Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-15 01:45:09 (10504): Detected: vboxwrapper 26206
2025-05-15 01:45:09 (10504): Detected: BOINC client v8.0.2
2025-05-15 01:45:11 (10504): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-05-15 01:45:11 (10504): Successfully copied 'init_data.xml' to the shared directory.
2025-05-15 01:45:11 (10504): Create VM. (boinc_5d5ab101e30bef8d, slot#3)
2025-05-15 01:45:12 (10504): Setting Memory Size for VM. (4800MB)
2025-05-15 01:45:12 (10504): Setting CPU Count for VM. (8)
2025-05-15 01:45:12 (10504): Setting Chipset Options for VM.
2025-05-15 01:45:13 (10504): Setting Graphics Controller Options for VM.
2025-05-15 01:45:13 (10504): Setting Boot Options for VM.
2025-05-15 01:45:13 (10504): Setting Network Configuration for NAT.
2025-05-15 01:45:14 (10504): Enabling VM Network Access.
2025-05-15 01:45:14 (10504): Disabling USB Support for VM.
2025-05-15 01:45:14 (10504): Disabling COM Port Support for VM.
2025-05-15 01:45:14 (10504): Disabling LPT Port Support for VM.
2025-05-15 01:45:15 (10504): Disabling Audio Support for VM.
2025-05-15 01:45:15 (10504): Disabling Clipboard Support for VM.
2025-05-15 01:45:15 (10504): Disabling Drag and Drop Support for VM.
2025-05-15 01:45:15 (10504): Adding storage controller(s) to VM.
2025-05-15 01:45:16 (10504): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-15 01:45:19 (10504): Adding VirtualBox Guest Additions to VM.
2025-05-15 01:45:19 (10504): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-15 01:45:19 (10504): forwarding host port 6051 to guest port 80
2025-05-15 01:45:19 (10504): Enabling remote desktop for VM.
2025-05-15 01:45:20 (10504): Enabling shared directory for VM.
2025-05-15 01:45:20 (10504): Starting VM using VBoxManage interface. (boinc_5d5ab101e30bef8d, slot#3)
2025-05-15 01:45:26 (10504): Successfully started VM. (PID = '512')
2025-05-15 01:45:26 (10504): Reporting VM Process ID to BOINC.
2025-05-15 01:45:26 (10504): Guest Log: BIOS: VirtualBox 7.1.4
2025-05-15 01:45:26 (10504): Guest Log: CPUID EDX: 0x178bfbff
2025-05-15 01:45:26 (10504): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-15 01:45:26 (10504): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-15 01:45:26 (10504): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-15 01:45:26 (10504): Detected: Web Application Enabled (http://localhost:6051)
2025-05-15 01:45:26 (10504): Detected: Remote Desktop Enabled (localhost:6052)
2025-05-15 01:45:26 (10504): Preference change detected
2025-05-15 01:45:26 (10504): Setting CPU throttle for VM. (100%)
2025-05-15 01:45:26 (10504): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-15 01:45:28 (10504): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-15 01:45:28 (10504): Guest Log: BIOS: Booting from Hard Disk...
2025-05-15 01:45:30 (10504): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-15 01:45:30 (10504): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-15 01:45:30 (10504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-15 01:45:34 (10504): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-15 01:45:34 (10504): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-15 01:45:37 (10504): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000069 main     Log opened 2025-05-15T01:45:36.592180000Z
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000136 main     OS Product: Linux
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000153 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000165 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000182 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000182 main     Process ID: 1378
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000183 main     Package type: LINUX_64BITS_GENERIC
2025-05-15 01:45:37 (10504): Guest Log: 00:00:00.000575 main     5.2.32 r132073 started. Verbose level = 0
2025-05-15 01:45:37 (10504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-15 01:45:37 (10504): Guest Log: [INFO] Mounting shared directory
2025-05-15 01:45:38 (10504): Guest Log: [INFO] Checking for init_data.xml
2025-05-15 01:45:39 (10504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-15 01:45:39 (10504): Guest Log: [INFO] Detected branch: prod
2025-05-15 01:45:39 (10504): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-15 01:45:39 (10504): Guest Log: Copying input files
2025-05-15 01:45:40 (10504): Guest Log: Copied input files into RunAtlas.
2025-05-15 01:45:40 (10504): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-15 01:45:40 (10504): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-15 01:45:40 (10504): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-15 01:45:40 (10504): Guest Log: Further information can be found at the LHC@home message board.
2025-05-15 01:45:47 (10504): Guest Log: 00:00:10.001570 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 688 950 000ns (GuestNow=1 747 298 747 282 293 000 ns GuestLast=1 747 273 536 593 343 000 ns fSetTimeLastLoop=true )
2025-05-15 01:45:49 (10504): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-15 01:45:49 (10504): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-15 01:45:49 (10504): Guest Log: 2.6.3.0 1655 0 32212 146015 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-15 01:45:49 (10504): Guest Log: copied the webapp to /var/www
2025-05-15 01:45:49 (10504): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-15 01:45:49 (10504): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-15 01:45:49 (10504): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-15 01:45:49 (10504): Guest Log:  *** Starting ATLAS job. (PandaID=6651297983 taskID=44669238) ***
2025-05-15 02:13:33 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 02:13:53 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 02:21:54 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 02:22:14 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 02:39:05 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 02:39:25 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 02:50:28 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 02:50:48 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:03:11 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:03:31 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:06:41 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:07:01 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:08:22 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:08:42 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:25:46 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:26:06 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:26:37 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:26:57 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:27:17 (10504): VM state change detected. (old = 'running', new = 'paused')
2025-05-15 03:27:37 (10504): VM state change detected. (old = 'paused', new = 'running')
2025-05-15 03:29:51 (10504): Status Report: Elapsed Time: '6000.000000'
2025-05-15 03:29:51 (10504): Status Report: CPU Time: '35848.296875'
2025-05-15 03:31:52 (10504): Guest Log:  *** Job finished ***
2025-05-15 03:31:52 (10504): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:45,444 | INFO     | [data] queue_monitor thread has finished
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:51,610 | INFO     | job.realtimelogging is not enabled
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:52,613 | INFO     | [payload] run_realtimelog thread has finished
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:53,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123286513472)>', '<ExcThread(monitor, started 140122494330624)>']
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:53,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:53,823 | INFO     | [monitor] control thread has ended
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,130 | INFO     | all workflow threads have been joined
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,131 | INFO     | end of generic workflow (traces error code: 0)
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,131 | INFO     | traces error code: 0
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,131 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,203 [wrapper] ==== pilot stdout END ====
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,207 [wrapper] ==== wrapper stdout RESUME ====
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,210 [wrapper] pilotpid: 6015
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,213 [wrapper] Pilot exit status: 0
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,282 [wrapper] pandaids: 6651297983
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,305 [wrapper] cleanup supervisor_pilot  4976 6016
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,308 [wrapper] Test setup, not cleaning
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,312 [wrapper] apfmon messages muted
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,315 [wrapper] ==== wrapper stdout END ====
2025-05-15 03:31:52 (10504): Guest Log: 2025-05-15 10:37:58,318 [wrapper] ==== wrapper stderr END ====
2025-05-15 03:31:52 (10504): Guest Log:  *** Error codes and diagnostics ***
2025-05-15 03:31:52 (10504): Guest Log:     "exeErrorCode": 0,
2025-05-15 03:31:52 (10504): Guest Log:     "exeErrorDiag": "",
2025-05-15 03:31:52 (10504): Guest Log:     "pilotErrorCode": 0,
2025-05-15 03:31:52 (10504): Guest Log:     "pilotErrorDiag": "",
2025-05-15 03:31:52 (10504): Guest Log:  *** Listing of results directory ***
2025-05-15 03:31:52 (10504): Guest Log: total 225144
2025-05-15 03:31:52 (10504): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 15 04:39 pilot3.tar.gz
2025-05-15 03:31:52 (10504): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 15 05:24 queuedata.json
2025-05-15 03:31:52 (10504): Guest Log: -rwx------. 1 atlas atlas     37140 May 15 05:26 runpilot2-wrapper.sh
2025-05-15 03:31:52 (10504): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 15 08:45 start_atlas.sh
2025-05-15 03:31:52 (10504): Guest Log: -rwxr-xr-x. 1 atlas atlas    508893 May 15 08:45 input.tar.gz
2025-05-15 03:31:52 (10504): Guest Log: -rwxr-xr-x. 1 atlas atlas      9000 May 15 08:45 init_data.xml
2025-05-15 03:31:52 (10504): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 15 08:45 EVNT.44669236._000003.pool.root.1 -> /data/./ATLAS.root_0
2025-05-15 03:31:52 (10504): Guest Log: -rw-r--r--. 1 atlas atlas      2606 May 15 08:45 pandaJob.out
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas       424 May 15 08:45 setup.sh.local
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas    995394 May 15 08:46 agis_schedconf.cvmfs.json
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas   1596741 May 15 08:46 agis_ddmendpoints.agis.ALL.json
2025-05-15 03:31:52 (10504): Guest Log: drwx------. 4 atlas atlas      4096 May 15 08:46 pilot3
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas 224882861 May 15 10:37 HITS.44669238._000055.pool.root.1
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas      1039 May 15 10:37 memory_monitor_summary.json
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas    354430 May 15 10:37 log.44669238._000055.job.log.tgz.1
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas        95 May 15 10:37 pilot_heartbeat.json
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas      7670 May 15 10:37 heartbeat.json
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas      4801 May 15 10:37 pilotlog.txt
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas    587463 May 15 10:37 log.44669238._000055.job.log.1
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas       357 May 15 10:37 output.list
2025-05-15 03:31:52 (10504): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 15 10:37 runtime_log
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas    962560 May 15 10:37 result.tar.gz
2025-05-15 03:31:52 (10504): Guest Log: -rw-r--r--. 1 atlas atlas     10931 May 15 10:37 runtime_log.err
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas       654 May 15 10:37 PkzLDmoHgZ7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUTIKDmZ9lNkn.diag
2025-05-15 03:31:52 (10504): Guest Log: Looking for outputfile HITS.44669238._000055.pool.root.1
2025-05-15 03:31:52 (10504): Guest Log: HITS file was successfully produced
2025-05-15 03:31:52 (10504): Guest Log: -rw-------. 1 atlas atlas 224882861 May 15 10:37 /home/atlas/RunAtlas/HITS.44669238._000055.pool.root.1
2025-05-15 03:31:53 (10504): Guest Log: Successfully finished the ATLAS job!
2025-05-15 03:31:53 (10504): Guest Log: Copying the results back to the shared directory!
2025-05-15 03:31:53 (10504): Guest Log:  *** Contents of shared directory: ***
2025-05-15 03:31:53 (10504): Guest Log: total 555256
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root 342186876 May 15 08:45 ATLAS.root_0
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root 224882861 May 15 10:31 HITS.pool.root.1
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root      9000 May 15 08:45 init_data.xml
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root    508893 May 15 08:15 input.tar.gz
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root    962560 May 15 10:31 result.tar.gz
2025-05-15 03:31:53 (10504): Guest Log: -rwxrwxrwx. 1 root root     17569 May 15 08:15 start_atlas.sh
2025-05-15 03:31:53 (10504): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-15 03:31:53 (10504): VM Completion File Detected.
2025-05-15 03:31:53 (10504): Powering off VM.
2025-05-15 03:31:54 (10504): Successfully stopped VM.
2025-05-15 03:31:54 (10504): Deregistering VM. (boinc_5d5ab101e30bef8d, slot#3)
2025-05-15 03:31:54 (10504): Removing network bandwidth throttle group from VM.
2025-05-15 03:31:54 (10504): Removing VM from VirtualBox.
03:31:59 (10504): called boinc_finish(0)

</stderr_txt>
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