Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:40 (3215193): wrapper (7.7.26015): starting
23:53:40 (3215193): wrapper: running run_atlas (--nthreads 8)
[2025-05-15 23:53:40] Arguments: --nthreads 8
[2025-05-15 23:53:40] Threads: 8
[2025-05-15 23:53:40] Checking for CVMFS
[2025-05-15 23:53:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-15 23:53:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-15 23:53:41] Running cvmfs_config stat atlas.cern.ch
[2025-05-15 23:53:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-15 23:53:41] 2.12.6.0 14765 4914 258488 146051 3 464 26028552 32935936 32875 16776704 1 48524388 99.630 45754480 22494 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-15 23:53:41] CVMFS is ok
[2025-05-15 23:53:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-15 23:53:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-15 23:53:41] Further information can be found at the LHC@home message board.
[2025-05-15 23:53:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-15 23:53:41] Checking for apptainer binary...
[2025-05-15 23:53:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-15 23:53:41] Running /usr/bin/apptainer --version
[2025-05-15 23:53:41] apptainer version 1.4.0-1.el9
[2025-05-15 23:53:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-15 23:53:42] c7-7-35.aglt2.org
[2025-05-15 23:53:42] apptainer works
[2025-05-15 23:53:42] Set ATHENA_PROC_NUMBER=8
[2025-05-15 23:53:42] Set ATHENA_CORE_NUMBER=8
[2025-05-15 23:53:42] Starting ATLAS job with PandaID=6650683343
[2025-05-15 23:53:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-16 04:26:53]  *** The last 200 lines of the pilot log: ***
[2025-05-16 04:26:53] 2025-05-16 08:26:30,993 | INFO     | -- intersect: -55400921871.45661
[2025-05-16 04:26:53] 2025-05-16 08:26:30,993 | INFO     | intersect: -55400921871.45661
[2025-05-16 04:26:53] 2025-05-16 08:26:30,993 | INFO     | chi2: 6.634803822771305
[2025-05-16 04:26:53] 2025-05-16 08:26:30,993 | INFO     | sum of square deviations: 5512949352.467473
[2025-05-16 04:26:53] 2025-05-16 08:26:31,010 | INFO     | sum of deviations: 195285725729.43698
[2025-05-16 04:26:53] 2025-05-16 08:26:31,010 | INFO     | mean x: 1747375719.145594
[2025-05-16 04:26:53] 2025-05-16 08:26:31,010 | INFO     | mean y: 2047365.9885057472
[2025-05-16 04:26:53] 2025-05-16 08:26:31,010 | INFO     | -- intersect: -61895407810.633766
[2025-05-16 04:26:53] 2025-05-16 08:26:31,011 | INFO     | intersect: -61895407810.633766
[2025-05-16 04:26:53] 2025-05-16 08:26:31,011 | INFO     | chi2: 5.9659369494525345
[2025-05-16 04:26:53] 2025-05-16 08:26:31,011 | INFO     | current chi2=5.9659369494525345 (change=10.081185385212944 %)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,011 | INFO     | right removable region: 260
[2025-05-16 04:26:53] 2025-05-16 08:26:31,011 | INFO     | sum of square deviations: 5512926172.467471
[2025-05-16 04:26:53] 2025-05-16 08:26:31,033 | INFO     | sum of deviations: 121572279916.67815
[2025-05-16 04:26:53] 2025-05-16 08:26:31,033 | INFO     | mean x: 1747376024.145594
[2025-05-16 04:26:53] 2025-05-16 08:26:31,033 | INFO     | mean y: 2072530.8505747127
[2025-05-16 04:26:53] 2025-05-16 08:26:31,033 | INFO     | -- intersect: -38531454035.86561
[2025-05-16 04:26:53] 2025-05-16 08:26:31,033 | INFO     | intersect: -38531454035.86561
[2025-05-16 04:26:53] 2025-05-16 08:26:31,034 | INFO     | chi2: 3.430857508723398
[2025-05-16 04:26:53] 2025-05-16 08:26:31,034 | INFO     | current chi2=3.430857508723398 (change=48.2899931879168 %)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,034 | INFO     | sum of square deviations: 5202099452.359375
[2025-05-16 04:26:53] 2025-05-16 08:26:31,035 | INFO     | sum of deviations: 79090709987.5625
[2025-05-16 04:26:53] 2025-05-16 08:26:31,035 | INFO     | mean x: 1747376176.6484375
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | mean y: 2093359.40625
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | -- intersect: -26564338845.921383
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | intersect: -26564338845.921383
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | chi2: 2.1783933432255163
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | current chi2=2.1783933432255163 (change=36.505863688985336 %)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,036 | INFO     | sum of square deviations: 4903179932.246997
[2025-05-16 04:26:53] 2025-05-16 08:26:31,065 | INFO     | sum of deviations: 41031477152.37054
[2025-05-16 04:26:53] 2025-05-16 08:26:31,065 | INFO     | mean x: 1747376329.1513944
[2025-05-16 04:26:53] 2025-05-16 08:26:31,065 | INFO     | mean y: 2112760.2270916332
[2025-05-16 04:26:53] 2025-05-16 08:26:31,065 | INFO     | -- intersect: -14620526611.9551
[2025-05-16 04:26:53] 2025-05-16 08:26:31,065 | INFO     | intersect: -14620526611.9551
[2025-05-16 04:26:53] 2025-05-16 08:26:31,066 | INFO     | chi2: 1.14614884394589
[2025-05-16 04:26:53] 2025-05-16 08:26:31,066 | INFO     | current chi2=1.14614884394589 (change=47.385588212971506 %)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,066 | INFO     | sum of square deviations: 4615935049.630104
[2025-05-16 04:26:53] 2025-05-16 08:26:31,084 | INFO     | sum of deviations: 25970124717.90245
[2025-05-16 04:26:53] 2025-05-16 08:26:31,084 | INFO     | mean x: 1747376481.6544716
[2025-05-16 04:26:53] 2025-05-16 08:26:31,084 | INFO     | mean y: 2120712.6341463416
[2025-05-16 04:26:53] 2025-05-16 08:26:31,084 | INFO     | -- intersect: -9828950277.269121
[2025-05-16 04:26:53] 2025-05-16 08:26:31,084 | INFO     | intersect: -9828950277.269121
[2025-05-16 04:26:53] 2025-05-16 08:26:31,085 | INFO     | chi2: 0.9626978664723844
[2025-05-16 04:26:53] 2025-05-16 08:26:31,085 | INFO     | current chi2=0.9626978664723844 (change=16.005859835964408 %)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,085 | INFO     | left removable region: 40
[2025-05-16 04:26:53] 2025-05-16 08:26:31,085 | INFO     | sum of square deviations: 3301659499.9272594
[2025-05-16 04:26:53] 2025-05-16 08:26:31,086 | INFO     | sum of deviations: 24078608578.1091
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | mean x: 1747376908.6181817
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | mean y: 2135394.5727272728
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | -- intersect: -12741275796.669275
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | intersect: -12741275796.669275
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | chi2: 0.08537280309947554
[2025-05-16 04:26:53] 2025-05-16 08:26:31,103 | INFO     | -- intersect: -12741275796.669275
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | current memory leak: 7.29 B/s (using 220 data points, chi2=0.09)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | ..............................
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | . Timing measurements:
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | . get job = 0 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | . initial setup = 8 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | . payload setup = 38 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,104 | INFO     | . stage-in = 0 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,105 | INFO     | . payload execution = 16199 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,105 | INFO     | . stage-out = 3 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,105 | INFO     | . log creation = 0 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,105 | INFO     | ..............................
[2025-05-16 04:26:53] 2025-05-16 08:26:31,387 | INFO     | 
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | job summary report
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | --------------------------------------------------
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | PanDA job id: 6650683343
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | task id: 44638099
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | errors: (none)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,391 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | pilot state: finished 
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | transexitcode: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | exeerrorcode: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | exeerrordiag: 
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | exitcode: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | exitmsg: OK
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | cpuconsumptiontime: 40626 s
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | nevents: 400
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | neventsw: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | pid: 3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | pgrp: 3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | corecount: 8
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | event service: False
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | sizes: {0: 2393483, 1: 2393738, 12: 2393738, 15: 2393972, 23: 2394000, 16242: 2425172, 16247: 2434169, 16264: 2434283}
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | --------------------------------------------------
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | 
[2025-05-16 04:26:53] 2025-05-16 08:26:31,392 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,440 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | job 6650683343 has completed (purged errors)
[2025-05-16 04:26:53] 2025-05-16 08:26:31,441 | INFO     | overall cleanup function is called
[2025-05-16 04:26:53] 2025-05-16 08:26:32,498 | INFO     | --- collectZombieJob: --- 10, [3245629]
[2025-05-16 04:26:53] 2025-05-16 08:26:32,499 | INFO     | zombie collector waiting for pid 3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:32,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-16 04:26:53] 2025-05-16 08:26:32,499 | INFO     | collected zombie processes
[2025-05-16 04:26:53] 2025-05-16 08:26:32,499 | INFO     | will attempt to kill all subprocesses of pid=3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:32,993 | INFO     | PID=3225675 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-16 04:26:53] 2025-05-16 08:26:32,993 | INFO     | .. there are 44 such processes running
[2025-05-16 04:26:53] 2025-05-16 08:26:34,135 | INFO     | process IDs to be killed: [3245629] (in reverse order)
[2025-05-16 04:26:53] 2025-05-16 08:26:34,414 | WARNING  | found no corresponding commands to process id(s)
[2025-05-16 04:26:53] 2025-05-16 08:26:34,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-16 04:26:53] 2025-05-16 08:26:34,478 | INFO     | did not find any defunct processes belonging to 3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:34,548 | INFO     | did not find any defunct processes belonging to 3245629
[2025-05-16 04:26:53] 2025-05-16 08:26:34,548 | INFO     | ready for new job
[2025-05-16 04:26:53] 2025-05-16 08:26:34,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-16 04:26:53] 2025-05-16 08:26:34,551 | INFO     | **************************************
[2025-05-16 04:26:53] 2025-05-16 08:26:34,551 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-16 04:26:53] 2025-05-16 08:26:34,551 | INFO     | **************************************
[2025-05-16 04:26:53] 2025-05-16 08:26:34,551 | INFO     | 
[2025-05-16 04:26:53] 2025-05-16 08:26:34,560 | INFO     | architecture information:
[2025-05-16 04:26:53] 2025-05-16 08:26:34,568 | INFO     | executing command: cat /etc/os-release
[2025-05-16 04:26:53] 2025-05-16 08:26:34,585 | INFO     | cat /etc/os-release:
[2025-05-16 04:26:53] NAME="CentOS Linux"
[2025-05-16 04:26:53] VERSION="7 (Core)"
[2025-05-16 04:26:53] ID="centos"
[2025-05-16 04:26:53] ID_LIKE="rhel fedora"
[2025-05-16 04:26:53] VERSION_ID="7"
[2025-05-16 04:26:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-16 04:26:53] ANSI_COLOR="0;31"
[2025-05-16 04:26:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-16 04:26:53] HOME_URL="https://www.centos.org/"
[2025-05-16 04:26:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-16 04:26:53] 
[2025-05-16 04:26:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-16 04:26:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-16 04:26:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-16 04:26:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-16 04:26:53] 
[2025-05-16 04:26:53] 2025-05-16 08:26:34,585 | INFO     | **************************************
[2025-05-16 04:26:53] 2025-05-16 08:26:35,134 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-05-16 04:26:53] 2025-05-16 08:26:35,200 | INFO     | sufficient remaining disk space (73818701824 B)
[2025-05-16 04:26:53] 2025-05-16 08:26:35,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-16 04:26:53] 2025-05-16 08:26:35,200 | INFO     | current server update state: UPDATING_FINAL
[2025-05-16 04:26:53] 2025-05-16 08:26:35,200 | INFO     | update_server=False
[2025-05-16 04:26:53] 2025-05-16 08:26:35,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-16 04:26:53] 2025-05-16 08:26:35,201 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-16 04:26:53] 2025-05-16 08:26:35,201 | INFO     | found 0 job(s) in 20 queues
[2025-05-16 04:26:53] 2025-05-16 08:26:35,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-16 04:26:53] 2025-05-16 08:26:35,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-16 04:26:53] 2025-05-16 08:26:35,201 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-16 04:26:53] 2025-05-16 08:26:35,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-16 04:26:53] 2025-05-16 08:26:35,440 | INFO     | aborting loop
[2025-05-16 04:26:53] 2025-05-16 08:26:35,729 | INFO     | all data control threads have been joined
[2025-05-16 04:26:53] 2025-05-16 08:26:36,206 | INFO     | [job] retrieve thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,445 | INFO     | [job] job monitor thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-16 04:26:53] 2025-05-16 08:26:36,675 | INFO     | [payload] failed_post thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,699 | INFO     | [payload] validate_post thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,736 | INFO     | [data] control thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,737 | INFO     | [payload] validate_pre thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,740 | INFO     | [job] create_data_payload thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:36,747 | INFO     | all payload control threads have been joined
[2025-05-16 04:26:53] 2025-05-16 08:26:36,902 | INFO     | all job control threads have been joined
[2025-05-16 04:26:53] 2025-05-16 08:26:37,208 | INFO     | [data] copytool_out thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,456 | INFO     | [job] queue monitor thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,506 | INFO     | [data] copytool_in thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,506 | INFO     | [payload] execute_payloads thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,632 | INFO     | [job] validate thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,755 | INFO     | [payload] control thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:37,907 | INFO     | [job] control thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:38,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-16 04:26:53] 2025-05-16 08:26:42,471 | INFO     | [data] queue_monitor thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:45,443 | INFO     | job.realtimelogging is not enabled
[2025-05-16 04:26:53] 2025-05-16 08:26:46,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-16 04:26:53] 2025-05-16 08:26:47,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846833342272)>', '<ExcThread(monitor, started 139846190352128)>']
[2025-05-16 04:26:53] 2025-05-16 08:26:48,289 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-16 04:26:53] 2025-05-16 08:26:48,290 | INFO     | [monitor] control thread has ended
[2025-05-16 04:26:53] 2025-05-16 08:26:52,767 | INFO     | all workflow threads have been joined
[2025-05-16 04:26:53] 2025-05-16 08:26:52,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-16 04:26:53] 2025-05-16 08:26:52,768 | INFO     | traces error code: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:52,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-16 04:26:53] 2025-05-16 08:26:53,067 [wrapper] ==== pilot stdout END ====
[2025-05-16 04:26:53] 2025-05-16 08:26:53,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-16 04:26:53] 2025-05-16 08:26:53,104 [wrapper] pilotpid: 3225675
[2025-05-16 04:26:53] 2025-05-16 08:26:53,106 [wrapper] Pilot exit status: 0
[2025-05-16 04:26:53] 2025-05-16 08:26:53,127 [wrapper] pandaids: 6650683343
[2025-05-16 04:26:53] 2025-05-16 08:26:53,280 [wrapper] cleanup supervisor_pilot  628827 3225676
[2025-05-16 04:26:53] 2025-05-16 08:26:53,285 [wrapper] Test setup, not cleaning
[2025-05-16 04:26:53] 2025-05-16 08:26:53,288 [wrapper] apfmon messages muted
[2025-05-16 04:26:53] 2025-05-16 08:26:53,290 [wrapper] ==== wrapper stdout END ====
[2025-05-16 04:26:53] 2025-05-16 08:26:53,292 [wrapper] ==== wrapper stderr END ====
[2025-05-16 04:26:53]  *** Error codes and diagnostics ***
[2025-05-16 04:26:53]     "exeErrorCode": 0,
[2025-05-16 04:26:53]     "exeErrorDiag": "",
[2025-05-16 04:26:53]     "pilotErrorCode": 0,
[2025-05-16 04:26:53]     "pilotErrorDiag": "",
[2025-05-16 04:26:53]  *** Listing of results directory ***
[2025-05-16 04:26:53] total 422284
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas    495897 May 15 16:43 pilot3.tar.gz
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas      5111 May 15 16:49 queuedata.json
[2025-05-16 04:26:53] -rwx------. 1 boincer umatlas     37140 May 15 16:50 runpilot2-wrapper.sh
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas       100 May 15 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-16 04:26:53] -rwxr-xr-x. 1 boincer umatlas      7986 May 15 23:53 run_atlas
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas       105 May 15 23:53 job.xml
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas 223310926 May 15 23:53 EVNT.44638096._000329.pool.root.1
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas     17569 May 15 23:53 start_atlas.sh
[2025-05-16 04:26:53] drwxrwx--x. 2 boincer umatlas      4096 May 15 23:53 shared
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas    508877 May 15 23:53 input.tar.gz
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas         0 May 15 23:53 boinc_lockfile
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas      2538 May 15 23:53 pandaJob.out
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas       467 May 15 23:53 setup.sh.local
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas    995903 May 15 23:54 agis_schedconf.cvmfs.json
[2025-05-16 04:26:53] drwx------. 4 boincer umatlas      4096 May 15 23:54 pilot3
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas      6933 May 16 04:20 init_data.xml
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas 201775695 May 16 04:25 HITS.44638099._029378.pool.root.1
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas       531 May 16 04:25 boinc_task_state.xml
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas      1036 May 16 04:26 memory_monitor_summary.json
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas        95 May 16 04:26 pilot_heartbeat.json
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas   1596741 May 16 04:26 agis_ddmendpoints.agis.ALL.json
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas    406463 May 16 04:26 log.44638099._029378.job.log.tgz.1
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas      7695 May 16 04:26 heartbeat.json
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas        28 May 16 04:26 wrapper_checkpoint.txt
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas      4548 May 16 04:26 pilotlog.txt
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas   1338601 May 16 04:26 log.44638099._029378.job.log.1
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas       357 May 16 04:26 output.list
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas       620 May 16 04:26 runtime_log
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas   1761280 May 16 04:26 result.tar.gz
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas     11414 May 16 04:26 runtime_log.err
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas       654 May 16 04:26 ibHLDmNiuZ7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzEKKDmibUKIm.diag
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas      8192 May 16 04:26 boinc_mmap_file
[2025-05-16 04:26:53] -rw-r--r--. 1 boincer umatlas     20977 May 16 04:26 stderr.txt
[2025-05-16 04:26:53] HITS file was successfully produced:
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas 201775695 May 16 04:25 shared/HITS.pool.root.1
[2025-05-16 04:26:53]  *** Contents of shared directory: ***
[2025-05-16 04:26:53] total 417372
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas 223310926 May 15 23:53 ATLAS.root_0
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas     17569 May 15 23:53 start_atlas.sh
[2025-05-16 04:26:53] -rw-r--r--. 2 boincer umatlas    508877 May 15 23:53 input.tar.gz
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas 201775695 May 16 04:25 HITS.pool.root.1
[2025-05-16 04:26:53] -rw-------. 1 boincer umatlas   1761280 May 16 04:26 result.tar.gz
04:27:16 (3215193): run_atlas exited; CPU time 41417.735324
04:27:16 (3215193): called boinc_finish(0)

</stderr_txt>
]]>

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