Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-15 03:17:47 (20004): Detected: vboxwrapper 26206
2025-05-15 03:17:47 (20004): Detected: BOINC client v8.2.1
2025-05-15 03:17:48 (20004): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-15 03:17:48 (20004): Successfully copied 'init_data.xml' to the shared directory.
2025-05-15 03:17:48 (20004): Create VM. (boinc_c3664ad61734de88, slot#1)
2025-05-15 03:17:49 (20004): Setting Memory Size for VM. (4096MB)
2025-05-15 03:17:49 (20004): Setting CPU Count for VM. (1)
2025-05-15 03:17:49 (20004): Setting Chipset Options for VM.
2025-05-15 03:17:50 (20004): Setting Graphics Controller Options for VM.
2025-05-15 03:17:50 (20004): Setting Boot Options for VM.
2025-05-15 03:17:50 (20004): Setting Network Configuration for NAT.
2025-05-15 03:17:50 (20004): Enabling VM Network Access.
2025-05-15 03:17:51 (20004): Disabling USB Support for VM.
2025-05-15 03:17:51 (20004): Disabling COM Port Support for VM.
2025-05-15 03:17:51 (20004): Disabling LPT Port Support for VM.
2025-05-15 03:17:51 (20004): Disabling Audio Support for VM.
2025-05-15 03:17:52 (20004): Disabling Clipboard Support for VM.
2025-05-15 03:17:52 (20004): Disabling Drag and Drop Support for VM.
2025-05-15 03:17:52 (20004): Adding storage controller(s) to VM.
2025-05-15 03:17:52 (20004): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-15 03:17:53 (20004): Adding VirtualBox Guest Additions to VM.
2025-05-15 03:17:53 (20004): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-15 03:17:53 (20004): forwarding host port 49749 to guest port 80
2025-05-15 03:17:54 (20004): Enabling remote desktop for VM.
2025-05-15 03:17:54 (20004): Required extension pack not installed, remote desktop not enabled.
2025-05-15 03:17:54 (20004): Enabling shared directory for VM.
2025-05-15 03:17:54 (20004): Starting VM using VBoxManage interface. (boinc_c3664ad61734de88, slot#1)
2025-05-15 03:18:00 (20004): Successfully started VM. (PID = '12868')
2025-05-15 03:18:00 (20004): Reporting VM Process ID to BOINC.
2025-05-15 03:18:00 (20004): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-15 03:18:00 (20004): Guest Log: CPUID EDX: 0x178bfbff
2025-05-15 03:18:00 (20004): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-15 03:18:00 (20004): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-15 03:18:00 (20004): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-15 03:18:00 (20004): Detected: Web Application Enabled (http://localhost:49749)
2025-05-15 03:18:00 (20004): Preference change detected
2025-05-15 03:18:00 (20004): Setting CPU throttle for VM. (100%)
2025-05-15 03:18:00 (20004): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-15 03:18:02 (20004): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-15 03:18:02 (20004): Guest Log: BIOS: Booting from Hard Disk...
2025-05-15 03:18:05 (20004): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-15 03:18:05 (20004): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-15 03:18:05 (20004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-15 03:18:09 (20004): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-15 03:18:09 (20004): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-15 03:18:21 (20004): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000186 main     Log opened 2025-05-15T03:18:19.287111000Z
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000274 main     OS Product: Linux
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000297 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000316 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000343 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000344 main     Process ID: 1247
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.000344 main     Package type: LINUX_64BITS_GENERIC
2025-05-15 03:18:21 (20004): Guest Log: 00:00:00.001921 main     5.2.32 r132073 started. Verbose level = 0
2025-05-15 03:18:21 (20004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-15 03:18:21 (20004): Guest Log: [INFO] Mounting shared directory
2025-05-15 03:18:21 (20004): Guest Log: [INFO] Checking for init_data.xml
2025-05-15 03:18:24 (20004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-15 03:18:24 (20004): Guest Log: [INFO] Detected branch: prod
2025-05-15 03:18:24 (20004): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-15 03:18:24 (20004): Guest Log: Copying input files
2025-05-15 03:18:26 (20004): Guest Log: Copied input files into RunAtlas.
2025-05-15 03:18:26 (20004): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-05-15 03:18:31 (20004): Guest Log: 00:00:10.026376 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 861 636 000ns (GuestNow=1 747 271 910 450 812 000 ns GuestLast=1 747 279 099 312 448 000 ns fSetTimeLastLoop=true )
2025-05-15 03:18:34 (20004): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-15 03:18:35 (20004): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-15 03:18:35 (20004): Guest Log: 2.6.3.0 1517 0 29572 146002 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-05-15 03:18:35 (20004): Guest Log: copied the webapp to /var/www
2025-05-15 03:18:35 (20004): Guest Log: core_number=1
2025-05-15 03:18:36 (20004): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-15 03:18:36 (20004): Guest Log:  *** Starting ATLAS job. (PandaID=6650011633 taskID=44638099) ***
2025-05-15 04:58:05 (20004): Status Report: Elapsed Time: '6000.000000'
2025-05-15 04:58:05 (20004): Status Report: CPU Time: '5813.468750'
2025-05-15 06:38:10 (20004): Status Report: Elapsed Time: '12000.000000'
2025-05-15 06:38:10 (20004): Status Report: CPU Time: '11803.812500'
2025-05-15 08:18:15 (20004): Status Report: Elapsed Time: '18000.000000'
2025-05-15 08:18:15 (20004): Status Report: CPU Time: '17792.328125'
2025-05-15 09:58:20 (20004): Status Report: Elapsed Time: '24000.000000'
2025-05-15 09:58:20 (20004): Status Report: CPU Time: '23779.031250'
2025-05-15 11:38:25 (20004): Status Report: Elapsed Time: '30000.000000'
2025-05-15 11:38:25 (20004): Status Report: CPU Time: '29760.296875'
2025-05-15 13:18:31 (20004): Status Report: Elapsed Time: '36000.000000'
2025-05-15 13:18:31 (20004): Status Report: CPU Time: '35744.890625'
2025-05-15 14:58:36 (20004): Status Report: Elapsed Time: '42000.000000'
2025-05-15 14:58:36 (20004): Status Report: CPU Time: '41726.390625'
2025-05-15 16:38:42 (20004): Status Report: Elapsed Time: '48000.000000'
2025-05-15 16:38:42 (20004): Status Report: CPU Time: '47707.828125'
2025-05-15 18:18:48 (20004): Status Report: Elapsed Time: '54000.000000'
2025-05-15 18:18:48 (20004): Status Report: CPU Time: '53691.500000'
2025-05-15 19:54:37 (20004): Guest Log:  *** Job finished ***
2025-05-15 19:54:37 (20004): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:29,308 | INFO     | [job] create_data_payload thread has finished
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:29,392 | INFO     | [payload] validate_post thread has finished
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:30,896 | INFO     | [data] queue_monitor thread has finished
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:31,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620009752384)>', '<ExcThread(monitor, started 140619427075840)>']
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:31,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:31,899 | INFO     | [monitor] control thread has ended
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,185 | INFO     | all workflow threads have been joined
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,185 | INFO     | end of generic workflow (traces error code: 0)
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,185 | INFO     | traces error code: 0
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,368 [wrapper] ==== pilot stdout END ====
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,375 [wrapper] ==== wrapper stdout RESUME ====
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,382 [wrapper] pilotpid: 5772
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,388 [wrapper] Pilot exit status: 0
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,502 [wrapper] pandaids: 6650011633
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,554 [wrapper] cleanup supervisor_pilot 19797 5773
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,561 [wrapper] Test setup, not cleaning
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,570 [wrapper] apfmon messages muted
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,574 [wrapper] ==== wrapper stdout END ====
2025-05-15 19:54:37 (20004): Guest Log: 2025-05-15 17:54:36,579 [wrapper] ==== wrapper stderr END ====
2025-05-15 19:54:37 (20004): Guest Log:  *** Error codes and diagnostics ***
2025-05-15 19:54:37 (20004): Guest Log:     "exeErrorCode": 0,
2025-05-15 19:54:37 (20004): Guest Log:     "exeErrorDiag": "",
2025-05-15 19:54:37 (20004): Guest Log:     "pilotErrorCode": 0,
2025-05-15 19:54:37 (20004): Guest Log:     "pilotErrorDiag": "",
2025-05-15 19:54:37 (20004): Guest Log:  *** Listing of results directory ***
2025-05-15 19:54:37 (20004): Guest Log: total 211484
2025-05-15 19:54:37 (20004): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 14 17:39 pilot3.tar.gz
2025-05-15 19:54:37 (20004): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 14 18:42 queuedata.json
2025-05-15 19:54:37 (20004): Guest Log: -rwx------. 1 atlas atlas     37140 May 14 18:44 runpilot2-wrapper.sh
2025-05-15 19:54:37 (20004): Guest Log: -rwxr-xr-x. 1 atlas atlas      9394 May 15 01:18 init_data.xml
2025-05-15 19:54:37 (20004): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 May 15 01:18 input.tar.gz
2025-05-15 19:54:37 (20004): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 15 01:18 start_atlas.sh
2025-05-15 19:54:37 (20004): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 15 01:18 EVNT.44638096._000880.pool.root.1 -> /data/./ATLAS.root_0
2025-05-15 19:54:37 (20004): Guest Log: -rw-r--r--. 1 atlas atlas      2535 May 15 01:18 pandaJob.out
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas       460 May 15 01:18 setup.sh.local
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas    993874 May 15 01:18 agis_schedconf.cvmfs.json
2025-05-15 19:54:37 (20004): Guest Log: drwx------. 4 atlas atlas      4096 May 15 01:18 pilot3
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas 201207699 May 15 17:53 HITS.44638099._011450.pool.root.1
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas        95 May 15 17:53 pilot_heartbeat.json
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas      1021 May 15 17:54 memory_monitor_summary.json
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas   1596741 May 15 17:54 agis_ddmendpoints.agis.ALL.json
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas    662051 May 15 17:54 log.44638099._011450.job.log.tgz.1
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas      7672 May 15 17:54 heartbeat.json
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas      4722 May 15 17:54 pilotlog.txt
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas   5127049 May 15 17:54 log.44638099._011450.job.log.1
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas       357 May 15 17:54 output.list
2025-05-15 19:54:37 (20004): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 15 17:54 runtime_log
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas   5806080 May 15 17:54 result.tar.gz
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas       656 May 15 17:54 sveMDmqGWZ7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlRGKDmWliO3n.diag
2025-05-15 19:54:37 (20004): Guest Log: -rw-r--r--. 1 atlas atlas     11168 May 15 17:54 runtime_log.err
2025-05-15 19:54:37 (20004): Guest Log: Looking for outputfile HITS.44638099._011450.pool.root.1
2025-05-15 19:54:37 (20004): Guest Log: HITS file was successfully produced
2025-05-15 19:54:37 (20004): Guest Log: -rw-------. 1 atlas atlas 201207699 May 15 17:53 /home/atlas/RunAtlas/HITS.44638099._011450.pool.root.1
2025-05-15 19:54:39 (20004): Guest Log: Successfully finished the ATLAS job!
2025-05-15 19:54:39 (20004): Guest Log: Copying the results back to the shared directory!
2025-05-15 19:54:39 (20004): Guest Log:  *** Contents of shared directory: ***
2025-05-15 19:54:39 (20004): Guest Log: total 417576
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root 220033157 May 15 01:17 ATLAS.root_0
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root 201207699 May 15 17:54 HITS.pool.root.1
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root      9394 May 15 01:17 init_data.xml
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root    508874 May 15 00:04 input.tar.gz
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root   5806080 May 15 17:54 result.tar.gz
2025-05-15 19:54:39 (20004): Guest Log: -rwxrwxrwx. 1 root root     17569 May 15 00:04 start_atlas.sh
2025-05-15 19:54:39 (20004): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-15 19:54:39 (20004): VM Completion File Detected.
2025-05-15 19:54:39 (20004): Powering off VM.
2025-05-15 19:54:40 (20004): Successfully stopped VM.
2025-05-15 19:54:40 (20004): Deregistering VM. (boinc_c3664ad61734de88, slot#1)
2025-05-15 19:54:40 (20004): Removing network bandwidth throttle group from VM.
2025-05-15 19:54:40 (20004): Removing VM from VirtualBox.
19:54:45 (20004): called boinc_finish(0)

</stderr_txt>
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