04:59:56] 2025-05-17 02:38:08,267 | INFO     | **************************************
[2025-05-17 04:59:56] 2025-05-17 02:38:08,770 | INFO     | executing command: df -mP /var/lib/boinc/slots/33
[2025-05-17 04:59:56] 2025-05-17 02:38:09,012 | INFO     | sufficient remaining disk space (496971546624 B)
[2025-05-17 04:59:56] 2025-05-17 02:38:09,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 04:59:56] 2025-05-17 02:38:09,012 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 04:59:56] 2025-05-17 02:38:09,012 | INFO     | update_server=False
[2025-05-17 04:59:56] 2025-05-17 02:38:09,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 04:59:56] 2025-05-17 02:38:09,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 04:59:56] 2025-05-17 02:38:09,013 | INFO     | aborting loop
[2025-05-17 04:59:56] 2025-05-17 02:38:09,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 04:59:56] 2025-05-17 02:38:09,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 04:59:56] 2025-05-17 02:38:09,918 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 04:59:56] 2025-05-17 02:38:09,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 04:59:56] 2025-05-17 02:38:09,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 04:59:56] 2025-05-17 02:38:09,941 | INFO     | all data control threads have been joined
[2025-05-17 04:59:56] 2025-05-17 02:38:10,004 | INFO     | all job control threads have been joined
[2025-05-17 04:59:56] 2025-05-17 02:38:10,019 | INFO     | [job] retrieve thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,027 | INFO     | [job] job monitor thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,109 | INFO     | all payload control threads have been joined
[2025-05-17 04:59:56] 2025-05-17 02:38:10,159 | INFO     | [payload] failed_post thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,198 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,382 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,426 | INFO     | [data] copytool_in thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 04:59:56] 2025-05-17 02:38:10,947 | INFO     | [data] control thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:10,975 | INFO     | [payload] validate_post thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,010 | INFO     | [job] control thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,020 | INFO     | [data] copytool_out thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,058 | INFO     | [job] validate thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,076 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,115 | INFO     | [payload] control thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,304 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:11,463 | INFO     | [job] queue monitor thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:13,031 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 04:59:56] 2025-05-17 02:38:14,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261311395648)>', '<ExcThread(monitor, started 140260738590464)>']
[2025-05-17 04:59:56] 2025-05-17 02:38:14,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 04:59:56] 2025-05-17 02:38:14,947 | INFO     | [monitor] control thread has ended
[2025-05-17 04:59:56] 2025-05-17 02:38:19,359 | INFO     | all workflow threads have been joined
[2025-05-17 04:59:56] 2025-05-17 02:38:19,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 04:59:56] 2025-05-17 02:38:19,359 | INFO     | traces error code: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:19,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 04:59:56] 2025-05-17 02:38:19,656 [wrapper] ==== pilot stdout END ====
[2025-05-17 04:59:56] 2025-05-17 02:38:19,762 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 04:59:56] 2025-05-17 02:38:19,858 [wrapper] pilotpid: 1673
[2025-05-17 04:59:56] 2025-05-17 02:38:19,907 [wrapper] Pilot exit status: 0
[2025-05-17 04:59:56] 2025-05-17 02:38:20,232 [wrapper] pandaids: 6651102628
[2025-05-17 04:59:56] 2025-05-17 02:38:20,724 [wrapper] cleanup supervisor_pilot 13486 1674
[2025-05-17 04:59:56] 2025-05-17 02:38:20,761 [wrapper] Test setup, not cleaning
[2025-05-17 04:59:56] 2025-05-17 02:38:20,844 [wrapper] apfmon messages muted
[2025-05-17 04:59:56] 2025-05-17 02:38:20,915 [wrapper] ==== wrapper stdout END ====
[2025-05-17 04:59:56] 2025-05-17 02:38:20,965 [wrapper] ==== wrapper stderr END ====
[2025-05-17 04:59:56]  *** Error codes and diagnostics ***
[2025-05-17 04:59:56]     "exeErrorCode": 0,
[2025-05-17 04:59:56]     "exeErrorDiag": "",
[2025-05-17 04:59:56]     "pilotErrorCode": 0,
[2025-05-17 04:59:56]     "pilotErrorDiag": "",
[2025-05-17 04:59:56]  *** Listing of results directory ***
[2025-05-17 04:59:56] total 411536
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc    495897 May 16 05:50 pilot3.tar.gz
[2025-05-17 04:59:56] -rwx------. 1 boinc boinc     37140 May 16 05:56 runpilot2-wrapper.sh
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc      5111 May 16 05:56 queuedata.json
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc       100 May 16 23:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 04:59:56] -rwxr-xr-x. 1 boinc boinc      7986 May 16 23:21 run_atlas
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc       105 May 16 23:21 job.xml
[2025-05-17 04:59:56] -rw-r--r--. 2 boinc boinc 222931545 May 16 23:21 EVNT.44638096._001822.pool.root.1
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc      6371 May 16 23:21 init_data.xml
[2025-05-17 04:59:56] -rw-r--r--. 2 boinc boinc     17569 May 16 23:21 start_atlas.sh
[2025-05-17 04:59:56] drwxrwx--x. 2 boinc boinc        68 May 16 23:21 shared
[2025-05-17 04:59:56] -rw-r--r--. 2 boinc boinc    508875 May 16 23:21 input.tar.gz
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc         0 May 16 23:21 boinc_lockfile
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc      2540 May 16 23:21 pandaJob.out
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc       424 May 16 23:21 setup.sh.local
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc    994643 May 16 23:21 agis_schedconf.cvmfs.json
[2025-05-17 04:59:56] drwx------. 4 boinc boinc      4096 May 16 23:21 pilot3
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc 190477024 May 17 04:35 HITS.44638099._034161.pool.root.1
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc       531 May 17 04:36 boinc_task_state.xml
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc      1019 May 17 04:36 memory_monitor_summary.json
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc   1596741 May 17 04:36 agis_ddmendpoints.agis.ALL.json
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc    445025 May 17 04:36 log.44638099._034161.job.log.tgz.1
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc        95 May 17 04:38 pilot_heartbeat.json
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc      7692 May 17 04:38 heartbeat.json
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc      4417 May 17 04:38 pilotlog.txt
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc   1642012 May 17 04:38 log.44638099._034161.job.log.1
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc       357 May 17 04:38 output.list
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc       620 May 17 04:38 runtime_log
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc   2109440 May 17 04:38 result.tar.gz
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc     11031 May 17 04:38 runtime_log.err
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc       658 May 17 04:38 qZOLDmvM1Z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmMUIKDmm3OLXm.diag
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc      8192 May 17 04:59 boinc_mmap_file
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc        28 May 17 04:59 wrapper_checkpoint.txt
[2025-05-17 04:59:56] -rw-r--r--. 1 boinc boinc     20498 May 17 04:59 stderr.txt
[2025-05-17 04:59:56] HITS file was successfully produced:
[2025-05-17 04:59:56] -rw-------. 1 boinc boinc 190477024 May 17 04:35 shared/HITS.pool.root.1
[2025-05-17 04:59:56]  *** Contents of shared directory: ***
[2025-05-17 04:59:57] total 406304
[2025-05-17 04:59:57] -rw-r--r--. 2 boinc boinc 222931545 May 16 23:21 ATLAS.root_0
[2025-05-17 04:59:57] -rw-r--r--. 2 boinc boinc     17569 May 16 23:21 start_atlas.sh
[2025-05-17 04:59:57] -rw-r--r--. 2 boinc boinc    508875 May 16 23:21 input.tar.gz
[2025-05-17 04:59:57] -rw-------. 1 boinc boinc 190477024 May 17 04:35 HITS.pool.root.1
[2025-05-17 04:59:57] -rw-------. 1 boinc boinc   2109440 May 17 04:38 result.tar.gz
04:59:58 (30365): run_atlas exited; CPU time 69912.244870
04:59:58 (30365): called boinc_finish(0)

</stderr_txt>
]]>

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