Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:20:06 (1117548): wrapper (7.7.26015): starting
06:20:06 (1117548): wrapper: running run_atlas (--nthreads 4)
[2025-05-17 06:20:06] Arguments: --nthreads 4
[2025-05-17 06:20:06] Threads: 4
[2025-05-17 06:20:06] Checking for CVMFS
[2025-05-17 06:20:06] No cvmfs_config command found, will try listing directly
[2025-05-17 06:20:06] CVMFS is ok
[2025-05-17 06:20:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-17 06:20:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-17 06:20:06] Further information can be found at the LHC@home message board.
[2025-05-17 06:20:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-17 06:20:06] Checking for apptainer binary...
[2025-05-17 06:20:06] which: no apptainer in ((null))
[2025-05-17 06:20:06] apptainer is not installed, using version from CVMFS
[2025-05-17 06:20:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-17 06:20:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-05-17 06:20:06] apptainer works
[2025-05-17 06:20:06] Set ATHENA_PROC_NUMBER=4
[2025-05-17 06:20:06] Set ATHENA_CORE_NUMBER=4
[2025-05-17 06:20:06] Starting ATLAS job with PandaID=6651101771
[2025-05-17 06:20:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-17 09:32:56]  *** The last 200 lines of the pilot log: ***
[2025-05-17 09:32:56] 2025-05-17 07:32:36,117 | INFO     | -- intersect: -41854981652.54013
[2025-05-17 09:32:56] 2025-05-17 07:32:36,117 | INFO     | intersect: -41854981652.54013
[2025-05-17 09:32:56] 2025-05-17 07:32:36,118 | INFO     | chi2: 1.5270072674254382
[2025-05-17 09:32:56] 2025-05-17 07:32:36,118 | INFO     | current chi2=1.5270072674254382 (change=62.053380066399185 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,118 | INFO     | sum of square deviations: 1778377530.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,119 | INFO     | sum of deviations: 11733679338.999998
[2025-05-17 09:32:56] 2025-05-17 07:32:36,119 | INFO     | mean x: 1747461686.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,119 | INFO     | mean y: 2314374.905027933
[2025-05-17 09:32:56] 2025-05-17 07:32:36,119 | INFO     | -- intersect: -11527383192.018404
[2025-05-17 09:32:56] 2025-05-17 07:32:36,119 | INFO     | intersect: -11527383192.018404
[2025-05-17 09:32:56] 2025-05-17 07:32:36,120 | INFO     | chi2: 0.06970656025883977
[2025-05-17 09:32:56] 2025-05-17 07:32:36,120 | INFO     | current chi2=0.06970656025883977 (change=95.43508654177093 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,120 | INFO     | sum of square deviations: 1633472487.5
[2025-05-17 09:32:56] 2025-05-17 07:32:36,121 | INFO     | sum of deviations: 5814577034.999999
[2025-05-17 09:32:56] 2025-05-17 07:32:36,121 | INFO     | mean x: 1747461838.5
[2025-05-17 09:32:56] 2025-05-17 07:32:36,121 | INFO     | mean y: 2320531.7586206896
[2025-05-17 09:32:56] 2025-05-17 07:32:36,121 | INFO     | -- intersect: -6218017768.050654
[2025-05-17 09:32:56] 2025-05-17 07:32:36,121 | INFO     | intersect: -6218017768.050654
[2025-05-17 09:32:56] 2025-05-17 07:32:36,122 | INFO     | chi2: 0.001047039253492373
[2025-05-17 09:32:56] 2025-05-17 07:32:36,122 | INFO     | current chi2=0.001047039253492373 (change=98.49793297846797 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,122 | INFO     | sum of square deviations: 1496660620.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,123 | INFO     | sum of deviations: 4814466297.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,123 | INFO     | mean x: 1747461991.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,123 | INFO     | mean y: 2321650.053254438
[2025-05-17 09:32:56] 2025-05-17 07:32:36,123 | INFO     | -- intersect: -5618923907.2448435
[2025-05-17 09:32:56] 2025-05-17 07:32:36,123 | INFO     | intersect: -5618923907.2448435
[2025-05-17 09:32:56] 2025-05-17 07:32:36,124 | INFO     | chi2: 0.0004414843380821209
[2025-05-17 09:32:56] 2025-05-17 07:32:36,124 | INFO     | current chi2=0.0004414843380821209 (change=57.8349773793522 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,124 | INFO     | sum of square deviations: 1367709365.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,125 | INFO     | sum of deviations: 4079836038.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,125 | INFO     | mean x: 1747462143.5
[2025-05-17 09:32:56] 2025-05-17 07:32:36,125 | INFO     | mean y: 2322518.3170731706
[2025-05-17 09:32:56] 2025-05-17 07:32:36,125 | INFO     | -- intersect: -5210304674.662649
[2025-05-17 09:32:56] 2025-05-17 07:32:36,125 | INFO     | intersect: -5210304674.662649
[2025-05-17 09:32:56] 2025-05-17 07:32:36,126 | INFO     | chi2: 0.0002775691283616872
[2025-05-17 09:32:56] 2025-05-17 07:32:36,126 | INFO     | current chi2=0.0002775691283616872 (change=37.1282049171909 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,126 | INFO     | sum of square deviations: 1246386160.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | sum of deviations: 3538902189.9999995
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | mean x: 1747462296.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | mean y: 2323196.610062893
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | -- intersect: -4959299729.511668
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | intersect: -4959299729.511668
[2025-05-17 09:32:56] 2025-05-17 07:32:36,127 | INFO     | chi2: 0.0002115083776225012
[2025-05-17 09:32:56] 2025-05-17 07:32:36,128 | INFO     | current chi2=0.0002115083776225012 (change=23.799747158158507 %)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,128 | INFO     | left removable region: 60
[2025-05-17 09:32:56] 2025-05-17 07:32:36,128 | INFO     | sum of square deviations: 576985702.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,128 | INFO     | sum of deviations: 1315454020.0000002
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | mean x: 1747463028.0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | mean y: 2325978.0162601625
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | -- intersect: -3981667484.9343576
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | intersect: -3981667484.9343576
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | chi2: 5.7095674451815755e-05
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | -- intersect: -3981667484.9343576
[2025-05-17 09:32:56] 2025-05-17 07:32:36,129 | INFO     | current memory leak: 2.28 B/s (using 123 data points, chi2=0.00)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | ..............................
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . Timing measurements:
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . get job = 0 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . initial setup = 1 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . payload setup = 6 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . stage-in = 0 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . payload execution = 11499 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . stage-out = 1 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | . log creation = 0 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,130 | INFO     | ..............................
[2025-05-17 09:32:56] 2025-05-17 07:32:36,219 | INFO     | 
[2025-05-17 09:32:56] 2025-05-17 07:32:36,222 | INFO     | job summary report
[2025-05-17 09:32:56] 2025-05-17 07:32:36,222 | INFO     | --------------------------------------------------
[2025-05-17 09:32:56] 2025-05-17 07:32:36,222 | INFO     | PanDA job id: 6651101771
[2025-05-17 09:32:56] 2025-05-17 07:32:36,222 | INFO     | task id: 44638099
[2025-05-17 09:32:56] 2025-05-17 07:32:36,222 | INFO     | errors: (none)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | pilot state: finished 
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | transexitcode: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | exeerrorcode: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | exeerrordiag: 
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | exitcode: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | exitmsg: OK
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | cpuconsumptiontime: 42361 s
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | nevents: 400
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | neventsw: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | pid: 1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | pgrp: 1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:36,223 | INFO     | corecount: 4
[2025-05-17 09:32:56] 2025-05-17 07:32:36,224 | INFO     | event service: False
[2025-05-17 09:32:56] 2025-05-17 07:32:36,224 | INFO     | sizes: {0: 2393502, 1: 2393701, 6: 2393907, 11: 2393935, 11510: 2423568, 11512: 2432533, 11515: 2432745, 11522: 2432915}
[2025-05-17 09:32:56] 2025-05-17 07:32:36,224 | INFO     | --------------------------------------------------
[2025-05-17 09:32:56] 2025-05-17 07:32:36,224 | INFO     | 
[2025-05-17 09:32:56] 2025-05-17 07:32:36,224 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-05-17 09:32:56] 2025-05-17 07:32:36,249 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,249 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | job 6651101771 has completed (purged errors)
[2025-05-17 09:32:56] 2025-05-17 07:32:36,251 | INFO     | overall cleanup function is called
[2025-05-17 09:32:56] 2025-05-17 07:32:37,262 | INFO     | --- collectZombieJob: --- 10, [1142460]
[2025-05-17 09:32:56] 2025-05-17 07:32:37,263 | INFO     | zombie collector waiting for pid 1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:37,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-17 09:32:56] 2025-05-17 07:32:37,263 | INFO     | collected zombie processes
[2025-05-17 09:32:56] 2025-05-17 07:32:37,263 | INFO     | will attempt to kill all subprocesses of pid=1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:38,272 | INFO     | process IDs to be killed: [1142460] (in reverse order)
[2025-05-17 09:32:56] 2025-05-17 07:32:38,526 | WARNING  | found no corresponding commands to process id(s)
[2025-05-17 09:32:56] 2025-05-17 07:32:38,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-17 09:32:56] 2025-05-17 07:32:38,615 | INFO     | did not find any defunct processes belonging to 1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:38,694 | INFO     | did not find any defunct processes belonging to 1142460
[2025-05-17 09:32:56] 2025-05-17 07:32:38,695 | INFO     | ready for new job
[2025-05-17 09:32:56] 2025-05-17 07:32:38,695 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-17 09:32:56] 2025-05-17 07:32:38,697 | INFO     | **************************************
[2025-05-17 09:32:56] 2025-05-17 07:32:38,697 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-17 09:32:56] 2025-05-17 07:32:38,697 | INFO     | **************************************
[2025-05-17 09:32:56] 2025-05-17 07:32:38,697 | INFO     | 
[2025-05-17 09:32:56] 2025-05-17 07:32:38,707 | INFO     | architecture information:
[2025-05-17 09:32:56] 2025-05-17 07:32:38,707 | INFO     | executing command: cat /etc/os-release
[2025-05-17 09:32:56] 2025-05-17 07:32:38,734 | INFO     | cat /etc/os-release:
[2025-05-17 09:32:56] NAME="CentOS Linux"
[2025-05-17 09:32:56] VERSION="7 (Core)"
[2025-05-17 09:32:56] ID="centos"
[2025-05-17 09:32:56] ID_LIKE="rhel fedora"
[2025-05-17 09:32:56] VERSION_ID="7"
[2025-05-17 09:32:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-17 09:32:56] ANSI_COLOR="0;31"
[2025-05-17 09:32:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-17 09:32:56] HOME_URL="https://www.centos.org/"
[2025-05-17 09:32:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-17 09:32:56] 
[2025-05-17 09:32:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-17 09:32:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-17 09:32:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-17 09:32:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-17 09:32:56] 
[2025-05-17 09:32:56] 2025-05-17 07:32:38,734 | INFO     | **************************************
[2025-05-17 09:32:56] 2025-05-17 07:32:38,972 | INFO     | PID=1123809 has CPU usage=23.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-17 09:32:56] 2025-05-17 07:32:38,972 | INFO     | .. there are 27 such processes running
[2025-05-17 09:32:56] 2025-05-17 07:32:39,238 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-05-17 09:32:56] 2025-05-17 07:32:39,261 | INFO     | sufficient remaining disk space (3317032812544 B)
[2025-05-17 09:32:56] 2025-05-17 07:32:39,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-17 09:32:56] 2025-05-17 07:32:39,262 | INFO     | current server update state: UPDATING_FINAL
[2025-05-17 09:32:56] 2025-05-17 07:32:39,262 | INFO     | update_server=False
[2025-05-17 09:32:56] 2025-05-17 07:32:39,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-17 09:32:56] 2025-05-17 07:32:39,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-17 09:32:56] 2025-05-17 07:32:39,263 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-17 09:32:56] 2025-05-17 07:32:39,263 | INFO     | aborting loop
[2025-05-17 09:32:56] 2025-05-17 07:32:39,263 | INFO     | found 0 job(s) in 20 queues
[2025-05-17 09:32:56] 2025-05-17 07:32:39,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-17 09:32:56] 2025-05-17 07:32:39,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-17 09:32:56] 2025-05-17 07:32:39,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-17 09:32:56] 2025-05-17 07:32:39,674 | INFO     | all data control threads have been joined
[2025-05-17 09:32:56] 2025-05-17 07:32:40,101 | INFO     | all payload control threads have been joined
[2025-05-17 09:32:56] 2025-05-17 07:32:40,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-17 09:32:56] 2025-05-17 07:32:40,267 | INFO     | [job] retrieve thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,268 | INFO     | [job] job monitor thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,383 | INFO     | [payload] execute_payloads thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,675 | INFO     | [data] control thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,763 | INFO     | [payload] failed_post thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,815 | INFO     | [job] validate thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:40,837 | INFO     | all job control threads have been joined
[2025-05-17 09:32:56] 2025-05-17 07:32:41,106 | INFO     | [payload] control thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,160 | INFO     | [job] create_data_payload thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,173 | INFO     | [data] copytool_in thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-17 09:32:56] 2025-05-17 07:32:41,565 | INFO     | [payload] validate_post thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,569 | INFO     | [data] copytool_out thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,765 | INFO     | [payload] validate_pre thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:41,842 | INFO     | [job] control thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:42,244 | INFO     | [job] queue monitor thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:44,234 | INFO     | [data] queue_monitor thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:49,932 | INFO     | job.realtimelogging is not enabled
[2025-05-17 09:32:56] 2025-05-17 07:32:50,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-17 09:32:56] 2025-05-17 07:32:51,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22972044789568)>', '<ExcThread(monitor, started 22971794007808)>']
[2025-05-17 09:32:56] 2025-05-17 07:32:51,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-17 09:32:56] 2025-05-17 07:32:51,323 | INFO     | [monitor] control thread has ended
[2025-05-17 09:32:56] 2025-05-17 07:32:56,197 | INFO     | all workflow threads have been joined
[2025-05-17 09:32:56] 2025-05-17 07:32:56,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-17 09:32:56] 2025-05-17 07:32:56,198 | INFO     | traces error code: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:56,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-17 09:32:56] 2025-05-17 07:32:56,352 [wrapper] ==== pilot stdout END ====
[2025-05-17 09:32:56] 2025-05-17 07:32:56,356 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-17 09:32:56] 2025-05-17 07:32:56,359 [wrapper] pilotpid: 1123809
[2025-05-17 09:32:56] 2025-05-17 07:32:56,362 [wrapper] Pilot exit status: 0
[2025-05-17 09:32:56] 2025-05-17 07:32:56,377 [wrapper] pandaids: 6651101771
[2025-05-17 09:32:56] 2025-05-17 07:32:56,513 [wrapper] cleanup supervisor_pilot 2100809 1123810
[2025-05-17 09:32:56] 2025-05-17 07:32:56,517 [wrapper] Test setup, not cleaning
[2025-05-17 09:32:56] 2025-05-17 07:32:56,520 [wrapper] apfmon messages muted
[2025-05-17 09:32:56] 2025-05-17 07:32:56,527 [wrapper] ==== wrapper stdout END ====
[2025-05-17 09:32:56] 2025-05-17 07:32:56,530 [wrapper] ==== wrapper stderr END ====
[2025-05-17 09:32:56]  *** Error codes and diagnostics ***
[2025-05-17 09:32:56]     "exeErrorCode": 0,
[2025-05-17 09:32:56]     "exeErrorDiag": "",
[2025-05-17 09:32:56]     "pilotErrorCode": 0,
[2025-05-17 09:32:56]     "pilotErrorDiag": "",
[2025-05-17 09:32:56]  *** Listing of results directory ***
[2025-05-17 09:32:56] total 413416
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc    495897 May 16 04:46 pilot3.tar.gz
[2025-05-17 09:32:56] -rwx------ 1 boinc boinc     37140 May 16 04:48 runpilot2-wrapper.sh
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc      5111 May 16 04:48 queuedata.json
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc       100 May 17 06:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-17 09:32:56] -rwxr-xr-x 1 boinc boinc      7986 May 17 06:19 run_atlas
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc       105 May 17 06:19 job.xml
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc 221686604 May 17 06:20 EVNT.44638096._000899.pool.root.1
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc      6673 May 17 06:20 init_data.xml
[2025-05-17 09:32:56] drwxrwx--x 2 boinc boinc      4096 May 17 06:20 shared
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc    508881 May 17 06:20 input.tar.gz
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc     17569 May 17 06:20 start_atlas.sh
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc         0 May 17 06:20 boinc_lockfile
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc      2539 May 17 06:20 pandaJob.out
[2025-05-17 09:32:56] -rw------- 1 boinc boinc       424 May 17 06:20 setup.sh.local
[2025-05-17 09:32:56] -rw------- 1 boinc boinc    994635 May 17 06:20 agis_schedconf.cvmfs.json
[2025-05-17 09:32:56] drwx------ 4 boinc boinc      4096 May 17 06:20 pilot3
[2025-05-17 09:32:56] -rw------- 1 boinc boinc 195017203 May 17 09:31 HITS.44638099._033363.pool.root.1
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc       531 May 17 09:32 boinc_task_state.xml
[2025-05-17 09:32:56] -rw------- 1 boinc boinc      1025 May 17 09:32 memory_monitor_summary.json
[2025-05-17 09:32:56] -rw------- 1 boinc boinc        95 May 17 09:32 pilot_heartbeat.json
[2025-05-17 09:32:56] -rw------- 1 boinc boinc   1596741 May 17 09:32 agis_ddmendpoints.agis.ALL.json
[2025-05-17 09:32:56] -rw------- 1 boinc boinc    316798 May 17 09:32 log.44638099._033363.job.log.tgz.1
[2025-05-17 09:32:56] -rw------- 1 boinc boinc      7695 May 17 09:32 heartbeat.json
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc      8192 May 17 09:32 boinc_mmap_file
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc        28 May 17 09:32 wrapper_checkpoint.txt
[2025-05-17 09:32:56] -rw------- 1 boinc boinc      4956 May 17 09:32 pilotlog.txt
[2025-05-17 09:32:56] -rw------- 1 boinc boinc   1079672 May 17 09:32 log.44638099._033363.job.log.1
[2025-05-17 09:32:56] -rw------- 1 boinc boinc       357 May 17 09:32 output.list
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc       620 May 17 09:32 runtime_log
[2025-05-17 09:32:56] -rw------- 1 boinc boinc   1413120 May 17 09:32 result.tar.gz
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc     11443 May 17 09:32 runtime_log.err
[2025-05-17 09:32:56] -rw------- 1 boinc boinc       664 May 17 09:32 lnmMDm4I0Z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmksKKDmen1jpn.diag
[2025-05-17 09:32:56] -rw-r--r-- 1 boinc boinc     20760 May 17 09:32 stderr.txt
[2025-05-17 09:32:56] HITS file was successfully produced:
[2025-05-17 09:32:56] -rw------- 1 boinc boinc 195017203 May 17 09:31 shared/HITS.pool.root.1
[2025-05-17 09:32:56]  *** Contents of shared directory: ***
[2025-05-17 09:32:56] total 408848
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc 221686604 May 17 06:20 ATLAS.root_0
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc    508881 May 17 06:20 input.tar.gz
[2025-05-17 09:32:56] -rw-r--r-- 2 boinc boinc     17569 May 17 06:20 start_atlas.sh
[2025-05-17 09:32:56] -rw------- 1 boinc boinc 195017203 May 17 09:31 HITS.pool.root.1
[2025-05-17 09:32:56] -rw------- 1 boinc boinc   1413120 May 17 09:32 result.tar.gz
09:32:58 (1117548): run_atlas exited; CPU time 42988.575022
09:32:58 (1117548): called boinc_finish(0)

</stderr_txt>
]]>

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