Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-16 08:18:07 (18120): Detected: vboxwrapper 26206
2025-05-16 08:18:07 (18120): Detected: BOINC client v8.0.2
2025-05-16 08:18:08 (18120): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-16 08:18:08 (18120): Successfully copied 'init_data.xml' to the shared directory.
2025-05-16 08:18:08 (18120): Create VM. (boinc_88f047a1848a2a51, slot#0)
2025-05-16 08:18:09 (18120): Setting Memory Size for VM. (4800MB)
2025-05-16 08:18:09 (18120): Setting CPU Count for VM. (8)
2025-05-16 08:18:09 (18120): Setting Chipset Options for VM.
2025-05-16 08:18:10 (18120): Setting Graphics Controller Options for VM.
2025-05-16 08:18:10 (18120): Setting Boot Options for VM.
2025-05-16 08:18:10 (18120): Setting Network Configuration for NAT.
2025-05-16 08:18:10 (18120): Enabling VM Network Access.
2025-05-16 08:18:11 (18120): Disabling USB Support for VM.
2025-05-16 08:18:11 (18120): Disabling COM Port Support for VM.
2025-05-16 08:18:11 (18120): Disabling LPT Port Support for VM.
2025-05-16 08:18:12 (18120): Disabling Audio Support for VM.
2025-05-16 08:18:12 (18120): Disabling Clipboard Support for VM.
2025-05-16 08:18:12 (18120): Disabling Drag and Drop Support for VM.
2025-05-16 08:18:12 (18120): Adding storage controller(s) to VM.
2025-05-16 08:18:13 (18120): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-16 08:18:13 (18120): Adding VirtualBox Guest Additions to VM.
2025-05-16 08:18:13 (18120): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-16 08:18:14 (18120): forwarding host port 51860 to guest port 80
2025-05-16 08:18:14 (18120): Enabling remote desktop for VM.
2025-05-16 08:18:14 (18120): Required extension pack not installed, remote desktop not enabled.
2025-05-16 08:18:14 (18120): Enabling shared directory for VM.
2025-05-16 08:18:15 (18120): Starting VM using VBoxManage interface. (boinc_88f047a1848a2a51, slot#0)
2025-05-16 08:18:23 (18120): Successfully started VM. (PID = '9156')
2025-05-16 08:18:23 (18120): Reporting VM Process ID to BOINC.
2025-05-16 08:18:23 (18120): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-16 08:18:23 (18120): Guest Log: CPUID EDX: 0x178bfbff
2025-05-16 08:18:23 (18120): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-16 08:18:23 (18120): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-16 08:18:23 (18120): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-16 08:18:23 (18120): Detected: Web Application Enabled (http://localhost:51860)
2025-05-16 08:18:23 (18120): Preference change detected
2025-05-16 08:18:23 (18120): Setting CPU throttle for VM. (100%)
2025-05-16 08:18:23 (18120): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-16 08:18:25 (18120): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-16 08:18:25 (18120): Guest Log: BIOS: Booting from Hard Disk...
2025-05-16 08:18:28 (18120): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-16 08:18:28 (18120): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-16 08:18:28 (18120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-16 08:18:35 (18120): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-16 08:18:35 (18120): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-16 08:18:44 (18120): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000286 main     Log opened 2025-05-16T08:18:42.181072000Z
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000502 main     OS Product: Linux
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000568 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000642 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000705 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000707 main     Process ID: 1375
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.000708 main     Package type: LINUX_64BITS_GENERIC
2025-05-16 08:18:44 (18120): Guest Log: 00:00:00.002218 main     5.2.32 r132073 started. Verbose level = 0
2025-05-16 08:18:44 (18120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-16 08:18:44 (18120): Guest Log: [INFO] Mounting shared directory
2025-05-16 08:18:44 (18120): Guest Log: [INFO] Checking for init_data.xml
2025-05-16 08:18:48 (18120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-16 08:18:48 (18120): Guest Log: [INFO] Detected branch: prod
2025-05-16 08:18:48 (18120): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-16 08:18:48 (18120): Guest Log: Copying input files
2025-05-16 08:18:50 (18120): Guest Log: Copied input files into RunAtlas.
2025-05-16 08:18:50 (18120): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-16 08:18:50 (18120): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-16 08:18:50 (18120): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-16 08:18:50 (18120): Guest Log: Further information can be found at the LHC@home message board.
2025-05-16 08:18:54 (18120): Guest Log: 00:00:10.004894 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 142 239 000ns (GuestNow=1 747 376 334 042 685 000 ns GuestLast=1 747 383 522 184 924 000 ns fSetTimeLastLoop=true )
2025-05-16 08:19:00 (18120): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-16 08:19:00 (18120): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-16 08:19:00 (18120): Guest Log: 2.6.3.0 1652 0 30152 146053 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-16 08:19:01 (18120): Guest Log: copied the webapp to /var/www
2025-05-16 08:19:01 (18120): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-16 08:19:01 (18120): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-16 08:19:02 (18120): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-16 08:19:02 (18120): Guest Log:  *** Starting ATLAS job. (PandaID=6649927037 taskID=44638099) ***
2025-05-16 09:19:02 (18120): VM state change detected. (old = 'running', new = 'paused')
2025-05-16 09:19:33 (18120): VM state change detected. (old = 'paused', new = 'running')
2025-05-16 09:59:16 (18120): Status Report: Elapsed Time: '6000.000000'
2025-05-16 09:59:16 (18120): Status Report: CPU Time: '36120.750000'
2025-05-16 10:02:58 (18120): VM state change detected. (old = 'running', new = 'paused')
2025-05-16 11:02:58 (18120): VM state change detected. (old = 'paused', new = 'running')
2025-05-16 11:03:00 (18120): VM state change detected. (old = 'running', new = 'paused')
2025-05-16 11:05:09 (18120): VM state change detected. (old = 'paused', new = 'running')
2025-05-16 11:05:15 (18120): Guest Log: 01:43:51.880994 timesync vgsvcTimeSyncWorker: Radical host time change: 3 738 636 000 000ns (HostNow=1 747 386 314 195 000 000 ns HostLast=1 747 382 575 559 000 000 ns)
2025-05-16 11:05:25 (18120): Guest Log: 01:44:01.881602 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 768 283 263 000ns (GuestNow=1 747 386 324 198 860 000 ns GuestLast=1 747 382 555 915 597 000 ns fSetTimeLastLoop=true )
2025-05-16 12:41:51 (18120): Status Report: Elapsed Time: '12000.000000'
2025-05-16 12:41:51 (18120): Status Report: CPU Time: '82955.140625'
2025-05-16 13:18:05 (18120): Guest Log:  *** Job finished ***
2025-05-16 13:18:05 (18120): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:53,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:54,574 | INFO     | [job] queue monitor thread has finished
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:56,963 | INFO     | [data] queue_monitor thread has finished
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:57,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700000962368)>', '<ExcThread(monitor, started 140698749753088)>']
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:58,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:17:58,738 | INFO     | [monitor] control thread has ended
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,762 | INFO     | all workflow threads have been joined
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,762 | INFO     | end of generic workflow (traces error code: 0)
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,762 | INFO     | traces error code: 0
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,899 [wrapper] ==== pilot stdout END ====
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,909 [wrapper] ==== wrapper stdout RESUME ====
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,917 [wrapper] pilotpid: 6010
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:02,925 [wrapper] Pilot exit status: 0
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,068 [wrapper] pandaids: 6649927037
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,135 [wrapper] cleanup supervisor_pilot 13120 6011
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,145 [wrapper] Test setup, not cleaning
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,154 [wrapper] apfmon messages muted
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,163 [wrapper] ==== wrapper stdout END ====
2025-05-16 13:18:05 (18120): Guest Log: 2025-05-16 11:18:03,170 [wrapper] ==== wrapper stderr END ====
2025-05-16 13:18:05 (18120): Guest Log:  *** Error codes and diagnostics ***
2025-05-16 13:18:05 (18120): Guest Log:     "exeErrorCode": 0,
2025-05-16 13:18:05 (18120): Guest Log:     "exeErrorDiag": "",
2025-05-16 13:18:05 (18120): Guest Log:     "pilotErrorCode": 0,
2025-05-16 13:18:05 (18120): Guest Log:     "pilotErrorDiag": "",
2025-05-16 13:18:05 (18120): Guest Log:  *** Listing of results directory ***
2025-05-16 13:18:05 (18120): Guest Log: total 193348
2025-05-16 13:18:05 (18120): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 14 12:37 pilot3.tar.gz
2025-05-16 13:18:05 (18120): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 14 13:30 queuedata.json
2025-05-16 13:18:05 (18120): Guest Log: -rwx------. 1 atlas atlas     37140 May 14 13:31 runpilot2-wrapper.sh
2025-05-16 13:18:05 (18120): Guest Log: -rwxr-xr-x. 1 atlas atlas      9135 May 16 06:18 init_data.xml
2025-05-16 13:18:05 (18120): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 May 16 06:18 input.tar.gz
2025-05-16 13:18:05 (18120): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 16 06:18 start_atlas.sh
2025-05-16 13:18:05 (18120): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 16 06:18 EVNT.44638096._000132.pool.root.1 -> /data/./ATLAS.root_0
2025-05-16 13:18:05 (18120): Guest Log: -rw-r--r--. 1 atlas atlas      2538 May 16 06:19 pandaJob.out
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas       424 May 16 06:19 setup.sh.local
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas    989808 May 16 06:19 agis_schedconf.cvmfs.json
2025-05-16 13:18:05 (18120): Guest Log: drwx------. 4 atlas atlas      4096 May 16 06:20 pilot3
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas 191184365 May 16 11:16 HITS.44638099._003286.pool.root.1
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas        97 May 16 11:17 pilot_heartbeat.json
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas      1033 May 16 11:17 memory_monitor_summary.json
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas   1596741 May 16 11:17 agis_ddmendpoints.agis.ALL.json
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas    383069 May 16 11:17 log.44638099._003286.job.log.tgz.1
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas      7697 May 16 11:17 heartbeat.json
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas      4536 May 16 11:18 pilotlog.txt
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas   1135731 May 16 11:18 log.44638099._003286.job.log.1
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas       357 May 16 11:18 output.list
2025-05-16 13:18:05 (18120): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 16 11:18 runtime_log
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas   1536000 May 16 11:18 result.tar.gz
2025-05-16 13:18:05 (18120): Guest Log: -rw-r--r--. 1 atlas atlas     10917 May 16 11:18 runtime_log.err
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas       654 May 16 11:18 BYdLDmhNRZ7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRiFKDmMhINwm.diag
2025-05-16 13:18:05 (18120): Guest Log: Looking for outputfile HITS.44638099._003286.pool.root.1
2025-05-16 13:18:05 (18120): Guest Log: HITS file was successfully produced
2025-05-16 13:18:05 (18120): Guest Log: -rw-------. 1 atlas atlas 191184365 May 16 11:16 /home/atlas/RunAtlas/HITS.44638099._003286.pool.root.1
2025-05-16 13:18:07 (18120): Guest Log: Successfully finished the ATLAS job!
2025-05-16 13:18:07 (18120): Guest Log: Copying the results back to the shared directory!
2025-05-16 13:18:07 (18120): Guest Log:  *** Contents of shared directory: ***
2025-05-16 13:18:07 (18120): Guest Log: total 406388
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root 222872029 May 16 06:18 ATLAS.root_0
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root 191184365 May 16 11:18 HITS.pool.root.1
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root      9135 May 16 06:18 init_data.xml
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root    508876 May 15 21:01 input.tar.gz
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root   1536000 May 16 11:18 result.tar.gz
2025-05-16 13:18:07 (18120): Guest Log: -rwxrwxrwx. 1 root root     17569 May 15 21:01 start_atlas.sh
2025-05-16 13:18:07 (18120): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-16 13:18:07 (18120): VM Completion File Detected.
2025-05-16 13:18:07 (18120): Powering off VM.
2025-05-16 13:18:07 (18120): Successfully stopped VM.
2025-05-16 13:18:07 (18120): Deregistering VM. (boinc_88f047a1848a2a51, slot#0)
2025-05-16 13:18:07 (18120): Removing network bandwidth throttle group from VM.
2025-05-16 13:18:07 (18120): Removing VM from VirtualBox.
13:18:13 (18120): called boinc_finish(0)

</stderr_txt>
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