Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-17 19:12:53 (3516): Detected: vboxwrapper 26206
2025-05-17 19:12:53 (3516): Detected: BOINC client v8.0.2
2025-05-17 19:12:55 (3516): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-17 19:12:55 (3516): Successfully copied 'init_data.xml' to the shared directory.
2025-05-17 19:12:55 (3516): Create VM. (boinc_a4764dd98d1ff8c3, slot#0)
2025-05-17 19:12:56 (3516): Setting Memory Size for VM. (4400MB)
2025-05-17 19:12:56 (3516): Setting CPU Count for VM. (4)
2025-05-17 19:12:56 (3516): Setting Chipset Options for VM.
2025-05-17 19:12:57 (3516): Setting Graphics Controller Options for VM.
2025-05-17 19:12:57 (3516): Setting Boot Options for VM.
2025-05-17 19:12:57 (3516): Setting Network Configuration for NAT.
2025-05-17 19:12:58 (3516): Enabling VM Network Access.
2025-05-17 19:12:58 (3516): Disabling USB Support for VM.
2025-05-17 19:12:58 (3516): Disabling COM Port Support for VM.
2025-05-17 19:12:58 (3516): Disabling LPT Port Support for VM.
2025-05-17 19:12:59 (3516): Disabling Audio Support for VM.
2025-05-17 19:12:59 (3516): Disabling Clipboard Support for VM.
2025-05-17 19:12:59 (3516): Disabling Drag and Drop Support for VM.
2025-05-17 19:12:59 (3516): Adding storage controller(s) to VM.
2025-05-17 19:13:00 (3516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-17 19:13:03 (3516): Adding VirtualBox Guest Additions to VM.
2025-05-17 19:13:03 (3516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-17 19:13:03 (3516): forwarding host port 50564 to guest port 80
2025-05-17 19:13:03 (3516): Enabling remote desktop for VM.
2025-05-17 19:13:04 (3516): Required extension pack not installed, remote desktop not enabled.
2025-05-17 19:13:04 (3516): Enabling shared directory for VM.
2025-05-17 19:13:04 (3516): Starting VM using VBoxManage interface. (boinc_a4764dd98d1ff8c3, slot#0)
2025-05-17 19:13:13 (3516): Successfully started VM. (PID = '7540')
2025-05-17 19:13:13 (3516): Reporting VM Process ID to BOINC.
2025-05-17 19:13:13 (3516): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-17 19:13:13 (3516): Guest Log: CPUID EDX: 0x178bfbff
2025-05-17 19:13:13 (3516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-17 19:13:13 (3516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-17 19:13:13 (3516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-17 19:13:13 (3516): Detected: Web Application Enabled (http://localhost:50564)
2025-05-17 19:13:13 (3516): Preference change detected
2025-05-17 19:13:13 (3516): Setting CPU throttle for VM. (100%)
2025-05-17 19:13:14 (3516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-17 19:13:15 (3516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-17 19:13:15 (3516): Guest Log: BIOS: Booting from Hard Disk...
2025-05-17 19:13:20 (3516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-17 19:13:20 (3516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-17 19:13:20 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-17 19:13:30 (3516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-17 19:13:30 (3516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-17 19:13:45 (3516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000349 main     Log opened 2025-05-17T19:13:43.552988000Z
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000579 main     OS Product: Linux
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000651 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000723 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000795 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000797 main     Process ID: 1315
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.000799 main     Package type: LINUX_64BITS_GENERIC
2025-05-17 19:13:45 (3516): Guest Log: 00:00:00.002554 main     5.2.32 r132073 started. Verbose level = 0
2025-05-17 19:13:45 (3516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-17 19:13:45 (3516): Guest Log: [INFO] Mounting shared directory
2025-05-17 19:13:45 (3516): Guest Log: [INFO] Checking for init_data.xml
2025-05-17 19:13:52 (3516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-17 19:13:52 (3516): Guest Log: [INFO] Detected branch: prod
2025-05-17 19:13:53 (3516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-17 19:13:53 (3516): Guest Log: Copying input files
2025-05-17 19:13:55 (3516): Guest Log: 00:00:10.005444 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 617 314 000ns (GuestNow=1 747 502 034 940 363 000 ns GuestLast=1 747 509 223 557 677 000 ns fSetTimeLastLoop=true )
2025-05-17 19:13:55 (3516): Guest Log: Copied input files into RunAtlas.
2025-05-17 19:13:55 (3516): Guest Log: Detected user-configured HTTP proxy at http://192.168.35.184:3128 - will set in /etc/cvmfs/default.local
2025-05-17 19:14:07 (3516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-17 19:14:07 (3516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-17 19:14:07 (3516): Guest Log: 2.6.3.0 1592 0 31504 146108 3 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
2025-05-17 19:14:08 (3516): Guest Log: copied the webapp to /var/www
2025-05-17 19:14:08 (3516): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-17 19:14:08 (3516): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-17 19:14:08 (3516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-17 19:14:09 (3516): Guest Log:  *** Starting ATLAS job. (PandaID=6650756610 taskID=44638099) ***
2025-05-17 20:53:20 (3516): Status Report: Elapsed Time: '6000.000000'
2025-05-17 20:53:20 (3516): Status Report: CPU Time: '11908.656250'
2025-05-17 22:33:28 (3516): Status Report: Elapsed Time: '12000.000000'
2025-05-17 22:33:28 (3516): Status Report: CPU Time: '26231.859375'
2025-05-18 00:13:35 (3516): Status Report: Elapsed Time: '18000.000000'
2025-05-18 00:13:35 (3516): Status Report: CPU Time: '40573.140625'
2025-05-18 01:53:42 (3516): Status Report: Elapsed Time: '24000.000000'
2025-05-18 01:53:42 (3516): Status Report: CPU Time: '54902.937500'
2025-05-18 03:33:50 (3516): Status Report: Elapsed Time: '30000.000000'
2025-05-18 03:33:50 (3516): Status Report: CPU Time: '69335.843750'
2025-05-18 05:13:57 (3516): Status Report: Elapsed Time: '36000.000000'
2025-05-18 05:13:57 (3516): Status Report: CPU Time: '83672.781250'
2025-05-18 05:48:17 (3516): Guest Log:  *** Job finished ***
2025-05-18 05:48:17 (3516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:01,305 | INFO     | [data] queue_monitor thread has finished
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:05,356 | INFO     | job.realtimelogging is not enabled
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:06,487 | INFO     | [payload] run_realtimelog thread has finished
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:08,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140417623656256)>', '<ExcThread(monitor, started 140416959633152)>']
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:08,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:08,327 | INFO     | [monitor] control thread has ended
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,163 | INFO     | all workflow threads have been joined
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,163 | INFO     | end of generic workflow (traces error code: 0)
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,164 | INFO     | traces error code: 0
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,322 [wrapper] ==== pilot stdout END ====
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,330 [wrapper] ==== wrapper stdout RESUME ====
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,338 [wrapper] pilotpid: 5913
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,345 [wrapper] Pilot exit status: 0
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,400 [wrapper] pandaids: 6650756610
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,471 [wrapper] cleanup supervisor_pilot 13815 5914
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,481 [wrapper] Test setup, not cleaning
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,489 [wrapper] apfmon messages muted
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,497 [wrapper] ==== wrapper stdout END ====
2025-05-18 05:48:17 (3516): Guest Log: 2025-05-18 03:48:13,504 [wrapper] ==== wrapper stderr END ====
2025-05-18 05:48:17 (3516): Guest Log:  *** Error codes and diagnostics ***
2025-05-18 05:48:17 (3516): Guest Log:     "exeErrorCode": 0,
2025-05-18 05:48:17 (3516): Guest Log:     "exeErrorDiag": "",
2025-05-18 05:48:17 (3516): Guest Log:     "pilotErrorCode": 0,
2025-05-18 05:48:17 (3516): Guest Log:     "pilotErrorDiag": "",
2025-05-18 05:48:17 (3516): Guest Log:  *** Listing of results directory ***
2025-05-18 05:48:17 (3516): Guest Log: total 193736
2025-05-18 05:48:17 (3516): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 15 20:58 pilot3.tar.gz
2025-05-18 05:48:17 (3516): Guest Log: -rwx------. 1 atlas atlas     37140 May 15 21:10 runpilot2-wrapper.sh
2025-05-18 05:48:17 (3516): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 15 21:10 queuedata.json
2025-05-18 05:48:17 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas      8382 May 17 17:13 init_data.xml
2025-05-18 05:48:17 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 May 17 17:13 input.tar.gz
2025-05-18 05:48:17 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 17 17:13 start_atlas.sh
2025-05-18 05:48:17 (3516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 17 17:13 EVNT.44638096._000338.pool.root.1 -> /data/./ATLAS.root_0
2025-05-18 05:48:17 (3516): Guest Log: -rw-r--r--. 1 atlas atlas      2538 May 17 17:14 pandaJob.out
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas       461 May 17 17:14 setup.sh.local
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas    994635 May 17 17:14 agis_schedconf.cvmfs.json
2025-05-18 05:48:17 (3516): Guest Log: drwx------. 4 atlas atlas      4096 May 17 17:14 pilot3
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas 187850525 May 18 03:46 HITS.44638099._029556.pool.root.1
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas        95 May 18 03:47 pilot_heartbeat.json
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas      1045 May 18 03:47 memory_monitor_summary.json
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas   1596741 May 18 03:47 agis_ddmendpoints.agis.ALL.json
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas    502606 May 18 03:47 log.44638099._029556.job.log.tgz.1
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas      7690 May 18 03:47 heartbeat.json
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas      4485 May 18 03:48 pilotlog.txt
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas   2877885 May 18 03:48 log.44638099._029556.job.log.1
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas       357 May 18 03:48 output.list
2025-05-18 05:48:17 (3516): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 18 03:48 runtime_log
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas   3399680 May 18 03:48 result.tar.gz
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas       666 May 18 03:48 Yl1MDmF1uZ7n9Rq4apOajLDm4fhM0noT9bVof3QYDmm1HKDmPHd5un.diag
2025-05-18 05:48:17 (3516): Guest Log: -rw-r--r--. 1 atlas atlas     11316 May 18 03:48 runtime_log.err
2025-05-18 05:48:17 (3516): Guest Log: Looking for outputfile HITS.44638099._029556.pool.root.1
2025-05-18 05:48:17 (3516): Guest Log: HITS file was successfully produced
2025-05-18 05:48:17 (3516): Guest Log: -rw-------. 1 atlas atlas 187850525 May 18 03:46 /home/atlas/RunAtlas/HITS.44638099._029556.pool.root.1
2025-05-18 05:48:19 (3516): Guest Log: Successfully finished the ATLAS job!
2025-05-18 05:48:19 (3516): Guest Log: Copying the results back to the shared directory!
2025-05-18 05:48:19 (3516): Guest Log:  *** Contents of shared directory: ***
2025-05-18 05:48:19 (3516): Guest Log: total 405544
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root 223478328 May 17 17:12 ATLAS.root_0
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root 187850525 May 18 03:48 HITS.pool.root.1
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root      8382 May 17 17:12 init_data.xml
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root    508882 May 16 00:12 input.tar.gz
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root   3399680 May 18 03:48 result.tar.gz
2025-05-18 05:48:19 (3516): Guest Log: -rwxrwxrwx. 1 root root     17569 May 16 00:12 start_atlas.sh
2025-05-18 05:48:19 (3516): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-18 05:48:19 (3516): VM Completion File Detected.
2025-05-18 05:48:19 (3516): Powering off VM.
2025-05-18 05:48:20 (3516): Successfully stopped VM.
2025-05-18 05:48:20 (3516): Deregistering VM. (boinc_a4764dd98d1ff8c3, slot#0)
2025-05-18 05:48:20 (3516): Removing network bandwidth throttle group from VM.
2025-05-18 05:48:21 (3516): Removing VM from VirtualBox.
05:48:26 (3516): called boinc_finish(0)

</stderr_txt>
]]>

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