Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:49:09 (3877905): wrapper (7.7.26015): starting
10:49:09 (3877905): wrapper: running run_atlas (--nthreads 8)
[2025-05-15 10:49:09] Arguments: --nthreads 8
[2025-05-15 10:49:09] Threads: 8
[2025-05-15 10:49:09] Checking for CVMFS
[2025-05-15 10:49:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-15 10:49:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-15 10:49:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-15 10:49:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-15 10:49:10] 2.12.6.0 8999 8646 308900 146031 0 640 18754763 32935936 25368 16776704 0 29323400 99.501 47976588 30323 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-15 10:49:10] CVMFS is ok
[2025-05-15 10:49:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-15 10:49:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-15 10:49:10] Further information can be found at the LHC@home message board.
[2025-05-15 10:49:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-15 10:49:10] Checking for apptainer binary...
[2025-05-15 10:49:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-15 10:49:10] Running /usr/bin/apptainer --version
[2025-05-15 10:49:10] apptainer version 1.4.0-1.el9
[2025-05-15 10:49:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-15 10:49:10] c7-11-16.aglt2.org
[2025-05-15 10:49:10] apptainer works
[2025-05-15 10:49:10] Set ATHENA_PROC_NUMBER=8
[2025-05-15 10:49:10] Set ATHENA_CORE_NUMBER=8
[2025-05-15 10:49:10] Starting ATLAS job with PandaID=6650329125
[2025-05-15 10:49:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-15 18:35:10]  *** The last 200 lines of the pilot log: ***
[2025-05-15 18:35:10] 2025-05-15 22:34:47,375 | INFO     | mean y: 2056772.5833333333
[2025-05-15 18:35:10] 2025-05-15 22:34:47,376 | INFO     | -- intersect: -19142622098.401997
[2025-05-15 18:35:10] 2025-05-15 22:34:47,376 | INFO     | intersect: -19142622098.401997
[2025-05-15 18:35:10] 2025-05-15 22:34:47,376 | INFO     | chi2: 6.4997175767031905
[2025-05-15 18:35:10] 2025-05-15 22:34:47,377 | INFO     | sum of square deviations: 28444544564.736233
[2025-05-15 18:35:10] 2025-05-15 22:34:47,422 | INFO     | sum of deviations: 369328650453.909
[2025-05-15 18:35:10] 2025-05-15 22:34:47,422 | INFO     | mean x: 1747334367.676275
[2025-05-15 18:35:10] 2025-05-15 22:34:47,422 | INFO     | mean y: 2064245.6363636365
[2025-05-15 18:35:10] 2025-05-15 22:34:47,422 | INFO     | -- intersect: -22685612909.358974
[2025-05-15 18:35:10] 2025-05-15 22:34:47,422 | INFO     | intersect: -22685612909.358974
[2025-05-15 18:35:10] 2025-05-15 22:34:47,423 | INFO     | chi2: 5.008868758012791
[2025-05-15 18:35:10] 2025-05-15 22:34:47,423 | INFO     | current chi2=5.008868758012791 (change=22.937132284547555 %)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,423 | INFO     | right removable region: 450
[2025-05-15 18:35:10] 2025-05-15 22:34:47,423 | INFO     | sum of square deviations: 28444358514.736217
[2025-05-15 18:35:10] 2025-05-15 22:34:47,447 | INFO     | sum of deviations: 221856062721.99307
[2025-05-15 18:35:10] 2025-05-15 22:34:47,447 | INFO     | mean x: 1747334672.676275
[2025-05-15 18:35:10] 2025-05-15 22:34:47,447 | INFO     | mean y: 2072737.9246119733
[2025-05-15 18:35:10] 2025-05-15 22:34:47,447 | INFO     | -- intersect: -13626527482.985518
[2025-05-15 18:35:10] 2025-05-15 22:34:47,447 | INFO     | intersect: -13626527482.985518
[2025-05-15 18:35:10] 2025-05-15 22:34:47,448 | INFO     | chi2: 3.8925761639594736
[2025-05-15 18:35:10] 2025-05-15 22:34:47,448 | INFO     | current chi2=3.8925761639594736 (change=40.11161072734056 %)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,448 | INFO     | sum of square deviations: 27508647944.923866
[2025-05-15 18:35:10] 2025-05-15 22:34:47,452 | INFO     | sum of deviations: 147778585714.61856
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | mean x: 1747334825.1838565
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | mean y: 2084811.419282511
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | -- intersect: -9384733099.535854
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | intersect: -9384733099.535854
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | chi2: 2.6217624240220005
[2025-05-15 18:35:10] 2025-05-15 22:34:47,453 | INFO     | current chi2=2.6217624240220005 (change=32.64711302770809 %)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,454 | INFO     | sum of square deviations: 26593681950.059032
[2025-05-15 18:35:10] 2025-05-15 22:34:47,458 | INFO     | sum of deviations: 92878572336.9479
[2025-05-15 18:35:10] 2025-05-15 22:34:47,458 | INFO     | mean x: 1747334977.6916099
[2025-05-15 18:35:10] 2025-05-15 22:34:47,459 | INFO     | mean y: 2093948.5804988663
[2025-05-15 18:35:10] 2025-05-15 22:34:47,459 | INFO     | -- intersect: -6100482536.58534
[2025-05-15 18:35:10] 2025-05-15 22:34:47,459 | INFO     | intersect: -6100482536.58534
[2025-05-15 18:35:10] 2025-05-15 22:34:47,459 | INFO     | chi2: 1.8835398453802434
[2025-05-15 18:35:10] 2025-05-15 22:34:47,459 | INFO     | current chi2=1.8835398453802434 (change=28.157493290687363 %)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,460 | INFO     | sum of square deviations: 25699227967.63987
[2025-05-15 18:35:10] 2025-05-15 22:34:47,463 | INFO     | sum of deviations: 75726189526.45404
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | mean x: 1747335130.1995413
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | mean y: 2096858.2706422019
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | -- intersect: -5146658248.393888
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | intersect: -5146658248.393888
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | chi2: 1.782572822833589
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | current chi2=1.782572822833589 (change=5.360493052180238 %)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,464 | INFO     | left removable region: 40
[2025-05-15 18:35:10] 2025-05-15 22:34:47,465 | INFO     | sum of square deviations: 21370469416.39033
[2025-05-15 18:35:10] 2025-05-15 22:34:47,472 | INFO     | sum of deviations: 113354437282.24396
[2025-05-15 18:35:10] 2025-05-15 22:34:47,472 | INFO     | mean x: 1747335557.195122
[2025-05-15 18:35:10] 2025-05-15 22:34:47,472 | INFO     | mean y: 2107596.5219512195
[2025-05-15 18:35:10] 2025-05-15 22:34:47,473 | INFO     | -- intersect: -9266207243.450562
[2025-05-15 18:35:10] 2025-05-15 22:34:47,473 | INFO     | intersect: -9266207243.450562
[2025-05-15 18:35:10] 2025-05-15 22:34:47,473 | INFO     | chi2: 0.22253540196573568
[2025-05-15 18:35:10] 2025-05-15 22:34:47,473 | INFO     | -- intersect: -9266207243.450562
[2025-05-15 18:35:10] 2025-05-15 22:34:47,473 | INFO     | current memory leak: 5.30 B/s (using 410 data points, chi2=0.22)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | ..............................
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . Timing measurements:
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . get job = 0 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . initial setup = 3 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . payload setup = 18 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . stage-in = 0 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . payload execution = 27806 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . stage-out = 5 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | . log creation = 1 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,474 | INFO     | ..............................
[2025-05-15 18:35:10] 2025-05-15 22:34:47,711 | INFO     | 
[2025-05-15 18:35:10] 2025-05-15 22:34:47,711 | INFO     | job summary report
[2025-05-15 18:35:10] 2025-05-15 22:34:47,711 | INFO     | --------------------------------------------------
[2025-05-15 18:35:10] 2025-05-15 22:34:47,711 | INFO     | PanDA job id: 6650329125
[2025-05-15 18:35:10] 2025-05-15 22:34:47,711 | INFO     | task id: 44638099
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | errors: (none)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | pilot state: finished 
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | transexitcode: 0
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | exeerrorcode: 0
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | exeerrordiag: 
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | exitcode: 0
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | exitmsg: OK
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | cpuconsumptiontime: 41179 s
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | nevents: 400
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | neventsw: 0
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | pid: 3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | pgrp: 3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | corecount: 8
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | event service: False
[2025-05-15 18:35:10] 2025-05-15 22:34:47,712 | INFO     | sizes: {0: 2393711, 11: 2393711, 14: 2393945, 23: 2393973, 27830: 2429929, 27835: 2438870, 27839: 2439054, 27877: 2439224}
[2025-05-15 18:35:10] 2025-05-15 22:34:47,713 | INFO     | --------------------------------------------------
[2025-05-15 18:35:10] 2025-05-15 22:34:47,713 | INFO     | 
[2025-05-15 18:35:10] 2025-05-15 22:34:47,713 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-15 18:35:10] 2025-05-15 22:34:47,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | job 6650329125 has completed (purged errors)
[2025-05-15 18:35:10] 2025-05-15 22:34:47,991 | INFO     | overall cleanup function is called
[2025-05-15 18:35:10] 2025-05-15 22:34:49,038 | INFO     | --- collectZombieJob: --- 10, [3896037]
[2025-05-15 18:35:10] 2025-05-15 22:34:49,038 | INFO     | zombie collector waiting for pid 3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:49,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-15 18:35:10] 2025-05-15 22:34:49,038 | INFO     | collected zombie processes
[2025-05-15 18:35:10] 2025-05-15 22:34:49,038 | INFO     | will attempt to kill all subprocesses of pid=3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:51,661 | INFO     | PID=3885313 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-15 18:35:10] 2025-05-15 22:34:51,661 | INFO     | .. there are 39 such processes running
[2025-05-15 18:35:10] 2025-05-15 22:34:52,666 | INFO     | process IDs to be killed: [3896037] (in reverse order)
[2025-05-15 18:35:10] 2025-05-15 22:34:52,913 | WARNING  | found no corresponding commands to process id(s)
[2025-05-15 18:35:10] 2025-05-15 22:34:52,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-15 18:35:10] 2025-05-15 22:34:52,953 | INFO     | did not find any defunct processes belonging to 3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:53,034 | INFO     | did not find any defunct processes belonging to 3896037
[2025-05-15 18:35:10] 2025-05-15 22:34:53,034 | INFO     | ready for new job
[2025-05-15 18:35:10] 2025-05-15 22:34:53,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-15 18:35:10] 2025-05-15 22:34:53,046 | INFO     | **************************************
[2025-05-15 18:35:10] 2025-05-15 22:34:53,046 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-15 18:35:10] 2025-05-15 22:34:53,046 | INFO     | **************************************
[2025-05-15 18:35:10] 2025-05-15 22:34:53,047 | INFO     | 
[2025-05-15 18:35:10] 2025-05-15 22:34:53,062 | INFO     | architecture information:
[2025-05-15 18:35:10] 2025-05-15 22:34:53,073 | INFO     | executing command: cat /etc/os-release
[2025-05-15 18:35:10] 2025-05-15 22:34:53,132 | INFO     | cat /etc/os-release:
[2025-05-15 18:35:10] NAME="CentOS Linux"
[2025-05-15 18:35:10] VERSION="7 (Core)"
[2025-05-15 18:35:10] ID="centos"
[2025-05-15 18:35:10] ID_LIKE="rhel fedora"
[2025-05-15 18:35:10] VERSION_ID="7"
[2025-05-15 18:35:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-15 18:35:10] ANSI_COLOR="0;31"
[2025-05-15 18:35:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-15 18:35:10] HOME_URL="https://www.centos.org/"
[2025-05-15 18:35:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-15 18:35:10] 
[2025-05-15 18:35:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-15 18:35:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-15 18:35:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-15 18:35:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-15 18:35:10] 
[2025-05-15 18:35:10] 2025-05-15 22:34:53,132 | INFO     | **************************************
[2025-05-15 18:35:10] 2025-05-15 22:34:53,671 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-15 18:35:10] 2025-05-15 22:34:53,832 | INFO     | sufficient remaining disk space (94811193344 B)
[2025-05-15 18:35:10] 2025-05-15 22:34:53,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-15 18:35:10] 2025-05-15 22:34:53,833 | INFO     | current server update state: UPDATING_FINAL
[2025-05-15 18:35:10] 2025-05-15 22:34:53,833 | INFO     | update_server=False
[2025-05-15 18:35:10] 2025-05-15 22:34:53,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-15 18:35:10] 2025-05-15 22:34:53,836 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-15 18:35:10] 2025-05-15 22:34:53,836 | INFO     | found 0 job(s) in 20 queues
[2025-05-15 18:35:10] 2025-05-15 22:34:53,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-15 18:35:10] 2025-05-15 22:34:53,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-15 18:35:10] 2025-05-15 22:34:53,850 | INFO     | all payload control threads have been joined
[2025-05-15 18:35:10] 2025-05-15 22:34:54,479 | INFO     | all job control threads have been joined
[2025-05-15 18:35:10] 2025-05-15 22:34:54,667 | INFO     | all data control threads have been joined
[2025-05-15 18:35:10] 2025-05-15 22:34:54,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-15 18:35:10] 2025-05-15 22:34:54,833 | INFO     | aborting loop
[2025-05-15 18:35:10] 2025-05-15 22:34:54,841 | INFO     | [job] retrieve thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:54,857 | INFO     | [payload] control thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:54,929 | INFO     | [data] copytool_in thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-15 18:35:10] 2025-05-15 22:34:55,109 | INFO     | [payload] execute_payloads thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,485 | INFO     | [job] control thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,554 | INFO     | [payload] failed_post thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,594 | INFO     | [job] create_data_payload thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,630 | INFO     | [job] validate thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,673 | INFO     | [data] control thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,715 | INFO     | [payload] validate_post thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:55,839 | INFO     | [job] job monitor thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:56,061 | INFO     | [payload] validate_pre thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:56,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-15 18:35:10] 2025-05-15 22:34:56,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-15 18:35:10] 2025-05-15 22:34:57,061 | INFO     | [data] copytool_out thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:34:57,835 | INFO     | [job] queue monitor thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:35:00,880 | INFO     | [data] queue_monitor thread has finished
[2025-05-15 18:35:10] 2025-05-15 22:35:02,503 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681369192256)>', '<ExcThread(monitor, started 139680582461184)>']
[2025-05-15 18:35:10] 2025-05-15 22:35:02,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-15 18:35:10] 2025-05-15 22:35:02,926 | INFO     | [monitor] control thread has ended
[2025-05-15 18:35:10] 2025-05-15 22:35:07,550 | INFO     | all workflow threads have been joined
[2025-05-15 18:35:10] 2025-05-15 22:35:07,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-15 18:35:10] 2025-05-15 22:35:07,551 | INFO     | traces error code: 0
[2025-05-15 18:35:10] 2025-05-15 22:35:07,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-15 18:35:10] 2025-05-15 22:35:08,591 [wrapper] ==== pilot stdout END ====
[2025-05-15 18:35:10] 2025-05-15 22:35:08,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-15 18:35:10] 2025-05-15 22:35:08,676 [wrapper] pilotpid: 3885313
[2025-05-15 18:35:10] 2025-05-15 22:35:08,695 [wrapper] Pilot exit status: 0
[2025-05-15 18:35:10] 2025-05-15 22:35:08,835 [wrapper] pandaids: 6650329125
[2025-05-15 18:35:10] 2025-05-15 22:35:08,968 [wrapper] cleanup supervisor_pilot 2385702 3885314
[2025-05-15 18:35:10] 2025-05-15 22:35:09,019 [wrapper] Test setup, not cleaning
[2025-05-15 18:35:10] 2025-05-15 22:35:09,063 [wrapper] apfmon messages muted
[2025-05-15 18:35:10] 2025-05-15 22:35:09,106 [wrapper] ==== wrapper stdout END ====
[2025-05-15 18:35:10] 2025-05-15 22:35:09,165 [wrapper] ==== wrapper stderr END ====
[2025-05-15 18:35:10]  *** Error codes and diagnostics ***
[2025-05-15 18:35:10]     "exeErrorCode": 0,
[2025-05-15 18:35:10]     "exeErrorDiag": "",
[2025-05-15 18:35:10]     "pilotErrorCode": 0,
[2025-05-15 18:35:10]     "pilotErrorDiag": "",
[2025-05-15 18:35:10]  *** Listing of results directory ***
[2025-05-15 18:35:10] total 413988
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas    495897 May 15 07:29 pilot3.tar.gz
[2025-05-15 18:35:10] -rwx------. 1 boincer umatlas     37140 May 15 08:08 runpilot2-wrapper.sh
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas      5111 May 15 08:08 queuedata.json
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas       100 May 15 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-15 18:35:10] -rwxr-xr-x. 1 boincer umatlas      7986 May 15 10:49 run_atlas
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas       105 May 15 10:49 job.xml
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas 220655062 May 15 10:49 EVNT.44638096._001520.pool.root.1
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas     17569 May 15 10:49 start_atlas.sh
[2025-05-15 18:35:10] drwxrwx--x. 2 boincer umatlas      4096 May 15 10:49 shared
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas    508876 May 15 10:49 input.tar.gz
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas         0 May 15 10:49 boinc_lockfile
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas      2539 May 15 10:49 pandaJob.out
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas       467 May 15 10:49 setup.sh.local
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas    995415 May 15 10:49 agis_schedconf.cvmfs.json
[2025-05-15 18:35:10] drwx------. 4 boincer umatlas      4096 May 15 10:49 pilot3
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas      6898 May 15 18:28 init_data.xml
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas 194463615 May 15 18:31 HITS.44638099._023704.pool.root.1
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas       531 May 15 18:32 boinc_task_state.xml
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas      1031 May 15 18:33 memory_monitor_summary.json
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas        95 May 15 18:34 pilot_heartbeat.json
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas   1596741 May 15 18:34 agis_ddmendpoints.agis.ALL.json
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas    507020 May 15 18:34 log.44638099._023704.job.log.tgz.1
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas      7690 May 15 18:34 heartbeat.json
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas      8192 May 15 18:35 boinc_mmap_file
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas        28 May 15 18:35 wrapper_checkpoint.txt
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas      4476 May 15 18:35 pilotlog.txt
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas   1971612 May 15 18:35 log.44638099._023704.job.log.1
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas       357 May 15 18:35 output.list
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas       620 May 15 18:35 runtime_log
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas   2498560 May 15 18:35 result.tar.gz
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas     11419 May 15 18:35 runtime_log.err
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas       658 May 15 18:35 iRpMDmHZmZ7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbGJKDmSwU24n.diag
[2025-05-15 18:35:10] -rw-r--r--. 1 boincer umatlas     20989 May 15 18:35 stderr.txt
[2025-05-15 18:35:10] HITS file was successfully produced:
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas 194463615 May 15 18:31 shared/HITS.pool.root.1
[2025-05-15 18:35:10]  *** Contents of shared directory: ***
[2025-05-15 18:35:10] total 408360
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas 220655062 May 15 10:49 ATLAS.root_0
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas     17569 May 15 10:49 start_atlas.sh
[2025-05-15 18:35:10] -rw-r--r--. 2 boincer umatlas    508876 May 15 10:49 input.tar.gz
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas 194463615 May 15 18:31 HITS.pool.root.1
[2025-05-15 18:35:10] -rw-------. 1 boincer umatlas   2498560 May 15 18:35 result.tar.gz
18:35:12 (3877905): run_atlas exited; CPU time 41826.038670
18:35:12 (3877905): called boinc_finish(0)

</stderr_txt>
]]>

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