Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:15:33 (16045): wrapper (7.7.26015): starting
13:15:33 (16045): wrapper: running run_atlas (--nthreads 12)
[2025-05-15 13:15:33] Arguments: --nthreads 12
[2025-05-15 13:15:33] Threads: 12
[2025-05-15 13:15:33] Checking for CVMFS
[2025-05-15 13:15:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-15 13:15:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-15 13:15:33] Running cvmfs_config stat atlas.cern.ch
[2025-05-15 13:15:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-15 13:15:33] 2.11.2.0 2918 7169 81484 146036 3 15 18145676 20275201 1 130560 0 1977518 99.980 1312304 53456 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-15 13:15:33] CVMFS is ok
[2025-05-15 13:15:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-15 13:15:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-15 13:15:33] Further information can be found at the LHC@home message board.
[2025-05-15 13:15:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-15 13:15:33] Checking for apptainer binary...
[2025-05-15 13:15:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-15 13:15:33] Running /usr/bin/apptainer --version
[2025-05-15 13:15:33] apptainer version 1.3.2-1.el7
[2025-05-15 13:15:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-15 13:15:35] c-205-12.aglt2.org
[2025-05-15 13:15:35] apptainer works
[2025-05-15 13:15:35] Set ATHENA_PROC_NUMBER=12
[2025-05-15 13:15:35] Set ATHENA_CORE_NUMBER=12
[2025-05-15 13:15:35] Starting ATLAS job with PandaID=6650201404
[2025-05-15 13:15:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-15 14:50:20]  *** The last 200 lines of the pilot log: ***
[2025-05-15 14:50:20]  status=None
[2025-05-15 14:50:20]  status_code=0
[2025-05-15 14:50:20]  storage_token=
[2025-05-15 14:50:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6650201404/log.44638099._021394.job.log.tgz.1
[2025-05-15 14:50:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/8b/log.44638099._021394.job.log.tgz.1
[2025-05-15 14:50:20]  workdir=None
[2025-05-15 14:50:20] ]
[2025-05-15 14:50:20] 2025-05-15 18:49:57,032 | INFO     | transferring file log.44638099._021394.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/log.44638099._021394.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-05-15 14:50:20] 2025-05-15 18:49:57,032 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/log.44638099._021394.job.log.tgz.1 /tmp/boinchome/slots/0/log.44638099._021394.job
[2025-05-15 14:50:20] 2025-05-15 18:49:57,054 | INFO     | adding to output.list: log.44638099._021394.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/8b/log.44638099._021394.job.log.tg
[2025-05-15 14:50:20] 2025-05-15 18:49:57,055 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-15 14:50:20] 2025-05-15 18:49:57,055 | INFO     | summary of transferred files:
[2025-05-15 14:50:20] 2025-05-15 18:49:57,056 | INFO     |  -- lfn=log.44638099._021394.job.log.tgz.1, status_code=0, status=transferred
[2025-05-15 14:50:20] 2025-05-15 18:49:57,056 | INFO     | stage-out finished correctly
[2025-05-15 14:50:20] 2025-05-15 18:49:57,143 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-15 14:50:20] 2025-05-15 18:49:57,300 | WARNING  | process 26037 can no longer be monitored (due to stat problems) - aborting
[2025-05-15 14:50:20] 2025-05-15 18:49:57,301 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/memory_monitor_summary.json (trf name=prmon)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,305 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/memory_monitor_summary.json (trf name=prmon)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,307 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4038278 B
[2025-05-15 14:50:20] 2025-05-15 18:49:57,308 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15872 B
[2025-05-15 14:50:20] 2025-05-15 18:49:57,308 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-15 14:50:20] 2025-05-15 18:49:57,325 | INFO     | sufficient remaining disk space (29392633856 B)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,326 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,326 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6650201404: 4343960 B (within 2537553920 B limit)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,327 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6650201404/HITS.44638099._021394.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,327 | INFO     | total size of present files: 0 B (workdir size: 4343960 B)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,327 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/HITS.44638099._021394.pool.root.1 since it does not exist
[2025-05-15 14:50:20] 2025-05-15 18:49:57,383 | INFO     | job 6650201404 has state=finished
[2025-05-15 14:50:20] 2025-05-15 18:49:57,384 | INFO     | preparing for final server update for job 6650201404 in state='finished'
[2025-05-15 14:50:20] 2025-05-15 18:49:57,385 | INFO     | this job has now completed (state=finished)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,385 | INFO     | log transfer has been attempted: DONE
[2025-05-15 14:50:20] 2025-05-15 18:49:57,386 | INFO     | job 6650201404 has finished - writing final server update
[2025-05-15 14:50:20] 2025-05-15 18:49:57,386 | INFO     | total number of processed events: 400 (read)
[2025-05-15 14:50:20] 2025-05-15 18:49:57,388 | INFO     | executing command: lscpu
[2025-05-15 14:50:20] 2025-05-15 18:49:57,415 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-15 14:50:20] 2025-05-15 18:49:57,435 | INFO     | number of running child processes to parent process 26037: 1
[2025-05-15 14:50:20] 2025-05-15 18:49:57,435 | INFO     | maximum number of monitored processes: 6
[2025-05-15 14:50:20] 2025-05-15 18:49:59,938 | INFO     | monitor loop #424: job 0:6650201404 is in state 'finished'
[2025-05-15 14:50:20] 2025-05-15 18:49:59,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-15 14:50:20] 2025-05-15 18:50:01,951 | INFO     | CPU arch script returned: x86-64-v2
[2025-05-15 14:50:20] 2025-05-15 18:50:01,951 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6650201404/memory_monitor_summary.json (trf name=prmon)
[2025-05-15 14:50:20] 2025-05-15 18:50:01,952 | INFO     | extracted standard info from prmon json
[2025-05-15 14:50:20] 2025-05-15 18:50:01,952 | INFO     | extracted standard memory fields from prmon json
[2025-05-15 14:50:20] 2025-05-15 18:50:01,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-15 14:50:20] 2025-05-15 18:50:01,953 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-15 14:50:20] 2025-05-15 18:50:01,953 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-15 14:50:20] 2025-05-15 18:50:01,956 | INFO     | fitting pss+swap vs Time
[2025-05-15 14:50:20] 2025-05-15 18:50:01,957 | INFO     | sum of square deviations: 197203697.5
[2025-05-15 14:50:20] 2025-05-15 18:50:01,957 | INFO     | sum of deviations: 20095018025.0
[2025-05-15 14:50:20] 2025-05-15 18:50:01,957 | INFO     | mean x: 1747332274.5
[2025-05-15 14:50:20] 2025-05-15 18:50:01,957 | INFO     | mean y: 2706196.88372093
[2025-05-15 14:50:20] 2025-05-15 18:50:01,957 | INFO     | -- intersect: -178050109226.3248
[2025-05-15 14:50:20] 2025-05-15 18:50:01,958 | INFO     | intersect: -178050109226.3248
[2025-05-15 14:50:20] 2025-05-15 18:50:01,958 | INFO     | chi2: 2.4966144903597485
[2025-05-15 14:50:20] 2025-05-15 18:50:01,958 | INFO     | -- intersect: -178050109226.3248
[2025-05-15 14:50:20] 2025-05-15 18:50:01,958 | INFO     | current memory leak: 101.90 B/s (using 86 data points, chi2=2.50)
[2025-05-15 14:50:20] 2025-05-15 18:50:01,958 | INFO     | ..............................
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . Timing measurements:
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . get job = 0 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . initial setup = 2 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . payload setup = 7 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . stage-in = 0 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . payload execution = 5619 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . stage-out = 0 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | . log creation = 0 s
[2025-05-15 14:50:20] 2025-05-15 18:50:01,959 | INFO     | ..............................
[2025-05-15 14:50:20] 2025-05-15 18:50:02,201 | INFO     | 
[2025-05-15 14:50:20] 2025-05-15 18:50:02,201 | INFO     | job summary report
[2025-05-15 14:50:20] 2025-05-15 18:50:02,201 | INFO     | --------------------------------------------------
[2025-05-15 14:50:20] 2025-05-15 18:50:02,201 | INFO     | PanDA job id: 6650201404
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | task id: 44638099
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | errors: (none)
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | pilot state: finished 
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | transexitcode: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:02,202 | INFO     | exeerrorcode: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | exeerrordiag: 
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | exitcode: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | exitmsg: OK
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | cpuconsumptiontime: 54588 s
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | nevents: 400
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | neventsw: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:02,203 | INFO     | pid: 26037
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | pgrp: 26037
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | corecount: 12
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | event service: False
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | sizes: {0: 2393489, 1: 2393688, 5: 2393894, 11: 2393950, 5630: 2420383, 5632: 2429508, 5637: 2429650}
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | --------------------------------------------------
[2025-05-15 14:50:20] 2025-05-15 18:50:02,204 | INFO     | 
[2025-05-15 14:50:20] 2025-05-15 18:50:02,205 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-15 14:50:20] 2025-05-15 18:50:02,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-15 14:50:20] 2025-05-15 18:50:02,233 | INFO     | job 6650201404 has completed (purged errors)
[2025-05-15 14:50:20] 2025-05-15 18:50:02,233 | INFO     | overall cleanup function is called
[2025-05-15 14:50:20] 2025-05-15 18:50:03,241 | INFO     | --- collectZombieJob: --- 10, [26037]
[2025-05-15 14:50:20] 2025-05-15 18:50:03,242 | INFO     | zombie collector waiting for pid 26037
[2025-05-15 14:50:20] 2025-05-15 18:50:03,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-15 14:50:20] 2025-05-15 18:50:03,242 | INFO     | collected zombie processes
[2025-05-15 14:50:20] 2025-05-15 18:50:03,242 | INFO     | will attempt to kill all subprocesses of pid=26037
[2025-05-15 14:50:20] 2025-05-15 18:50:03,336 | INFO     | process IDs to be killed: [26037] (in reverse order)
[2025-05-15 14:50:20] 2025-05-15 18:50:03,388 | WARNING  | found no corresponding commands to process id(s)
[2025-05-15 14:50:20] 2025-05-15 18:50:03,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-15 14:50:20] 2025-05-15 18:50:03,392 | INFO     | did not find any defunct processes belonging to 26037
[2025-05-15 14:50:20] 2025-05-15 18:50:03,396 | INFO     | did not find any defunct processes belonging to 26037
[2025-05-15 14:50:20] 2025-05-15 18:50:03,396 | INFO     | ready for new job
[2025-05-15 14:50:20] 2025-05-15 18:50:03,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-15 14:50:20] 2025-05-15 18:50:03,397 | INFO     | **************************************
[2025-05-15 14:50:20] 2025-05-15 18:50:03,398 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-15 14:50:20] 2025-05-15 18:50:03,398 | INFO     | **************************************
[2025-05-15 14:50:20] 2025-05-15 18:50:03,398 | INFO     | 
[2025-05-15 14:50:20] 2025-05-15 18:50:03,398 | INFO     | architecture information:
[2025-05-15 14:50:20] 2025-05-15 18:50:03,399 | INFO     | executing command: cat /etc/os-release
[2025-05-15 14:50:20] 2025-05-15 18:50:03,413 | INFO     | cat /etc/os-release:
[2025-05-15 14:50:20] NAME="CentOS Linux"
[2025-05-15 14:50:20] VERSION="7 (Core)"
[2025-05-15 14:50:20] ID="centos"
[2025-05-15 14:50:20] ID_LIKE="rhel fedora"
[2025-05-15 14:50:20] VERSION_ID="7"
[2025-05-15 14:50:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-15 14:50:20] ANSI_COLOR="0;31"
[2025-05-15 14:50:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-15 14:50:20] HOME_URL="https://www.centos.org/"
[2025-05-15 14:50:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-15 14:50:20] 
[2025-05-15 14:50:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-15 14:50:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-15 14:50:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-15 14:50:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-15 14:50:20] 
[2025-05-15 14:50:20] 2025-05-15 18:50:03,414 | INFO     | **************************************
[2025-05-15 14:50:20] 2025-05-15 18:50:03,917 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-15 14:50:20] 2025-05-15 18:50:03,934 | INFO     | sufficient remaining disk space (29396828160 B)
[2025-05-15 14:50:20] 2025-05-15 18:50:03,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-15 14:50:20] 2025-05-15 18:50:03,935 | INFO     | current server update state: UPDATING_FINAL
[2025-05-15 14:50:20] 2025-05-15 18:50:03,935 | INFO     | update_server=False
[2025-05-15 14:50:20] 2025-05-15 18:50:03,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-15 14:50:20] 2025-05-15 18:50:03,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-15 14:50:20] 2025-05-15 18:50:03,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-15 14:50:20] 2025-05-15 18:50:03,936 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-15 14:50:20] 2025-05-15 18:50:03,936 | INFO     | aborting loop
[2025-05-15 14:50:20] 2025-05-15 18:50:04,060 | INFO     | found 0 job(s) in 20 queues
[2025-05-15 14:50:20] 2025-05-15 18:50:04,060 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-15 14:50:20] 2025-05-15 18:50:04,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-15 14:50:20] 2025-05-15 18:50:04,131 | INFO     | all job control threads have been joined
[2025-05-15 14:50:20] 2025-05-15 18:50:04,764 | INFO     | all data control threads have been joined
[2025-05-15 14:50:20] 2025-05-15 18:50:04,940 | INFO     | [job] retrieve thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:04,941 | INFO     | [job] queue monitor thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:04,942 | INFO     | [job] job monitor thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,025 | INFO     | [payload] failed_post thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,028 | INFO     | [job] validate thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,055 | INFO     | all payload control threads have been joined
[2025-05-15 14:50:20] 2025-05-15 18:50:05,136 | INFO     | [job] control thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-15 14:50:20] 2025-05-15 18:50:05,449 | INFO     | [job] create_data_payload thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,483 | INFO     | [payload] validate_pre thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,531 | INFO     | [payload] validate_post thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,720 | INFO     | [data] copytool_in thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:05,769 | INFO     | [data] control thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:06,061 | INFO     | [payload] control thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:06,346 | INFO     | [payload] execute_payloads thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:07,160 | INFO     | [data] copytool_out thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:07,942 | INFO     | [data] queue_monitor thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:14,204 | INFO     | job.realtimelogging is not enabled
[2025-05-15 14:50:20] 2025-05-15 18:50:15,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-15 14:50:20] 2025-05-15 18:50:15,432 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647263418176)>', '<ExcThread(monitor, started 140647036536576)>']
[2025-05-15 14:50:20] 2025-05-15 18:50:16,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-15 14:50:20] 2025-05-15 18:50:16,105 | INFO     | [monitor] control thread has ended
[2025-05-15 14:50:20] 2025-05-15 18:50:20,435 | INFO     | all workflow threads have been joined
[2025-05-15 14:50:20] 2025-05-15 18:50:20,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-15 14:50:20] 2025-05-15 18:50:20,435 | INFO     | traces error code: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:20,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-15 14:50:20] 2025-05-15 18:50:20,525 [wrapper] ==== pilot stdout END ====
[2025-05-15 14:50:20] 2025-05-15 18:50:20,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-15 14:50:20] 2025-05-15 18:50:20,532 [wrapper] pilotpid: 19645
[2025-05-15 14:50:20] 2025-05-15 18:50:20,535 [wrapper] Pilot exit status: 0
[2025-05-15 14:50:20] 2025-05-15 18:50:20,551 [wrapper] pandaids: 6650201404
[2025-05-15 14:50:20] 2025-05-15 18:50:20,587 [wrapper] cleanup supervisor_pilot 18743 19646
[2025-05-15 14:50:20] 2025-05-15 18:50:20,591 [wrapper] Test setup, not cleaning
[2025-05-15 14:50:20] 2025-05-15 18:50:20,595 [wrapper] apfmon messages muted
[2025-05-15 14:50:20] 2025-05-15 18:50:20,599 [wrapper] ==== wrapper stdout END ====
[2025-05-15 14:50:20] 2025-05-15 18:50:20,603 [wrapper] ==== wrapper stderr END ====
[2025-05-15 14:50:20]  *** Error codes and diagnostics ***
[2025-05-15 14:50:20]     "exeErrorCode": 0,
[2025-05-15 14:50:20]     "exeErrorDiag": "",
[2025-05-15 14:50:20]     "pilotErrorCode": 0,
[2025-05-15 14:50:20]     "pilotErrorDiag": "",
[2025-05-15 14:50:20]  *** Listing of results directory ***
[2025-05-15 14:50:20] total 412184
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas    495897 May 15 04:45 pilot3.tar.gz
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas      5111 May 15 04:54 queuedata.json
[2025-05-15 14:50:20] -rwx------ 1 boincer umatlas     37140 May 15 04:55 runpilot2-wrapper.sh
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas       100 May 15 13:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-15 14:50:20] -rwxr-xr-x 1 boincer umatlas      7986 May 15 13:15 run_atlas
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas       105 May 15 13:15 job.xml
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas 221873345 May 15 13:15 EVNT.44638096._001429.pool.root.1
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas     17569 May 15 13:15 start_atlas.sh
[2025-05-15 14:50:20] drwxrwx--x 2 boincer umatlas      4096 May 15 13:15 shared
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas    508881 May 15 13:15 input.tar.gz
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas         0 May 15 13:15 boinc_lockfile
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas      2538 May 15 13:15 pandaJob.out
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas       424 May 15 13:15 setup.sh.local
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas    995903 May 15 13:15 agis_schedconf.cvmfs.json
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas   1596741 May 15 13:15 agis_ddmendpoints.agis.ALL.json
[2025-05-15 14:50:20] drwx------ 4 boincer umatlas      4096 May 15 13:15 pilot3
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas      5868 May 15 14:47 init_data.xml
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas       530 May 15 14:49 boinc_task_state.xml
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas 194553786 May 15 14:49 HITS.44638099._021394.pool.root.1
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas      1047 May 15 14:49 memory_monitor_summary.json
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas        95 May 15 14:49 pilot_heartbeat.json
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas    367693 May 15 14:49 log.44638099._021394.job.log.tgz.1
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas      8192 May 15 14:49 boinc_mmap_file
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas        27 May 15 14:49 wrapper_checkpoint.txt
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas      7748 May 15 14:50 heartbeat.json
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas      4425 May 15 14:50 pilotlog.txt
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas    533279 May 15 14:50 log.44638099._021394.job.log.1
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas       357 May 15 14:50 output.list
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas       620 May 15 14:50 runtime_log
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas    921600 May 15 14:50 result.tar.gz
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas     11015 May 15 14:50 runtime_log.err
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas       658 May 15 14:50 DMqNDmVYjZ7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJIHKDmHgTh5n.diag
[2025-05-15 14:50:20] -rw-r--r-- 1 boincer umatlas     22159 May 15 14:50 stderr.txt
[2025-05-15 14:50:20] HITS file was successfully produced:
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas 194553786 May 15 14:49 shared/HITS.pool.root.1
[2025-05-15 14:50:20]  *** Contents of shared directory: ***
[2025-05-15 14:50:20] total 408096
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas 221873345 May 15 13:15 ATLAS.root_0
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas     17569 May 15 13:15 start_atlas.sh
[2025-05-15 14:50:20] -rw-r--r-- 2 boincer umatlas    508881 May 15 13:15 input.tar.gz
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas 194553786 May 15 14:49 HITS.pool.root.1
[2025-05-15 14:50:20] -rw------- 1 boincer umatlas    921600 May 15 14:50 result.tar.gz
14:50:21 (16045): run_atlas exited; CPU time 54605.778344
14:50:21 (16045): called boinc_finish(0)

</stderr_txt>
]]>

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